INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/costateixeira/testwf --branch master repo DEBUG:root:Time to deadline 35879.997563 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.629927 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.460451 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 5s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.1 npm notice Changelog: npm notice Run `npm install -g npm@11.5.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/testwf/ -out /scratch/repo DEBUG:root:Time to deadline 35872.766675 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (61 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/testwf/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, July 25, 2025, 7:59:38 PM Coordinated Universal Time (2025-07-25T19:59:38Z) Build FHIR IG from /scratch/repo (00:00.023 / 00:00.023, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.025, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.028, 97Mb) Run Sushi on /scratch/repo (00:00.005 / 00:00.033, 97Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.579 / 00:00.613, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.613, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.614, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.614, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.614, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.598 / 00:01.213, 113Mb) Sushi: info Importing FSH text... (00:00.124 / 00:01.338, 113Mb) Sushi: info Preprocessed 0 documents with 0 aliases. (00:00.000 / 00:01.338, 113Mb) Sushi: info Imported 0 definitions and 0 instances. (00:00.000 / 00:01.339, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.120 / 00:01.459, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.7.0 (00:00.576 / 00:02.036, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.7.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.7.0 (00:00.000 / 00:02.037, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.7.0 (00:00.863 / 00:02.900, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.7.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.7.0 (00:00.003 / 00:02.903, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.7.0 with 105 resources (00:00.131 / 00:03.035, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.454 / 00:03.489, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:03.490, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.793 / 00:06.284, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:06.285, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.356 / 00:07.642, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.461 / 00:08.103, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.001 / 00:08.104, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.628 / 00:09.733, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:09.734, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.520 / 00:10.254, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:10.255, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.268 / 00:13.523, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:13.524, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.615 / 00:15.140, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.011 / 00:15.151, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.151, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.151, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.152, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.152, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:15.152, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:15.152, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.018 / 00:15.171, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.008 / 00:15.180, 113Mb) Sushi: info Exported 0 FHIR resources as JSON. (00:00.002 / 00:15.182, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.000 / 00:15.182, 113Mb) Sushi: warn (00:00.017 / 00:15.200, 113Mb) Sushi: !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! IMPORTANT !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! (00:00.000 / 00:15.201, 113Mb) Sushi: Your ig.ini file does NOT point to the Implementation Guide resource that SUSHI generates. As a (00:00.000 / 00:15.201, 113Mb) Sushi: result, the IG Publisher will IGNORE the SUSHI-generated ImplementationGuide resource. To fix this, (00:00.000 / 00:15.202, 113Mb) Sushi: please do one of the following: (00:00.000 / 00:15.202, 113Mb) Sushi: - Update your ig.ini file with 'ig = fsh-generated/resources/ImplementationGuide-my-ig.json' (recommended), or (00:00.000 / 00:15.202, 113Mb) Sushi: - Update your sushi-config.yaml file with 'FSHOnly: true' to tell SUSHI NOT to generate the IG resource (00:00.000 / 00:15.202, 113Mb) Sushi: info Generated ImplementationGuide-my-ig.json (00:00.000 / 00:15.203, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:15.203, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.000 / 00:15.204, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:15.204, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:15.204, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:15.205, 113Mb) Sushi: | | 0 | 0 | 0 | 0 | | (00:00.000 / 00:15.205, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:15.205, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:15.205, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:15.206, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:15.206, 113Mb) Sushi: | | 0 | 0 | 0 | | (00:00.000 / 00:15.206, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:15.206, 113Mb) Sushi: | | (00:00.000 / 00:15.207, 113Mb) Sushi: =================================================================== (00:00.000 / 00:15.207, 113Mb) Sushi: | Warnings... Water those about? 