INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/costateixeira/wftests --branch master repo DEBUG:root:Time to deadline 35879.99782 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.279357 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.159567 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 5s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.1 npm notice Changelog: npm notice Run `npm install -g npm@11.5.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/wftests/ -out /scratch/repo DEBUG:root:Time to deadline 35872.46101 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (61 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/wftests/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, July 25, 2025, 8:00:16 PM Coordinated Universal Time (2025-07-25T20:00:16Z) Build FHIR IG from /scratch/repo (00:00.021 / 00:00.021, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.023, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.026, 97Mb) Run Sushi on /scratch/repo (00:00.004 / 00:00.030, 97Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.571 / 00:00.602, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.602, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.602, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.603, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.603, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.584 / 00:01.188, 113Mb) Sushi: info Importing FSH text... (00:00.116 / 00:01.305, 113Mb) Sushi: info Preprocessed 0 documents with 0 aliases. (00:00.000 / 00:01.305, 113Mb) Sushi: info Imported 0 definitions and 0 instances. (00:00.000 / 00:01.306, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.099 / 00:01.405, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.7.0 (00:00.620 / 00:02.025, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.7.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.7.0 (00:00.000 / 00:02.026, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.7.0 (00:00.873 / 00:02.899, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.7.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.7.0 (00:00.003 / 00:02.902, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.7.0 with 105 resources (00:00.057 / 00:02.959, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.458 / 00:03.418, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:03.418, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.811 / 00:06.230, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:06.231, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.266 / 00:07.498, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.485 / 00:07.984, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:07.985, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.440 / 00:09.425, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:09.426, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.222 / 00:09.648, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:09.649, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.983 / 00:12.633, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:12.634, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.120 / 00:13.755, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.012 / 00:13.767, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:13.768, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:13.768, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:13.768, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:13.769, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:13.769, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:13.769, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.016 / 00:13.786, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.005 / 00:13.791, 113Mb) Sushi: info Exported 0 FHIR resources as JSON. (00:00.002 / 00:13.794, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.000 / 00:13.794, 113Mb) Sushi: warn (00:00.015 / 00:13.810, 113Mb) Sushi: !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! IMPORTANT !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! (00:00.000 / 00:13.810, 113Mb) Sushi: Your ig.ini file does NOT point to the Implementation Guide resource that SUSHI generates. As a (00:00.000 / 00:13.810, 113Mb) Sushi: result, the IG Publisher will IGNORE the SUSHI-generated ImplementationGuide resource. To fix this, (00:00.000 / 00:13.811, 113Mb) Sushi: please do one of the following: (00:00.000 / 00:13.811, 113Mb) Sushi: - Update your ig.ini file with 'ig = fsh-generated/resources/ImplementationGuide-my-ig.json' (recommended), or (00:00.000 / 00:13.811, 113Mb) Sushi: - Update your sushi-config.yaml file with 'FSHOnly: true' to tell SUSHI NOT to generate the IG resource (00:00.000 / 00:13.811, 113Mb) Sushi: info Generated ImplementationGuide-my-ig.json (00:00.000 / 00:13.811, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:13.812, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:13.814, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:13.814, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:13.815, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:13.815, 113Mb) Sushi: | | 0 | 0 | 0 | 0 | | (00:00.000 / 00:13.815, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:13.815, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:13.816, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:13.816, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:13.816, 113Mb) Sushi: | | 0 | 0 | 0 | | (00:00.000 / 00:13.816, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:13.816, 113Mb) Sushi: | | (00:00.000 / 00:13.817, 113Mb) Sushi: =================================================================== (00:00.000 / 00:13.817, 113Mb) Sushi: | Not bad, but you cod do batter! 