INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/donaldkibet/FHIR-IG-Template --branch master repo DEBUG:root:Time to deadline 35879.998102 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.631465 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.362443 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 5s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.0 npm notice Changelog: npm notice Run `npm install -g npm@11.6.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/donaldkibet/FHIR-IG-Template/ -out /scratch/repo DEBUG:root:Time to deadline 35873.222192 seconds FHIR IG Publisher Version 2.0.17 (Git# 98facbadd305). Built 2025-09-09T06:53:45.198Z (13 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/donaldkibet/FHIR-IG-Template/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, September 23, 2025, 6:19:29 AM Coordinated Universal Time (2025-09-23T06:19:29Z) Build FHIR IG from /scratch/repo (00:00.021 / 00:00.022, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.024, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.026, 97Mb) Found dependency on hl7.fhir.uv.cql#1.0.0 in Sushi config. Pre-installing (00:00.004 / 00:00.030, 97Mb) Installing hl7.fhir.uv.cql#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cql#1.0.0  done. Found dependency on hl7.fhir.uv.crmi#1.0.0 in Sushi config. Pre-installing (00:01.609 / 00:01.640, 64Mb) Installing hl7.fhir.uv.crmi#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.crmi#1.0.0  done. Found dependency on hl7.fhir.us.cqfmeasures#5.0.0 in Sushi config. Pre-installing (00:01.197 / 00:02.838, 82Mb) Installing hl7.fhir.us.cqfmeasures#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.cqfmeasures#5.0.0  done. Found dependency on fhir.cqf.common#4.0.1 in Sushi config. Pre-installing (00:00.936 / 00:03.774, 104Mb) Installing fhir.cqf.common#4.0.1 to the package cache  Fetching:  Installing fhir.cqf.common#4.0.1  done. Run Sushi on /scratch/repo (00:00.408 / 00:04.183, 104Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.554 / 00:04.738, 113Mb) Sushi: info Arguments: (00:00.000 / 00:04.738, 113Mb) Sushi: info --require-latest (00:00.000 / 00:04.738, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:04.738, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:04.738, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.538 / 00:05.277, 113Mb) Sushi: info Importing FSH text... (00:00.120 / 00:05.397, 113Mb) Sushi: info Preprocessed 20 documents with 23 aliases. (00:00.336 / 00:05.733, 113Mb) Sushi: info Imported 36 definitions and 45 instances. (00:00.096 / 00:05.830, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.137 / 00:05.967, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.587 / 00:06.555, 120Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:06.556, 120Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.812 / 00:07.368, 120Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:07.371, 120Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.059 / 00:07.431, 120Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.469 / 00:07.900, 120Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:07.901, 120Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.690 / 00:10.591, 120Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:10.592, 120Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.180 / 00:11.773, 120Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.466 / 00:12.239, 120Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:12.240, 120Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.411 / 00:13.652, 120Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:13.653, 120Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.217 / 00:13.870, 120Mb) Sushi: info Loaded hl7.fhir.uv.cql#1.0.0 with 15 resources (00:00.010 / 00:13.881, 120Mb) Sushi: info Loaded hl7.fhir.uv.crmi#1.0.0 with 79 resources (00:00.048 / 00:13.930, 120Mb) Sushi: info Loaded hl7.fhir.us.cqfmeasures#5.0.0 with 88 resources (00:00.051 / 00:13.981, 120Mb) Sushi: info Loaded fhir.cqf.common#4.0.1 with 9 resources (00:00.012 / 00:13.994, 120Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:13.994, 120Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.977 / 00:16.972, 120Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:16.973, 120Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.176 / 00:18.150, 120Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.008 / 00:18.159, 120Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:18.159, 120Mb) Sushi: info Found 5 non-JSON / non-XML file(s) in directory: /scratch/repo/input/maps. