INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/costateixeira/historytest --branch master repo DEBUG:root:Time to deadline 35879.997229 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.277615 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.357928 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.1 npm notice Changelog: npm notice Run `npm install -g npm@11.5.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/historytest/ -out /scratch/repo DEBUG:root:Time to deadline 35872.208473 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (61 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/historytest/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, July 25, 2025, 8:01:11 PM Coordinated Universal Time (2025-07-25T20:01:11Z) Build FHIR IG from /scratch/repo (00:00.026 / 00:00.026, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.028, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.031, 97Mb) Run Sushi on /scratch/repo (00:00.005 / 00:00.036, 97Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.621 / 00:00.657, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.658, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.658, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.659, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.659, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.633 / 00:01.293, 113Mb) Sushi: info Importing FSH text... (00:00.128 / 00:01.421, 113Mb) Sushi: info Preprocessed 1 documents with 0 aliases. (00:00.063 / 00:01.485, 113Mb) Sushi: info Imported 3 definitions and 1 instances. (00:00.006 / 00:01.492, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.097 / 00:01.590, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.7.0 (00:00.578 / 00:02.168, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.7.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.7.0 (00:00.001 / 00:02.169, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.7.0 (00:00.786 / 00:02.956, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.7.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.7.0 (00:00.003 / 00:02.960, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.7.0 with 105 resources (00:00.069 / 00:03.029, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.431 / 00:03.461, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:03.461, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.021 / 00:06.483, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.002 / 00:06.485, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.390 / 00:07.876, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.436 / 00:08.312, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:08.313, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.393 / 00:09.706, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:09.708, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.270 / 00:09.978, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:09.979, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.858 / 00:12.837, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.002 / 00:12.839, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.156 / 00:13.995, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.012 / 00:14.008, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.008, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.009, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.009, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.009, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.009, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:14.010, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.017 / 00:14.028, 113Mb) Sushi: info Converted 2 FHIR StructureDefinitions. (00:00.075 / 00:14.103, 113Mb) Sushi: info Converted 1 FHIR ValueSets. (00:00.016 / 00:14.120, 113Mb) Sushi: info Converted 1 FHIR instances. (00:00.064 / 00:14.184, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:14.185, 113Mb) Sushi: info Exported 4 FHIR resources as JSON. (00:00.011 / 00:14.196, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:14.198, 113Mb) Sushi: info Generated ImplementationGuide-my-ig.json (00:00.015 / 00:14.214, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:14.214, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:14.216, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:14.216, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:14.216, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:14.217, 113Mb) Sushi: | | 1 | 0 | 1 | 0 | | (00:00.000 / 00:14.217, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:14.217, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:14.217, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:14.218, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:14.218, 113Mb) Sushi: | | 1 | 0 | 1 | | (00:00.000 / 00:14.219, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:14.219, 113Mb) Sushi: | | (00:00.000 / 00:14.219, 113Mb) Sushi: =================================================================== (00:00.000 / 00:14.219, 113Mb) Sushi: | You are dolphinitely doing great! 0 Errors 0 Warnings | (00:00.000 / 00:14.220, 113Mb) Sushi: =================================================================== (00:00.000 / 00:14.220, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.708 / 00:14.929, 37Mb) Load Template from openhie.fhir.template#current (00:00.495 / 00:15.424, 93Mb) Installing openhie.fhir.template#current to the package cache  Fetching:  Installing openhie.fhir.template#current  done.  Load Template from fhir.base.template#current (00:01.482 / 00:16.907, 112Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:03.434 / 00:20.341, 399Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:20.344, 399Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-9132261350130247533.html Connect to Terminology Server at http://tx.fhir.org (00:45.553 / 01:05.898, 269Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.7.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:09.943 / 01:15.841, 359Mb) Load IG (00:00.000 / 01:15.841, 359Mb) Load Content (00:00.000 / 01:15.842, 359Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.068 / 01:15.911, 359Mb) Process Loaded Resources (00:00.225 / 01:16.137, 367Mb) Generating Snapshots (00:00.092 / 01:16.229, 367Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://example.com/fhir/example/package-list.json for version check (00:00.188 / 01:16.418, 399Mb) Processing Conformance Resources (00:00.382 / 01:16.801, 399Mb) Checking Language (00:00.000 / 01:16.801, 399Mb) Load Dependency Info (00:00.000 / 01:16.801, 399Mb) Load Info (00:00.001 / 01:16.803, 399Mb) Load Paths (00:00.000 / 01:16.803, 404Mb) Check R4 / R4B (00:00.000 / 01:16.803, 404Mb) Assign Comparison Ids (00:00.013 / 01:16.817, 404Mb) Propagating status (00:00.000 / 01:16.818, 404Mb) Generating Narratives (00:00.000 / 01:16.818, 404Mb) Validating Conformance Resources (00:00.385 / 01:17.204, 447Mb) Check profiles & code systems (00:07.315 / 01:24.519, 1Gb) Check realm rules (00:00.001 / 01:24.520, 1Gb) Previous Version Comparison (00:00.000 / 01:24.520, 1Gb) Checking for Bundles to sign (00:00.012 / 01:24.533, 1Gb) Validating Resources (00:00.000 / 01:24.533, 1Gb) Processing Provenance Records (00:00.246 / 01:24.780, 431Mb) Generating Outputs in /scratch/repo/output (00:00.014 / 01:24.794, 431Mb) Generate Native Outputs (00:00.383 / 01:25.178, 321Mb) Run Template (00:00.408 / 01:25.586, 359Mb) Generate HTML Outputs (00:01.083 / 01:26.669, 423Mb) Generate Spreadsheets (00:01.821 / 01:28.491, 671Mb) Generate Summaries (00:01.085 / 01:29.577, 775Mb) Generating Summary Outputs (00:00.000 / 01:29.577, 775Mb) DB Cumulative Time invested: 00:00:00.391 Sending Usage Stats to Server (00:03.132 / 01:32.709, 683Mb) ## Memory (MB): Use = 683, Free = 18324, Total = 19008, Max = 19008 (00:00.008 / 01:32.718, 687Mb) Reclaiming memory... (00:00.000 / 01:32.719, 687Mb) ## Memory (MB): Use = 303, Free = 18704, Total = 19008, Max = 19008 (00:00.375 / 01:33.095, 311Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 01:33.096, 311Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 01:33.096, 311Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:33.096, 311Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:33.096, 311Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.485 / 01:33.582, 315Mb) Jekyll: Generating... (00:00.000 / 01:33.582, 315Mb) Jekyll: done in 0.297 seconds. (00:00.296 / 01:33.879, 315Mb) Checking Output HTML (00:00.763 / 01:34.642, 403Mb) found 644 files (00:00.004 / 01:34.647, 403Mb) ........................................ ........................................ ... 644 html files, 1 page invalid xhtml (0%) (00:01.382 / 01:36.029, 1Gb) ... 10362 links, 6 broken link (0%) (00:00.000 / 01:36.030, 1Gb) Publishing Content Failed: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations (00:00.006 / 01:36.036, 1Gb) (00:00.000 / 01:36.037, 1Gb) Use -? to get command line help (00:00.000 / 01:36.037, 1Gb) (00:00.000 / 01:36.037, 1Gb) Stack Dump (for debugging): (00:00.000 / 01:36.037, 1Gb) org.hl7.fhir.exceptions.FHIRException: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:9128) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1199) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1029) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:15805)