INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/eabuenaventura/DRAFT_immunizationfhirig --branch eabdraft repo DEBUG:root:Time to deadline 35879.997599 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.529283 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.105842 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/eabuenaventura/DRAFT_immunizationfhirig/ -out /scratch/repo DEBUG:root:Time to deadline 35870.854643 seconds FHIR IG Publisher Version 2.0.20 (Git# 487d8f9634de). Built 2025-10-09T01:56:51.278Z (4 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/eabuenaventura/DRAFT_immunizationfhirig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, October 9, 2025, 6:52:38 AM Coordinated Universal Time (2025-10-09T06:52:38Z) Build FHIR IG from /scratch/repo (00:00.032 / 00:00.033, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.037, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.041, 97Mb) Found dependency on example.fhir.ph.core#current in Sushi config. Pre-installing (00:00.006 / 00:00.048, 97Mb) Installing example.fhir.ph.core#current to the package cache  Fetching:  Installing example.fhir.ph.core#current  done. Run Sushi on /scratch/repo (00:01.753 / 00:01.801, 55Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.922 / 00:02.723, 63Mb) Sushi: info Arguments: (00:00.000 / 00:02.723, 63Mb) Sushi: info --require-latest (00:00.000 / 00:02.724, 63Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:02.724, 63Mb) Sushi: info /scratch/repo (00:00.000 / 00:02.724, 63Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.867 / 00:03.592, 63Mb) Sushi: info Importing FSH text... (00:00.174 / 00:03.766, 63Mb) Sushi: info Preprocessed 24 documents with 15 aliases. (00:00.429 / 00:04.195, 63Mb) Sushi: info Imported 17 definitions and 6 instances. (00:00.045 / 00:04.240, 63Mb) Sushi: warn Detected FSH entity definitions with duplicate names. While FSH allows for duplicate names across entity types, they can lead to ambiguous results when referring to these entities by name elsewhere (e.g., in references). Consider using unique names in FSH declarations and assigning duplicated names using caret assignment rules instead. Detected duplicate names: SEIR___Action_Reason, SEIR___Encounter_Type, SEIR_Vaccine_Generic_Name. (00:00.007 / 00:04.248, 63Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.226 / 00:04.475, 63Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.624 / 00:05.099, 63Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:05.100, 63Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.826 / 00:05.927, 63Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.004 / 00:05.931, 63Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.094 / 00:06.025, 63Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.451 / 00:06.477, 63Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:06.477, 63Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.268 / 00:09.745, 63Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:09.747, 63Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.899 / 00:11.647, 71Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.467 / 00:12.114, 71Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:12.115, 71Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.526 / 00:13.642, 71Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:13.643, 71Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.333 / 00:13.977, 71Mb) Sushi: info Loaded example.fhir.ph.core#current with 42 resources (00:00.102 / 00:14.079, 71Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:14.079, 71Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.532 / 00:17.612, 71Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:17.614, 71Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.703 / 00:19.318, 71Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.012 / 00:19.330, 71Mb) Sushi: info Converting FSH to FHIR resources... (00:00.025 / 00:19.356, 71Mb) Sushi: error Unable to find definition for RuleSet MetaData. (00:00.010 / 00:19.367, 71Mb) Sushi: File: /scratch/repo/input/fsh/Extension/indigenousMember.fsh (00:00.000 / 00:19.367, 71Mb) Sushi: Line: 7 (00:00.000 / 00:19.368, 71Mb) Sushi: error Inline extensions should only be defined in Extensions. (00:00.711 / 00:20.079, 71Mb) Sushi: File: /scratch/repo/input/fsh/Profiles/SEIR Patient.fsh (00:00.000 / 00:20.080, 71Mb) Sushi: Line: 22 - 23 (00:00.000 / 00:20.080, 71Mb) Sushi: info Converted 7 FHIR StructureDefinitions. (00:00.242 / 00:20.323, 71Mb) Sushi: info Converted 5 FHIR CodeSystems. (00:00.528 / 00:20.851, 71Mb) Sushi: info Converted 5 FHIR ValueSets. (00:00.492 / 00:21.343, 71Mb) Sushi: info Converted 6 FHIR instances. (00:02.595 / 00:23.939, 71Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:23.940, 71Mb) Sushi: info Exported 23 FHIR resources as JSON. (00:00.066 / 00:24.007, 71Mb) Sushi: info Assembling Implementation Guide sources... (00:00.003 / 00:24.011, 71Mb) Sushi: info Generated ImplementationGuide-up-manila-silab.immunizationfhirig.json (00:00.066 / 00:24.077, 71Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:24.078, 71Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:24.079, 71Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.080, 71Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:24.080, 71Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:24.080, 71Mb) Sushi: | | 4 | 3 | 0 | 0 | | (00:00.000 / 00:24.081, 71Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.081, 71Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.081, 71Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:24.081, 71Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:24.081, 71Mb) Sushi: | | 5 | 5 | 6 | | (00:00.000 / 00:24.082, 71Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.082, 71Mb) Sushi: | | (00:00.000 / 00:24.082, 71Mb) Sushi: =================================================================== (00:00.000 / 00:24.082, 71Mb) Sushi: | This is the one that got away. 2 Errors 1 Warning | (00:00.000 / 00:24.083, 71Mb) Sushi: =================================================================== (00:00.000 / 00:24.083, 71Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.018 / 00:24.101, 71Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:24.102, 71Mb) Exception: Process exited with an error: 2 (Exit value: 2) (00:00.000 / 00:24.102, 71Mb) Publishing Content Failed: Process exited with an error: 2 (Exit value: 2) (00:00.000 / 00:24.102, 71Mb) (00:00.000 / 00:24.102, 71Mb) Use -? to get command line help (00:00.000 / 00:24.102, 71Mb) (00:00.000 / 00:24.102, 71Mb) Stack Dump (for debugging): (00:00.000 / 00:24.103, 71Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 2 (Exit value: 2) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:137) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:208) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1487)