INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/costateixeira/zimtest --branch master repo DEBUG:root:Time to deadline 35879.998099 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.731552 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.511862 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 5s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/zimtest/ -out /scratch/repo DEBUG:root:Time to deadline 35873.367628 seconds FHIR IG Publisher Version 2.0.26 (Git# 0a43ac207d1f). Built 2025-11-06T09:21:35.314Z (4 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/zimtest/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, November 11, 2025, 8:50:27 AM Coordinated Universal Time (2025-11-11T08:50:27Z) Build FHIR IG from /scratch/repo (00:00.022 / 00:00.023, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.025, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.028, 97Mb) Run Sushi on /scratch/repo (00:00.005 / 00:00.033, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.553 / 00:00.586, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.587, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.587, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.587, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.588, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.523 / 00:01.111, 113Mb) Sushi: info Importing FSH text... (00:00.129 / 00:01.241, 113Mb) Sushi: info Preprocessed 0 documents with 0 aliases. (00:00.000 / 00:01.241, 113Mb) Sushi: info Imported 0 definitions and 0 instances. (00:00.000 / 00:01.242, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.095 / 00:01.337, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.606 / 00:01.944, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:01.945, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.910 / 00:02.855, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:02.858, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.058 / 00:02.916, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.490 / 00:03.407, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:03.408, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.960 / 00:06.368, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:06.370, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.240 / 00:07.610, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.488 / 00:08.099, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:08.099, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.527 / 00:09.626, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:09.627, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.212 / 00:09.840, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:09.840, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.284 / 00:13.125, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:13.126, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.184 / 00:14.310, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.009 / 00:14.320, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.320, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.320, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.320, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.321, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.321, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:14.321, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.014 / 00:14.336, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.007 / 00:14.344, 113Mb) Sushi: info Exported 0 FHIR resources as JSON. (00:00.000 / 00:14.344, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.000 / 00:14.344, 113Mb) Sushi: warn (00:00.016 / 00:14.361, 113Mb) Sushi: !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! IMPORTANT !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! (00:00.000 / 00:14.361, 113Mb) Sushi: Your ig.ini file does NOT point to the Implementation Guide resource that SUSHI generates. As a (00:00.000 / 00:14.361, 113Mb) Sushi: result, the IG Publisher will IGNORE the SUSHI-generated ImplementationGuide resource. To fix this, (00:00.000 / 00:14.362, 113Mb) Sushi: please do one of the following: (00:00.000 / 00:14.362, 113Mb) Sushi: - Update your ig.ini file with 'ig = fsh-generated/resources/ImplementationGuide-my-ig.json' (recommended), or (00:00.000 / 00:14.362, 113Mb) Sushi: - Update your sushi-config.yaml file with 'FSHOnly: true' to tell SUSHI NOT to generate the IG resource (00:00.000 / 00:14.362, 113Mb) Sushi: info Generated ImplementationGuide-my-ig.json (00:00.000 / 00:14.363, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:14.363, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:14.364, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:14.365, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:14.365, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:14.365, 113Mb) Sushi: | | 0 | 0 | 0 | 0 | | (00:00.000 / 