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:18.159, 120Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:18.159, 120Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:18.160, 120Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:18.160, 120Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:18.160, 120Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:18.160, 120Mb) Sushi: info Converting FSH to FHIR resources... (00:00.023 / 00:18.184, 120Mb) Sushi: info Converted 26 FHIR StructureDefinitions. (00:01.571 / 00:19.755, 120Mb) Sushi: info Converted 3 FHIR CodeSystems. (00:00.057 / 00:19.813, 120Mb) Sushi: info Converted 7 FHIR ValueSets. (00:00.125 / 00:19.938, 120Mb) Sushi: info Converted 45 FHIR instances. (00:03.190 / 00:23.128, 120Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.003 / 00:23.132, 120Mb) Sushi: info Exported 81 FHIR resources as JSON. (00:00.077 / 00:23.210, 120Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:23.213, 120Mb) Sushi: info Generated ImplementationGuide-jembi.starter.ig.json (00:00.034 / 00:23.247, 120Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:23.247, 120Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:23.248, 120Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:23.248, 120Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:23.249, 120Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:23.249, 120Mb) Sushi: | | 19 | 5 | 2 | 0 | | (00:00.000 / 00:23.249, 120Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:23.249, 120Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:23.249, 120Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:23.249, 120Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:23.250, 120Mb) Sushi: | | 7 | 3 | 45 | | (00:00.000 / 00:23.250, 120Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:23.250, 120Mb) Sushi: | | (00:00.000 / 00:23.250, 120Mb) Sushi: =================================================================== (00:00.000 / 00:23.250, 120Mb) Sushi: | Swish! Nothing but fishnet. 0 Errors 0 Warnings | (00:00.000 / 00:23.250, 120Mb) Sushi: =================================================================== (00:00.000 / 00:23.251, 120Mb) Root directory: /scratch/repo (00:00.025 / 00:23.276, 128Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.499 / 00:23.775, 57Mb) Load Template from local-template (00:00.450 / 00:24.225, 65Mb) Load Template from fhir.base.template#current (00:00.036 / 00:24.262, 65Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.265 / 00:27.528, 401Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:27.528, 401Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-135840483923719699.html Connect to Terminology Server at http://tx.fhir.org (00:25.691 / 00:53.219, 371Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology#5.5.0 to the package cache  Fetching:  Installing hl7.terminology#5.5.0  done. Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Load Package hl7.terminology#5.5.0 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.fhir.uv.cql#1.0.0 Load Package hl7.fhir.uv.crmi#1.0.0 Installing hl7.terminology.r4#6.0.2 to the package cache  Fetching:  Installing hl7.terminology.r4#6.0.2  done. Load Package hl7.terminology.r4#6.0.2 Load Package hl7.fhir.us.cqfmeasures#5.0.0 Installing hl7.fhir.uv.cpg#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cpg#1.0.0  done. Load Package hl7.fhir.uv.cpg#1.0.0 Load Package fhir.cqf.common#4.0.1 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:25.351 / 01:18.571, 765Mb) Load IG (00:00.000 / 01:18.571, 765Mb) Load Content (00:00.000 / 01:18.572, 765Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.117 / 01:18.690, 773Mb) Translating CQL source (00:00.029 / 01:18.719, 779Mb) Translating CQL source in folder /scratch/repo/input/cql (00:00.000 / 01:18.720, 779Mb) Skipped loading namespace infor for uri http://terminology.hl7.org because it is already registered (00:00.036 / 01:18.756, 779Mb) Skipped loading namespace info for name hl7.fhir.uv.extensions.r4 because it is already registered (00:00.000 / 01:18.756, 779Mb) Skipped loading namespace info for name hl7.fhir.uv.extensions.r4 because it is already registered (00:00.000 / 01:18.756, 779Mb) Skipped loading namespace info for name hl7.terminology.r4 because it is already registered (00:00.000 / 01:18.756, 779Mb) Translating CQL source in file /scratch/repo/input/cql/LocalCommon.cql (00:00.000 / 01:18.756, 779Mb) CQL translation completed successfully. (00:02.443 / 01:21.200, 824Mb) Translating CQL source in file /scratch/repo/input/cql/ViralLoad.cql (00:00.000 / 01:21.200, 824Mb) CQL translation completed successfully. (00:00.562 / 01:21.763, 952Mb) Translating CQL source in file /scratch/repo/input/cql/ViralLoadStatus.cql (00:00.000 / 01:21.763, 952Mb) CQL translation completed successfully. (00:00.245 / 01:22.009, 1008Mb) Translating CQL source in file /scratch/repo/input/cql/OutpatientViralLoad.cql (00:00.000 / 01:22.009, 1008Mb) CQL translation completed successfully. (00:00.219 / 01:22.229, 1Gb) Translating CQL source in file /scratch/repo/input/cql/HIVCommon.cql (00:00.000 / 01:22.229, 1Gb) CQL translation completed successfully. (00:00.225 / 01:22.454, 1Gb) Translating CQL source in file /scratch/repo/input/cql/InitiatedART.cql (00:00.000 / 01:22.454, 1Gb) CQL translation completed successfully. (00:00.010 / 01:22.465, 1Gb) org.hl7.fhir.r5.fhirpath.FHIRLexer$FHIRLexerException: Error @36, 6: Map Input cannot be empty at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:140) at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:136) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:73) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:59) at