INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/cqframework/mct-ig --branch master repo DEBUG:root:Time to deadline 35879.997368 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.174183 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35876.903206 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 120 packages in 5s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.8.1 npm notice Changelog: npm notice Run `npm install -g npm@10.8.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/cqframework/mct-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35871.209655 seconds FHIR IG Publisher Version 1.6.11 (Git# c24a6a19351a). Built 2024-06-07T06:35:31.259Z (19 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/cqframework/mct-ig/ -out /scratch/repo Start Clock @ Wednesday, June 26, 2024, 5:54:32 PM Coordinated Universal Time (2024-06-26T17:54:32Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.028, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.032, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.035, 89Mb) Load Template from cqf.fhir.template#0.6.0 (00:01.210 / 00:01.246, 69Mb) Installing cqf.fhir.template#0.6.0 to the package cache Fetching: Installing cqf.fhir.template#0.6.0 done. Load Template from fhir.base.template#0.8.0 (00:01.355 / 00:02.601, 101Mb) Installing fhir.base.template#0.8.0 to the package cache Fetching: Installing fhir.base.template#0.8.0 done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/repo/template/onLoad-ig-working.xml to /scratch/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/repo (00:05.595 / 00:08.196, 129Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:08.198, 129Mb) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.core#4.0.1 done. Running Terminology Log: /tmp/ohfu-fhir-ig-4581200999507022747.log Connect to Terminology Server at http://tx.fhir.org (00:48.384 / 00:56.583, 721Mb) Installing hl7.fhir.pubpack#0.1.7 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.7 done. Load Package hl7.fhir.pubpack#0.1.7 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#5.5.0 to the package cache Fetching: Installing hl7.terminology.r4#5.5.0 done. Load Package hl7.terminology.r4#5.5.0 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#5.1.0 done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing fhir.cqf.common#4.0.1 to the package cache Fetching: Installing fhir.cqf.common#4.0.1 done. Installing hl7.fhir.uv.cpg#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.cpg#1.0.0 done. Load Package hl7.fhir.uv.cpg#1.0.0 Load Package fhir.cqf.common#4.0.1 Load Package hl7.fhir.uv.cpg#1.0.0 Installing hl7.fhir.us.cqfmeasures#3.0.0 to the package cache Fetching: Installing hl7.fhir.us.cqfmeasures#3.0.0 done. Installing hl7.fhir.us.qicore#4.1.1 to the package cache Fetching: Installing hl7.fhir.us.qicore#4.1.1 done. Installing hl7.fhir.us.core#3.1.1 to the package cache Fetching: Installing hl7.fhir.us.core#3.1.1 done. Load Package hl7.fhir.us.core#3.1.1 Installing us.nlm.vsac#0.4.0 to the package cache Fetching: Installing us.nlm.vsac#0.4.0 done. Load Package us.nlm.vsac#0.4.0 Load Package hl7.fhir.us.qicore#4.1.1 Load Package hl7.fhir.us.cqfmeasures#3.0.0 Installing hl7.fhir.us.davinci-deqm#3.1.0 to the package cache Fetching: Installing hl7.fhir.us.davinci-deqm#3.1.0 done. Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: Installing hl7.terminology.r4#5.0.0 done. Load Package hl7.terminology.r4#5.0.0 Load Package hl7.fhir.us.davinci-deqm#3.1.0 Load Package hl7.fhir.us.core#3.1.1 Load Package hl7.fhir.us.qicore#4.1.1 Installing hl7.fhir.uv.tools#0.2.0 to the package cache Fetching: Installing hl7.fhir.uv.tools#0.2.0 done. Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.tools' is from version 5.0.0 (will try to run anyway) (02:26.034 / 03:22.617, 825Mb) Load Package hl7.fhir.uv.tools#0.2.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (00:03.853 / 03:26.470, 592Mb) Load Content (00:00.000 / 03:26.471, 592Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent loadPrePages from FetchedFile[/scratch/repo/input/pagecontent/test-case] as /scratch/repo/input/pagecontent loadPrePages from FetchedFile[/scratch/repo/input/pagecontent/test-case/numerator] as /scratch/repo/input/pagecontent loadPrePages from FetchedFile[/scratch/repo/input/pagecontent/test-case/initial-population] as /scratch/repo/input/pagecontent loadPrePages from FetchedFile[/scratch/repo/input/pagecontent/test-case/denominator-exception] as /scratch/repo/input/pagecontent loadPrePages from FetchedFile[/scratch/repo/input/pagecontent/test-case/facility-bundles] as /scratch/repo/input/pagecontent loadPrePages from FetchedFile[/scratch/repo/input/pagecontent/test-case/ineligible] as /scratch/repo/input/pagecontent loadPrePages from FetchedFile[/scratch/repo/input/pagecontent/test-case/denominator] as /scratch/repo/input/pagecontent loadPrePages from FetchedFile[/scratch/repo/input/pagecontent/test-case/denominator-exclusion] as /scratch/repo/input/pagecontent Fetch http://cms.gov/fhir/mct/package-list.json for version check (00:00.693 / 03:27.165, 668Mb) Processing Conformance Resources (00:01.591 / 03:28.756, 677Mb) Load Dependency Info (00:00.001 / 03:28.758, 677Mb) Load Info (00:00.001 / 03:28.759, 677Mb) Load Resources (00:00.000 / 03:28.760, 682Mb) Load Paths (00:00.258 / 03:29.018, 768Mb) Generating Snapshots (00:00.000 / 03:29.018, 768Mb) Check R4 / R4B (00:00.018 / 03:29.037, 768Mb) Assign Comparison Ids (00:00.024 / 03:29.061, 768Mb) Propagating status (00:00.000 / 03:29.062, 768Mb) Generating Narratives (00:00.000 / 03:29.062, 768Mb) Validating Conformance Resources (00:01.651 / 03:30.714, 1Gb) Check profiles & code systems (00:09.429 / 03:40.144, 1Gb) Check realm rules (00:00.000 / 03:40.144, 1Gb) Previous Version Comparison (00:00.000 / 03:40.145, 1Gb) Validating Resources (00:00.010 / 03:40.156, 1Gb) Processing Provenance Records (00:00.169 / 03:40.325, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 03:40.325, 1Gb) Generate Native Outputs (00:00.318 / 03:40.644, 1Gb) Run Template (00:02.124 / 03:42.768, 1Gb) onGenerate.checkVersions: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/versions.