0 Errors 1 Warning | (00:00.000 / 00:13.817, 113Mb) Sushi: =================================================================== (00:00.000 / 00:13.817, 113Mb) Load Template from openhie.fhir.template#current (00:01.069 / 00:14.887, 85Mb) Installing openhie.fhir.template#current to the package cache  Fetching:  Installing openhie.fhir.template#current  done.  Load Template from fhir.base.template#current (00:01.403 / 00:16.290, 113Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:03.136 / 00:19.427, 408Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.003 / 00:19.431, 408Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-15489700484447965806.html Connect to Terminology Server at http://tx.fhir.org (00:31.967 / 00:51.398, 249Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.7.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:09.857 / 01:01.255, 343Mb) Load IG (00:00.000 / 01:01.255, 343Mb) Load Content (00:00.000 / 01:01.256, 343Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.060 / 01:01.317, 351Mb) Translating CQL source (00:00.034 / 01:01.351, 351Mb) Translating CQL source in folder /scratch/repo/input/cql (00:00.000 / 01:01.351, 351Mb) Process Loaded Resources (00:00.037 / 01:01.388, 351Mb) Generating Snapshots (00:00.041 / 01:01.430, 351Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch xxxhttp://somewhere.org/fhir/uv/myig/package-list.json for version check (00:00.062 / 01:01.492, 360Mb) Processing Conformance Resources (00:00.002 / 01:01.495, 360Mb) Checking Language (00:00.000 / 01:01.495, 360Mb) Load Dependency Info (00:00.000 / 01:01.495, 360Mb) Load Info (00:00.001 / 01:01.496, 360Mb) Load Paths (00:00.000 / 01:01.496, 364Mb) Check R4 / R4B (00:00.000 / 01:01.497, 364Mb) Assign Comparison Ids (00:00.014 / 01:01.512, 364Mb) Propagating status (00:00.000 / 01:01.512, 364Mb) Generating Narratives (00:00.000 / 01:01.512, 364Mb) Validating Conformance Resources (00:00.133 / 01:01.646, 375Mb) Check profiles & code systems (00:07.232 / 01:08.878, 991Mb) Check realm rules (00:00.000 / 01:08.878, 991Mb) Previous Version Comparison (00:00.000 / 01:08.878, 991Mb) Checking for Bundles to sign (00:00.010 / 01:08.889, 999Mb) Validating Resources (00:00.000 / 01:08.889, 999Mb) Processing Provenance Records (00:00.000 / 01:08.889, 999Mb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:08.890, 999Mb) Generate Native Outputs (00:00.224 / 01:09.114, 1001Mb) Run Template (00:00.083 / 01:09.197, 1007Mb) Generate HTML Outputs (00:00.943 / 01:10.141, 353Mb) Generate Spreadsheets (00:00.197 / 01:10.339, 369Mb) Generate Summaries (00:00.000 / 01:10.339, 369Mb) Generating Summary Outputs (00:00.000 / 01:10.339, 369Mb) DB Cumulative Time invested: 00:00:00.204 Sending Usage Stats to Server (00:02.941 / 01:13.280, 400Mb) ## Memory (MB): Use = 400, Free = 18607, Total = 19008, Max = 19008 (00:00.004 / 01:13.286, 403Mb) Reclaiming memory... (00:00.000 / 01:13.286, 403Mb) ## Memory (MB): Use = 278, Free = 18729, Total = 19008, Max = 19008 (00:00.266 / 01:13.552, 286Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 01:13.554, 290Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 01:13.554, 290Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:13.554, 290Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:13.554, 290Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.424 / 01:13.979, 299Mb) Jekyll: Generating... (00:00.000 / 01:13.979, 299Mb) Jekyll: done in 0.142 seconds. (00:00.142 / 01:14.121, 299Mb) Checking Output HTML (00:00.561 / 01:14.682, 358Mb) found 592 files (00:00.004 / 01:14.686, 358Mb) .......................................... .......................................... ... 592 html files, 1 page invalid xhtml (0%) (00:00.636 / 01:15.323, 638Mb) ... 149 links, 11 broken link (7%) (00:00.000 / 01:15.323, 638Mb) Publishing Content Failed: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations (00:00.003 / 01:15.326, 638Mb) (00:00.000 / 01:15.326, 638Mb) Use -? to get command line help (00:00.000 / 01:15.326, 638Mb) (00:00.000 / 01:15.326, 638Mb) Stack Dump (for debugging): (00:00.000 / 01:15.326, 638Mb) org.hl7.fhir.exceptions.FHIRException: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:9128) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1199) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1029) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:15805)