org.hl7.fhir.igtools.publisher.SimpleFetcher.scan(SimpleFetcher.java:413) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadResources(PublisherIGLoader.java:2861) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:1995) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:355) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482) Error loading /scratch/repo/input/maps/fhirr4-patient-cht-patient.fml: Error @36, 6: Map Input cannot be empty (00:01.155 / 01:23.621, 1Gb) org.hl7.fhir.r5.fhirpath.FHIRLexer$FHIRLexerException: Error @43, 6: Map Input cannot be empty at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:140) at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:136) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:73) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:59) at org.hl7.fhir.igtools.publisher.SimpleFetcher.scan(SimpleFetcher.java:413) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadResources(PublisherIGLoader.java:2861) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:1995) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:355) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482) Error loading /scratch/repo/input/maps/cht-patient-to-fhirr4-patient.fml: Error @43, 6: Map Input cannot be empty (00:00.000 / 01:23.621, 1Gb) Process Loaded Resources (00:00.717 / 01:24.339, 1Gb) Generating Snapshots (00:00.751 / 01:25.090, 1Gb) Process Additional Loaded Resources (00:01.526 / 01:26.617, 1Gb) Generating Snapshots (00:00.000 / 01:26.617, 1Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://jembi.org/fhir/package-list.json for version check (00:00.043 / 01:26.661, 1Gb) Processing Conformance Resources (00:00.792 / 01:27.454, 1Gb) Checking Language (00:00.000 / 01:27.454, 1Gb) Load Dependency Info (00:00.001 / 01:27.456, 1Gb) Load Info (00:00.001 / 01:27.457, 1Gb) Load Paths (00:00.000 / 01:27.457, 1Gb) Check R4 / R4B (00:00.000 / 01:27.458, 1Gb) Assign Comparison Ids (00:00.038 / 01:27.496, 1Gb) Propagating status (00:00.000 / 01:27.496, 1Gb) Generating Narratives (00:00.000 / 01:27.496, 1Gb) Validating Conformance Resources (00:04.774 / 01:32.271, 1Gb) Check profiles & code systems (00:20.081 / 01:52.352, 1Gb) Check realm rules (00:00.002 / 01:52.355, 1Gb) Previous Version Comparison (00:00.000 / 01:52.355, 1Gb) Checking for Bundles to sign (00:00.031 / 01:52.386, 1Gb) Validating Resources (00:00.000 / 01:52.386, 1Gb) Processing Provenance Records (00:02.946 / 01:55.332, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:55.333, 2Gb) Generate Native Outputs (00:00.229 / 01:55.562, 2Gb) Run Template (00:05.999 / 02:01.562, 1Gb) Generate HTML Outputs (00:01.140 / 02:02.702, 1Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-PatientLogicalModel::StructureDefinition/PatientLogicalModel: Error generating table for profile http://jembi.org/fhir/StructureDefinition/PatientLogicalModel: Title cells must have text (00:02.582 / 02:05.284, 2Gb) org.hl7.fhir.exceptions.FHIRException: Error generating table for profile http://jembi.org/fhir/StructureDefinition/PatientLogicalModel: Title cells must have text at org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:596) at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.mappings(StructureDefinitionRenderer.java:1259) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateOutputsStructureDefinition(PublisherGenerator.java:1800) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtmlInner(PublisherGenerator.java:4835) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtml(PublisherGenerator.java:4808) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputsInner(PublisherGenerator.java:667) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputs(PublisherGenerator.java:628) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:250) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:391) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482) Caused by: org.hl7.fhir.exceptions.FHIRException: Title cells must have text at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.check(HierarchicalTableGenerator.java:1455) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.check(HierarchicalTableGenerator.java:1340) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.checkModel(HierarchicalTableGenerator.java:1324) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.generate(HierarchicalTableGenerator.java:932) at org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:594) ... 