New Zealand Health Terminology Service (NZHTS) Implementation Guide
0.1.0 - ci-build
New Zealand Health Terminology Service (NZHTS) Implementation Guide
0.1.0 - ci-build
New Zealand Health Terminology Service (NZHTS) Implementation Guide, published by Health New Zealand | Te Whatu Ora. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/daniel-thomson/nzhts/ and changes regularly. See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/ips/ValueSet/results-pathology-observations-uv-ips | Version: 0.1.0 | |||
| Standards status: Trial-use | Maturity Level: 2 | Computable Name: ResultsPathologyObservationUvIps | ||
| Other Identifiers: http://art-decor.org/ns/oids/vs#2.16.840.1.113883.11.22.41 (use: official, ) | ||||
Copyright/Legal: This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc |
||||
Value Set Definition:
LOINC {STATUS in {ACTIVE}, CLASSTYPE in {1}, CLASS in {CYTO, HL7.CYTOGEN, HL7.GENETICS, MOLPATH, MOLPATH.*, PATH, PATH.*}}
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
Generated Narrative: ValueSet results-pathology-observations-uv-ips
version: 1; Last updated: 2024-11-05 17:15:41+1300
Profile: Shareable ValueSet
http://loinc.org where STATUS = ACTIVE, CLASSTYPE = 1 and CLASS matches (by regex) CYTO|HL7\.CYTOGEN|HL7\.GENETICS|^PATH(\..*)?|^MOLPATH(\..*)?
Generated Narrative: ValueSet results-pathology-observations-uv-ips
version: 1; Last updated: 2024-11-05 17:15:41+1300
Profile: Shareable ValueSet
Expansion based on Loinc v2.78
This value set contains 143 concepts
| Code | System | Display |
| 48008-7 | http://loinc.org | Allele name [Identifier] |
| 53034-5 | http://loinc.org | Allelic state |
| 48005-3 | http://loinc.org | Amino acid change (pHGVS) |
| 48006-1 | http://loinc.org | Amino acid change [Type] |
| 53721-7 | http://loinc.org | Amino acid marker assessed [Identifier] |
| 44945-4 | http://loinc.org | Australian cervix cytology code [Interpretation] of Specimen |
| 62382-7 | http://loinc.org | Base pair end coordinate [#] |
| 62381-9 | http://loinc.org | Base pair start coordinate [#] |
| 62368-6 | http://loinc.org | Cell phase [Type] |
| 62360-3 | http://loinc.org | Cells analyzed [#] |
| 62361-1 | http://loinc.org | Cells counted [#] |
| 21176-3 | http://loinc.org | Cerebroventricular lining cells [Presence] in Cerebral spinal fluid by Light microscopy |
| 62357-9 | http://loinc.org | Chromosome analysis overall interpretation Qualitative |
| 62356-1 | http://loinc.org | Chromosome analysis result in ISCN expression |
| 62380-1 | http://loinc.org | Chromosome band involved end |
| 62379-3 | http://loinc.org | Chromosome band involved start |
| 62359-5 | http://loinc.org | Chromosome banding method - |
| 62378-5 | http://loinc.org | Chromosome copy number change [Type] |
| 62362-9 | http://loinc.org | Colonies counted [#] |
| 19767-3 | http://loinc.org | Cytologist who read Cyto stain of Cervical or vaginal smear or scraping |
| 59256-8 | http://loinc.org | Cytologist who read Cyto stain of Specimen |
| 47523-6 | http://loinc.org | Cytology report of Body fluid Cyto stain |
| 47530-1 | http://loinc.org | Cytology report of Breast ductal lavage Cyto stain |
| 47521-0 | http://loinc.org | Cytology report of Breast fine needle aspirate Cyto stain |
| 50971-1 | http://loinc.org | Cytology report of Bronchial brush Cyto stain |
| 50007-4 | http://loinc.org | Cytology report of Bronchoalveolar lavage Cyto stain |
| 47528-5 | http://loinc.org | Cytology report of Cervical or vaginal smear or scraping Cyto stain |
| 47527-7 | http://loinc.org | Cytology report of Cervical or vaginal smear or scraping Cyto stain.thin prep |