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.getVersions.xslt onGenerate.r5-schemas: [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-single.xsd [get] Not modified - so not downloaded [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Not modified - so not downloaded [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xml.xsd [get] Not modified - so not downloaded [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd [get] Not modified - so not downloaded onGenerate.r4-schemas: [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-single.xsd [get] Not modified - so not downloaded [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Not modified - so not downloaded [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xml.xsd [get] Not modified - so not downloaded [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd [get] Not modified - so not downloaded onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 19 files to /scratch/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.1.xml to /scratch/repo/template/onGenerate-ig-working.2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.groupSort.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.2.xml to /scratch/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.extend: onGenerate: Template Done (00:00.826 / 03:43.595, 1Gb) Generate HTML Outputs (00:00.000 / 03:43.596, 1Gb) ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/bundle_post.sh for _includes/bundle_post.sh in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:01.835 / 03:45.431, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/numerator/numerator-expected-result.json for _includes/test-case/numerator/numerator-expected-result.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.018 / 03:45.450, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/numerator/numerator-test-bundle.json for _includes/test-case/numerator/numerator-test-bundle.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.017 / 03:45.468, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/initial-population/initial-population-test-bundle.json for _includes/test-case/initial-population/initial-population-test-bundle.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.020 / 03:45.488, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/initial-population/initial-population-expected-result.json for _includes/test-case/initial-population/initial-population-expected-result.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.018 / 03:45.506, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/denominator-exception/denominator-exception-test-bundle.json for _includes/test-case/denominator-exception/denominator-exception-test-bundle.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.019 / 03:45.525, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/denominator-exception/denominator-exception-expected-result.json for _includes/test-case/denominator-exception/denominator-exception-expected-result.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.018 / 03:45.544, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/facility-bundles/facility-b-expected-response.json for _includes/test-case/facility-bundles/facility-b-expected-response.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.016 / 03:45.561, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/facility-bundles/facility-b-bundle.json for _includes/test-case/facility-bundles/facility-b-bundle.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.015 / 03:45.576, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/facility-bundles/facility-a-expected-response.json for _includes/test-case/facility-bundles/facility-a-expected-response.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.015 / 03:45.591, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/facility-bundles/facility-a-bundle.json for _includes/test-case/facility-bundles/facility-a-bundle.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.015 / 03:45.607, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/facility-bundles/aggregate-expected-response.json for _includes/test-case/facility-bundles/aggregate-expected-response.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.016 / 03:45.623, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/ineligible/ineligible-expected-result.json for _includes/test-case/ineligible/ineligible-expected-result.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.014 / 03:45.638, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/ineligible/ineligible-test-bundle.json for _includes/test-case/ineligible/ineligible-test-bundle.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.015 / 03:45.654, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/denominator/denominator-expected-result.json for _includes/test-case/denominator/denominator-expected-result.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.016 / 03:45.671, 1Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/denominator/denominator-test-bundle.json for _includes/test-case/denominator/denominator-test-bundle.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.016 / 03:45.687, 2Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/denominator-exclusion/denominator-exclusion-expected-result.json for _includes/test-case/denominator-exclusion/denominator-exclusion-expected-result.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.016 / 03:45.704, 2Gb) XSLT Error: Error reported by XML parser Exception generating xslt page /scratch/repo/temp/pages/_includes/test-case/denominator-exclusion/denominator-exclusion-test-bundle.json for _includes/test-case/denominator-exclusion/denominator-exclusion-test-bundle.json in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:00.015 / 03:45.720, 2Gb) Generate Summaries (00:00.114 / 03:45.834, 2Gb) Generating Summary Outputs (00:00.000 / 03:45.834, 2Gb) DB Cumulative Time invested: 00:00:00.444 Sending Usage Stats to Server (00:07.265 / 03:53.100, 1Gb) ## Memory (MB): Use = 1118, Free = 17889, Total = 19008, Max = 19008 (00:00.011 / 03:53.112, 1Gb) Reclaiming memory... (00:00.000 / 03:53.112, 1Gb) ## Memory (MB): Use = 922, Free = 18085, Total = 19008, Max = 19008 (00:00.746 / 03:53.859, 930Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.010 / 03:53.869, 930Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.009 / 03:53.878, 930Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 03:53.879, 930Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 03:53.879, 930Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.845 / 03:54.725, 946Mb) Jekyll: Generating... (00:00.000 / 03:54.726, 946Mb) Jekyll: done in 1.321 seconds. (00:01.319 / 03:56.045, 946Mb) Checking Output HTML (00:01.758 / 03:57.803, 1Gb) found 732 files (00:00.008 / 03:57.812, 1Gb) ........................................ ........................................ Publishing Content Failed: The