10 more org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:596) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.mappings(StructureDefinitionRenderer.java:1259) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateOutputsStructureDefinition(PublisherGenerator.java:1800) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtmlInner(PublisherGenerator.java:4835) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtml(PublisherGenerator.java:4808) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputsInner(PublisherGenerator.java:667) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputs(PublisherGenerator.java:628) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:250) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:391) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) (00:00.000 / 02:05.285, 2Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482) (00:00.000 / 02:05.285, 2Gb) Exception generating resource /scratch/repo/fsh-generated/resources/StructureDefinition-RelatedPersonLogicalModel::StructureDefinition/RelatedPersonLogicalModel: Error generating table for profile http://jembi.org/fhir/StructureDefinition/RelatedPersonLogicalModel: Title cells must have text (00:00.155 / 02:05.441, 2Gb) org.hl7.fhir.exceptions.FHIRException: Error generating table for profile http://jembi.org/fhir/StructureDefinition/RelatedPersonLogicalModel: Title cells must have text at org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:596) at org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.mappings(StructureDefinitionRenderer.java:1259) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateOutputsStructureDefinition(PublisherGenerator.java:1800) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtmlInner(PublisherGenerator.java:4835) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtml(PublisherGenerator.java:4808) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputsInner(PublisherGenerator.java:667) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputs(PublisherGenerator.java:628) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:250) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:391) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482) Caused by: org.hl7.fhir.exceptions.FHIRException: Title cells must have text at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.check(HierarchicalTableGenerator.java:1455) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.check(HierarchicalTableGenerator.java:1340) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.checkModel(HierarchicalTableGenerator.java:1324) at org.hl7.fhir.utilities.xhtml.HierarchicalTableGenerator.generate(HierarchicalTableGenerator.java:932) at org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:594) ... 10 more org.hl7.fhir.r5.renderers.StructureDefinitionRenderer.generateTable(StructureDefinitionRenderer.java:596) (00:00.000 / 02:05.441, 2Gb) org.hl7.fhir.igtools.renderers.StructureDefinitionRenderer.mappings(StructureDefinitionRenderer.java:1259) (00:00.000 / 02:05.441, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateOutputsStructureDefinition(PublisherGenerator.java:1800) (00:00.000 / 02:05.442, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtmlInner(PublisherGenerator.java:4835) (00:00.000 / 02:05.442, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateResourceHtml(PublisherGenerator.java:4808) (00:00.000 / 02:05.442, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputsInner(PublisherGenerator.java:667) (00:00.000 / 02:05.442, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generateHtmlOutputs(PublisherGenerator.java:628) (00:00.000 / 02:05.442, 2Gb) org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:250) (00:00.000 / 02:05.442, 2Gb) org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:391) (00:00.000 / 02:05.442, 2Gb) org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) (00:00.000 / 02:05.442, 2Gb) org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482) (00:00.000 / 02:05.442, 2Gb) Generate Spreadsheets (00:10.582 / 02:16.024, 4Gb) Generate Summaries (00:04.612 / 02:20.637, 1Gb) Generating Summary Outputs (00:00.000 / 02:20.637, 1Gb) DB Cumulative Time invested: 00:00:01.165 Sending Usage Stats to Server (00:14.967 / 02:35.605, 7Gb) ## Memory (MB): Use = 7239, Free = 11768, Total = 19008, Max = 19008 (00:00.012 / 02:35.618, 7Gb) Reclaiming memory... (00:00.000 / 02:35.618, 7Gb) ## Memory (MB): Use = 1269, Free = 17738, Total = 19008, Max = 19008 (00:01.406 / 02:37.024, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 02:37.026, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:37.026, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:37.026, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:37.026, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.403 / 02:37.430, 1Gb) Jekyll: Generating... (00:00.000 / 02:37.430, 1Gb) Jekyll has failed. Complete output from running Jekyll:  Liquid Exception: Could not locate the included file 'StructureDefinition-PatientLogicalModel-maps.xhtml' in any of ["/scratch/repo/temp/pages/_includes"]. Ensure it exists in one of those directories and, if it is a symlink, does not point outside (00:00.972 / 02:38.402, 1Gb) Note: Check that Jekyll is installed correctly (00:00.000 / 02:38.402, 1Gb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.020 / 02:38.423, 1Gb) (00:00.000 / 02:38.423, 1Gb) Use -? to get command line help (00:00.000 / 02:38.423, 1Gb) (00:00.000 / 02:38.423, 1Gb) Stack Dump (for debugging): (00:00.000 / 02:38.423, 1Gb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runJekyll(PublisherGenerator.java:3678) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runTool(PublisherGenerator.java:3565) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:360) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:391) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482)