| 47522-8 | http://loinc.org | Cytology report of Nipple discharge Cyto stain |
| 47526-9 | http://loinc.org | Cytology report of Specimen Cyto stain |
| 47520-2 | http://loinc.org | Cytology report of Sputum Cyto stain |
| 47524-4 | http://loinc.org | Cytology report of Thyroid fine needle aspirate Cyto stain |
| 33718-8 | http://loinc.org | Cytology report of Tissue fine needle aspirate Cyto stain |
| 47529-3 | http://loinc.org | Cytology report of Tissue Other stain |
| 47525-1 | http://loinc.org | Cytology report of Urine Cyto stain |
| 19774-9 | http://loinc.org | Cytology study comment Cervical or vaginal smear or scraping Cyto stain |
| 62365-2 | http://loinc.org | Diagnostic impression [Interpretation] in Specimen Narrative |
| 51968-6 | http://loinc.org | Discrete variation analysis overall interpretation |
| 48004-6 | http://loinc.org | DNA change (c.HGVS) |
| 48019-4 | http://loinc.org | DNA change type |
| 53035-2 | http://loinc.org | DNA marker assessed [Identifier] |
| 47999-8 | http://loinc.org | DNA region name [Identifier] |
| 69545-2 | http://loinc.org | DNA region of interest start [Identifier] |
| 69546-0 | http://loinc.org | DNA region of interest stop [Identifier] |
| 47998-0 | http://loinc.org | DNA sequence variation display name [Text] Narrative |
| 48003-8 | http://loinc.org | DNA sequence variation identifier [Identifier] |
| 51964-5 | http://loinc.org | Drug efficacy analysis overall interpretation |
| 53036-0 | http://loinc.org | Filler DNA analysis test identifier [Identifier] |
| 62384-3 | http://loinc.org | Flanking normal region after end |
| 62383-5 | http://loinc.org | Flanking normal region before start |
| 48018-6 | http://loinc.org | Gene studied [ID] |
| 19762-4 | http://loinc.org | General categories [Interpretation] of Cervical or vaginal smear or scraping by Cyto stain |
| 51969-4 | http://loinc.org | Genetic analysis report |
| 53039-4 | http://loinc.org | Genetic disease analysis overall carrier interpretation |
| 51967-8 | http://loinc.org | Genetic disease assessed [ID] |
| 69549-4 | http://loinc.org | Genetic knowledge reference [Identifier] |
| 69550-2 | http://loinc.org | Genetic knowledge reference [Type] |
| 69548-6 | http://loinc.org | Genetic variant assessment |
| 53037-8 | http://loinc.org | Genetic variation clinical significance [Imp] |
| 51961-1 | http://loinc.org | Genetic variation's effect on drug efficacy |
| 53040-2 | http://loinc.org | Genetic variation's effect on drug metabolism |
| 69551-0 | http://loinc.org | Genomic alt allele [ID] |
| 69547-8 | http://loinc.org | Genomic ref allele [ID] |
| 48013-7 | http://loinc.org | Genomic reference sequence [ID] |
| 48002-0 | http://loinc.org | Genomic source class [Type] |
| 62373-6 | http://loinc.org | Human reference assembly release, UCSC version [Identifier] |
| 62374-4 | http://loinc.org | Human reference sequence assembly version |
| 51970-2 | http://loinc.org | Individual allele identifier [Identifier] |
| 62358-7 | http://loinc.org | ISCN band level [#] Qualitative |
| 82254-4 | http://loinc.org | Marker and derivative chromosome analysis in Amniotic fluid or Chorionic villus sample Document by Cytogenetics |
| 82255-1 | http://loinc.org | Marker and derivative chromosome analysis in Blood or Tissue Document by Cytogenetics |
| 51963-7 | http://loinc.org | Medication assessed [ID] |
| 62375-1 | http://loinc.org | Microarray platform [Identifier] Narrative |
| 62376-9 | http://loinc.org | Microarray platform version number Narrative |