00:14.365, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:14.366, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:14.366, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:14.366, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:14.366, 113Mb) Sushi: | | 0 | 0 | 0 | | (00:00.000 / 00:14.366, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:14.367, 113Mb) Sushi: | | (00:00.000 / 00:14.367, 113Mb) Sushi: =================================================================== (00:00.000 / 00:14.367, 113Mb) Sushi: | Don't be koi about asking for help. 0 Errors 1 Warning | (00:00.000 / 00:14.367, 113Mb) Sushi: =================================================================== (00:00.000 / 00:14.367, 113Mb) Root directory: /scratch/repo (00:00.021 / 00:14.389, 113Mb) Load Template from openhie.fhir.template#current (00:00.942 / 00:15.331, 86Mb) Installing openhie.fhir.template#current to the package cache  Fetching:  Installing openhie.fhir.template#current  done.  Load Template from fhir.base.template#1.0.0 (00:01.374 / 00:16.706, 120Mb) Installing fhir.base.template#1.0.0 to the package cache  Fetching:  Installing fhir.base.template#1.0.0  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.914 / 00:20.620, 416Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:20.621, 416Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-12951152163782440216.html Connect to Terminology Server at http://tx.fhir.org (00:30.193 / 00:50.814, 609Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:07.633 / 00:58.447, 342Mb) Load IG (00:00.000 / 00:58.447, 342Mb) Load Content (00:00.002 / 00:58.450, 344Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.055 / 00:58.506, 344Mb) Translating CQL source (00:00.030 / 00:58.537, 344Mb) Translating CQL source in folder /scratch/repo/input/cql (00:00.000 / 00:58.537, 344Mb) Process Loaded Resources (00:00.032 / 00:58.569, 350Mb) Generating Snapshots (00:00.032 / 00:58.602, 350Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch xxxhttp://somewhere.org/fhir/uv/myig/package-list.json for version check (00:00.050 / 00:58.653, 358Mb) Checking Language (00:00.001 / 00:58.655, 358Mb) Load Dependency Info (00:00.000 / 00:58.655, 358Mb) Load Info (00:00.000 / 00:58.656, 358Mb) Load Paths (00:00.000 / 00:58.656, 358Mb) Check R4 / R4B (00:00.000 / 00:58.656, 358Mb) Assign Comparison Ids (00:00.014 / 00:58.671, 362Mb) Propagating status (00:00.000 / 00:58.671, 362Mb) Generating Narratives (00:00.000 / 00:58.671, 362Mb) Validating Conformance Resources (00:00.111 / 00:58.783, 366Mb) Check profiles & code systems (00:03.081 / 01:01.864, 522Mb) Check realm rules (00:00.000 / 01:01.865, 522Mb) Previous Version Comparison (00:00.000 / 01:01.865, 522Mb) Checking for Bundles to sign (00:00.009 / 01:01.874, 522Mb) Validating Resources (00:00.000 / 01:01.874, 522Mb) Processing Provenance Records (00:00.000 / 01:01.874, 522Mb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:01.875, 522Mb) Generate Native Outputs (00:00.257 / 01:02.133, 535Mb) Run Template (00:00.076 / 01:02.209, 543Mb) Generate HTML Outputs (00:00.943 / 01:03.153, 599Mb) Generate Spreadsheets (00:00.182 / 01:03.336, 623Mb) Generate Summaries (00:00.000 / 01:03.336, 623Mb) Generating Summary Outputs (00:00.000 / 01:03.336, 623Mb) DB Cumulative Time invested: 00:00:00.164 Sending Usage Stats to Server (00:02.901 / 01:06.237, 679Mb) ## Memory (MB): Use = 679, Free = 18328, Total = 19008, Max = 19008 (00:00.005 / 01:06.243, 683Mb) Reclaiming memory... (00:00.000 / 01:06.244, 683Mb) ## Memory (MB): Use = 310, Free = 18697, Total = 19008, Max = 19008 (00:00.253 / 01:06.498, 321Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.002 / 01:06.500, 321Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 01:06.500, 321Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:06.500, 321Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:06.500, 322Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.423 / 01:06.923, 333Mb) Jekyll: Generating... (00:00.000 / 01:06.923, 333Mb) Jekyll: done in 0.131 seconds. (00:00.130 / 01:07.054, 333Mb) Checking Output HTML (00:00.536 / 01:07.590, 390Mb) Processed /scratch/repo/output - % reduction = 74 (104103 ==> 27448) found 598 files (00:00.060 / 01:07.650, 406Mb) .......................................... .......................................... ... 598 html files, 1 page invalid xhtml (0%) (00:00.436 / 01:08.087, 702Mb) ... 149 links, 11 broken link (7%) (00:00.000 / 01:08.088, 702Mb) Publishing Content Failed: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations (00:00.005 / 01:08.094, 702Mb) (00:00.000 / 01:08.094, 702Mb) Use -? to get command line help (00:00.000 / 01:08.094, 702Mb) (00:00.000 / 01:08.094, 702Mb) Stack Dump (for debugging): (00:00.000 / 01:08.094, 702Mb) org.hl7.fhir.exceptions.FHIRException: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:506) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:428) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:232) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1579)