0 Errors 1 Warning | (00:00.000 / 00:15.207, 113Mb) Sushi: =================================================================== (00:00.000 / 00:15.207, 113Mb) Load Template from openhie.fhir.template#current (00:01.112 / 00:16.320, 86Mb) Installing openhie.fhir.template#current to the package cache  Fetching:  Installing openhie.fhir.template#current  done.  Load Template from fhir.base.template#current (00:01.288 / 00:17.608, 120Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:03.372 / 00:20.980, 408Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:20.983, 408Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-14398002525206894615.html Connect to Terminology Server at http://tx.fhir.org (00:31.247 / 00:52.230, 276Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.7.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:10.189 / 01:02.419, 368Mb) Load IG (00:00.000 / 01:02.420, 368Mb) Load Content (00:00.000 / 01:02.421, 368Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.068 / 01:02.489, 376Mb) Translating CQL source (00:00.033 / 01:02.522, 376Mb) Translating CQL source in folder /scratch/repo/input/cql (00:00.000 / 01:02.523, 376Mb) Process Loaded Resources (00:00.042 / 01:02.565, 376Mb) Generating Snapshots (00:00.033 / 01:02.598, 376Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch xxxhttp://somewhere.org/fhir/uv/myig/package-list.json for version check (00:00.062 / 01:02.661, 384Mb) Processing Conformance Resources (00:00.001 / 01:02.663, 384Mb) Checking Language (00:00.000 / 01:02.663, 384Mb) Load Dependency Info (00:00.000 / 01:02.663, 384Mb) Load Info (00:00.000 / 01:02.664, 384Mb) Load Paths (00:00.000 / 01:02.665, 388Mb) Check R4 / R4B (00:00.000 / 01:02.665, 388Mb) Assign Comparison Ids (00:00.015 / 01:02.681, 388Mb) Propagating status (00:00.000 / 01:02.681, 388Mb) Generating Narratives (00:00.000 / 01:02.681, 388Mb) Validating Conformance Resources (00:00.140 / 01:02.821, 400Mb) Check profiles & code systems (00:07.037 / 01:09.858, 1018Mb) Check realm rules (00:00.000 / 01:09.859, 1018Mb) Previous Version Comparison (00:00.000 / 01:09.859, 1018Mb) Checking for Bundles to sign (00:00.010 / 01:09.869, 1018Mb) Validating Resources (00:00.000 / 01:09.869, 1018Mb) Processing Provenance Records (00:00.000 / 01:09.870, 1018Mb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:09.870, 1018Mb) Generate Native Outputs (00:00.193 / 01:10.063, 1021Mb) Run Template (00:00.074 / 01:10.137, 1Gb) Generate HTML Outputs (00:01.013 / 01:11.151, 359Mb) Generate Spreadsheets (00:00.177 / 01:11.329, 375Mb) Generate Summaries (00:00.000 / 01:11.329, 375Mb) Generating Summary Outputs (00:00.000 / 01:11.329, 375Mb) DB Cumulative Time invested: 00:00:00.171 Sending Usage Stats to Server (00:03.102 / 01:14.432, 413Mb) ## Memory (MB): Use = 413, Free = 18594, Total = 19008, Max = 19008 (00:00.005 / 01:14.437, 425Mb) Reclaiming memory... (00:00.000 / 01:14.438, 425Mb) ## Memory (MB): Use = 278, Free = 18729, Total = 19008, Max = 19008 (00:00.263 / 01:14.702, 286Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 01:14.703, 290Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 01:14.704, 290Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:14.704, 290Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:14.704, 290Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.443 / 01:15.148, 294Mb) Jekyll: Generating... (00:00.000 / 01:15.148, 294Mb) Jekyll: done in 0.143 seconds. (00:00.142 / 01:15.291, 294Mb) Checking Output HTML (00:00.565 / 01:15.856, 358Mb) found 592 files (00:00.004 / 01:15.861, 358Mb) .......................................... .......................................... ... 592 html files, 1 page invalid xhtml (0%) (00:00.660 / 01:16.522, 638Mb) ... 149 links, 11 broken link (7%) (00:00.000 / 01:16.522, 638Mb) Publishing Content Failed: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations (00:00.003 / 01:16.526, 638Mb) (00:00.000 / 01:16.526, 638Mb) Use -? to get command line help (00:00.000 / 01:16.526, 638Mb) (00:00.000 / 01:16.526, 638Mb) Stack Dump (for debugging): (00:00.000 / 01:16.526, 638Mb) org.hl7.fhir.exceptions.FHIRException: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:9128) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1199) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1029) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:15805)