| 49034-2 | http://loinc.org | Microorganism identified in Cervical or vaginal smear or scraping by Cyto stain |
| 57764-3 | http://loinc.org | Microscopic exam [Interpretation] of Bone marrow by Cytology |
| 11553-5 | http://loinc.org | Microscopic exam [Interpretation] of Sputum by Cytology |
| 11552-7 | http://loinc.org | Microscopic exam [Interpretation] of Tissue fine needle aspirate by Cytology |
| 27045-4 | http://loinc.org | Microscopic exam [Interpretation] of Urine by Cytology |
| 31196-9 | http://loinc.org | Microscopic observation [Identifier] in Abdomen fine needle aspirate by Cyto stain |
| 77653-4 | http://loinc.org | Microscopic observation [Identifier] in Anorectal Cyto stain.thin prep |
| 11068-4 | http://loinc.org | Microscopic observation [Identifier] in Body fluid by Cyto stain |
| 18328-5 | http://loinc.org | Microscopic observation [Identifier] in Body fluid by Other stain |
| 18498-6 | http://loinc.org | Microscopic observation [Identifier] in Breast fine needle aspirate by Cyto stain |
| 50389-6 | http://loinc.org | Microscopic observation [Identifier] in Bronchial brush by Cyto stain.thin prep |
| 42210-5 | http://loinc.org | Microscopic observation [Identifier] in Bronchial specimen by Cyto stain |
| 18501-7 | http://loinc.org | Microscopic observation [Identifier] in Buccal smear by Cyto stain |
| 42209-7 | http://loinc.org | Microscopic observation [Identifier] in Cerebral spinal fluid by Cyto stain |
| 19765-7 | http://loinc.org | Microscopic observation [Identifier] in Cervical or vaginal smear or scraping by Cyto stain |
| 19766-5 | http://loinc.org | Microscopic observation [Identifier] in Cervical or vaginal smear or scraping by Cyto stain Narrative |
| 10524-7 | http://loinc.org | Microscopic observation [Identifier] in Cervix by Cyto stain |
| 18500-9 | http://loinc.org | Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep |
| 104866-9 | http://loinc.org | Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep.computer assisted |
| 18502-5 | http://loinc.org | Microscopic observation [Identifier] in Deep tissue fine needle aspirate by Cyto stain |
| 49050-8 | http://loinc.org | Microscopic observation [Identifier] in Endocervical brush by Cyto stain |
| 55604-3 | http://loinc.org | Microscopic observation [Identifier] in Endometrium by Cyto stain |
| 43417-5 | http://loinc.org | Microscopic observation [Identifier] in Esophageal brushing by Cyto stain |
| 11069-2 | http://loinc.org | Microscopic observation [Identifier] in Gastric fluid by Cyto stain |
| 31188-6 | http://loinc.org | Microscopic observation [Identifier] in Kidney fine needle aspirate by Cyto stain |
| 31192-8 | http://loinc.org | Microscopic observation [Identifier] in Liver fine needle aspirate by Cyto stain |
| 31199-3 | http://loinc.org | Microscopic observation [Identifier] in Lung fine needle aspirate by Cyto stain |
| 31187-8 | http://loinc.org | Microscopic observation [Identifier] in Lymph node fine needle aspirate by Cyto stain |
| 31189-4 | http://loinc.org | Microscopic observation [Identifier] in Neck mass fine needle aspirate by Cyto stain |
| 18499-4 | http://loinc.org | Microscopic observation [Identifier] in Nipple discharge by Cyto stain |
| 31193-6 | http://loinc.org | Microscopic observation [Identifier] in Pancreas fine needle aspirate by Cyto stain |
| 31198-5 | http://loinc.org | Microscopic observation [Identifier] in Parotid fine needle aspirate by Cyto stain |
| 31197-7 | http://loinc.org | Microscopic observation [Identifier] in Pelvis fine needle aspirate by Cyto stain |
| 55601-9 | http://loinc.org | Microscopic observation [Identifier] in Pericardial fluid by Cyto stain |
| 55600-1 | http://loinc.org | Microscopic observation [Identifier] in Peritoneal fluid by Cyto stain |
| 55602-7 | http://loinc.org | Microscopic observation [Identifier] in Pleural fluid by Cyto stain |
| 31191-0 | http://loinc.org | Microscopic observation [Identifier] in Prostate fine needle aspirate by Cyto stain |
| 31190-2 | http://loinc.org | Microscopic observation [Identifier] in Salivary gland fine needle aspirate by Cyto stain |
| 31195-1 | http://loinc.org | Microscopic observation [Identifier] in Soft tissue fine needle aspirate by Cyto stain |
| 10525-4 | http://loinc.org | Microscopic observation [Identifier] in Specimen by Cyto stain |
| 32785-8 | http://loinc.org | Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method |
| 10526-2 | http://loinc.org | Microscopic observation [Identifier] in Sputum by Cyto stain |
| 31194-4 | http://loinc.org | Microscopic observation [Identifier] in Submandibular fine needle aspirate by Cyto stain |
| 18503-3 | http://loinc.org | Microscopic observation [Identifier] in Superficial tissue fine needle aspirate by Cyto stain |
| 55603-5 | http://loinc.org | Microscopic observation [Identifier] in Synovial fluid by Cyto stain |
| 18497-8 | http://loinc.org | Microscopic observation [Identifier] in Thyroid fine needle aspirate by Cyto stain |
| 10527-0 | http://loinc.org | Microscopic observation [Identifier] in Tissue by Cyto stain |
| 11070-0 | http://loinc.org | Microscopic observation [Identifier] in Urine by Cyto stain |
| 39086-4 | http://loinc.org | Microscopic observation [Identifier] in Vaginal fluid by Cyto stain.thin prep |
| 32151-3 | http://loinc.org | Microscopic observation [Identifier] in Vaginal fluid by Non-gynecological cytology method |
| 62363-7 | http://loinc.org | Mosaicism detected |
| 50398-7 | http://loinc.org | Narrative diagnostic report [Interpretation] |
| 19769-9 | http://loinc.org | Pathologist who read Cyto stain of Cervical or vaginal smear or scraping |
| 51965-2 | http://loinc.org | Pharmacogenetic analysis report Document |
| 51957-9 | http://loinc.org | Placer DNA analysis test identifier [Identifier] |
| 19772-3 | http://loinc.org | Preparation techniques [Type] in Cervical or vaginal smear or scraping by Cyto stain |
| 51959-5 | http://loinc.org | Range(s) of DNA sequence examined |
| 53577-3 | http://loinc.org | Reason for study |
| 62385-0 | http://loinc.org | Recommendation [Interpretation] Document |
| 62366-0 | http://loinc.org | Recommended follow-up [Identifier] |
| 19773-1 | http://loinc.org | Recommended follow-up [Identifier] in Cervical or vaginal smear or scraping by Cyto stain |
| 53045-1 | http://loinc.org | Reference sequence alteration [Identifier] |
| 19768-1 | http://loinc.org | Reviewing cytologist who read Cyto stain of Cervical or vaginal smear or scraping |
| 19771-5 | http://loinc.org | Screening techniques [Identifier] in Cervical or vaginal smear or scraping by Cyto stain |
| 19763-2 | http://loinc.org | Specimen source [Identifier] in Cervical or vaginal smear or scraping by Cyto stain |
| 19764-0 | http://loinc.org | Statement of adequacy [Interpretation] of Cervical or vaginal smear or scraping by Cyto stain |
| 62364-5 | http://loinc.org | Test performance information in Specimen Narrative |
| 51958-7 | http://loinc.org | Transcript reference sequence [ID] |
| 11270-6 | http://loinc.org | Viral inclusion bodies [Identifier] in Specimen by Cyto stain |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |