INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/costateixeira/PackageTest --branch master repo DEBUG:root:Time to deadline 35879.997491 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.374049 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.250144 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 7s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.1 npm notice Changelog: npm notice Run `npm install -g npm@11.5.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/PackageTest/ -out /scratch/repo DEBUG:root:Time to deadline 35871.234634 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (61 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/PackageTest/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, July 25, 2025, 8:01:01 PM Coordinated Universal Time (2025-07-25T20:01:01Z) Build FHIR IG from /scratch/repo (00:00.038 / 00:00.039, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.042, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.045, 97Mb) Found dependency on hl7.fhir.uv.ips#current in Sushi config. Pre-installing (00:00.006 / 00:00.051, 97Mb) Installing hl7.fhir.uv.ips#current to the package cache  Fetching:  Installing hl7.fhir.uv.ips#current  done. Run Sushi on /scratch/repo (00:08.368 / 00:08.420, 80Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.648 / 00:09.069, 80Mb) Sushi: info Arguments: (00:00.000 / 00:09.069, 80Mb) Sushi: info --require-latest (00:00.000 / 00:09.070, 80Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:09.070, 80Mb) Sushi: info /scratch/repo (00:00.000 / 00:09.070, 80Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.748 / 00:09.819, 80Mb) Sushi: info Importing FSH text... (00:00.138 / 00:09.958, 80Mb) Sushi: info Preprocessed 2 documents with 40 aliases. (00:00.148 / 00:10.107, 80Mb) Sushi: info Imported 0 definitions and 9 instances. (00:00.010 / 00:10.118, 80Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.118 / 00:10.236, 80Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.7.0 (00:00.672 / 00:10.909, 80Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.7.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.7.0 (00:00.001 / 00:10.909, 80Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.7.0 (00:00.828 / 00:11.738, 80Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.7.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.7.0 (00:00.003 / 00:11.742, 80Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.7.0 with 105 resources (00:00.066 / 00:11.808, 80Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.452 / 00:12.261, 80Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:12.262, 80Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.168 / 00:15.430, 80Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.002 / 00:15.433, 80Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.440 / 00:16.874, 80Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.435 / 00:17.310, 80Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:17.311, 80Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.572 / 00:18.883, 80Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:18.884, 80Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.243 / 00:19.128, 80Mb) Sushi: info Loaded hl7.fhir.uv.ips#current with 67 resources (00:00.161 / 00:19.290, 80Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:19.290, 80Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.501 / 00:22.791, 80Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.002 / 00:22.794, 80Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.288 / 00:24.082, 80Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.010 / 00:24.093, 80Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:24.093, 80Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:24.094, 80Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:24.094, 80Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:24.094, 80Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:24.094, 80Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:24.094, 80Mb) Sushi: info Converting FSH to FHIR resources... (00:00.018 / 00:24.113, 80Mb) Sushi: info Converted 9 FHIR instances. (00:00.819 / 00:24.933, 80Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:24.934, 80Mb) Sushi: info Exported 1 FHIR resources as JSON. (00:00.002 / 00:24.936, 80Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:24.938, 80Mb) Sushi: info Generated ImplementationGuide-my-ig.json (00:00.060 / 00:24.998, 80Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:24.998, 80Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:25.000, 80Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.000, 80Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:25.001, 80Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:25.001, 80Mb) Sushi: | | 0 | 0 | 0 | 0 | | (00:00.000 / 00:25.001, 80Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.001, 80Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.001, 80Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:25.002, 80Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:25.002, 80Mb) Sushi: | | 0 | 0 | 9 | | (00:00.000 / 00:25.002, 80Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.002, 80Mb) Sushi: | | (00:00.000 / 00:25.002, 80Mb) Sushi: =================================================================== (00:00.000 / 00:25.003, 80Mb) Sushi: | You've proven any-fin is possible. 0 Errors 0 Warnings | (00:00.000 / 00:25.003, 80Mb) Sushi: =================================================================== (00:00.000 / 00:25.003, 80Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.713 / 00:25.717, 64Mb) Load Template from openhie.fhir.template#current (00:00.622 / 00:26.339, 65Mb) Installing openhie.fhir.template#current to the package cache  Fetching:  Installing openhie.fhir.template#current  done.  Load Template from fhir.base.template#current (00:00.588 / 00:26.927, 75Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:03.890 / 00:30.818, 369Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:30.820, 369Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-6571701419061793306.html Connect to Terminology Server at http://tx.fhir.org (00:48.650 / 01:19.471, 240Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.ips#current Load Package hl7.fhir.uv.tools.r4#0.7.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:11.452 / 01:30.923, 664Mb) Load IG (00:00.000 / 01:30.924, 664Mb) Load Content (00:00.001 / 01:30.925, 664Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.068 / 01:30.993, 673Mb) Process Loaded Resources (00:00.170 / 01:31.164, 680Mb) Generating Snapshots (00:00.136 / 01:31.301, 689Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://example.com/fhir/my-ig/package-list.json for version check (00:00.087 / 01:31.388, 689Mb) Processing Conformance Resources (00:00.351 / 01:31.740, 689Mb) Checking Language (00:00.000 / 01:31.740, 689Mb) Load Dependency Info (00:00.000 / 01:31.741, 689Mb) Load Info (00:00.001 / 01:31.742, 689Mb) Load Paths (00:00.000 / 01:31.742, 693Mb) Check R4 / R4B (00:00.000 / 01:31.742, 693Mb) Assign Comparison Ids (00:00.016 / 01:31.759, 693Mb) Propagating status (00:00.000 / 01:31.759, 693Mb) Generating Narratives (00:00.000 / 01:31.759, 693Mb) Validating Conformance Resources (00:00.962 / 01:32.722, 945Mb) Check profiles & code systems (00:10.626 / 01:43.349, 578Mb) Check realm rules (00:00.000 / 01:43.350, 578Mb) Previous Version Comparison (00:00.000 / 01:43.350, 578Mb) Checking for Bundles to sign (00:00.013 / 01:43.363, 578Mb) Validating Resources (00:00.000 / 01:43.363, 578Mb) Processing Provenance Records (00:03.636 / 01:47.000, 658Mb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:47.001, 658Mb) Generate Native Outputs (00:00.255 / 01:47.257, 668Mb) Run Template (00:00.164 / 01:47.421, 682Mb) Generate HTML Outputs (00:01.226 / 01:48.648, 381Mb) Generate Spreadsheets (00:00.373 / 01:49.021, 413Mb) Generate Summaries (00:00.000 / 01:49.021, 413Mb) Generating Summary Outputs (00:00.000 / 01:49.021, 413Mb) DB Cumulative Time invested: 00:00:00.241 Sending Usage Stats to Server (00:04.397 / 01:53.419, 790Mb) ## Memory (MB): Use = 790, Free = 18217, Total = 19008, Max = 19008 (00:00.008 / 01:53.428, 793Mb) Reclaiming memory... (00:00.000 / 01:53.428, 793Mb) ## Memory (MB): Use = 310, Free = 18697, Total = 19008, Max = 19008 (00:00.313 / 01:53.742, 321Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 01:53.744, 321Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 01:53.744, 321Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:53.744, 321Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:53.744, 321Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.528 / 01:54.273, 332Mb) Jekyll: Generating... (00:00.000 / 01:54.273, 332Mb) Jekyll: done in 0.227 seconds. (00:00.226 / 01:54.499, 332Mb) Checking Output HTML (00:00.988 / 01:55.488, 414Mb) found 608 files (00:00.005 / 01:55.493, 414Mb) ........................................ ........................................ ... 608 html files, 1 page invalid xhtml (0%) (00:00.696 / 01:56.189, 790Mb) ... 1647 links, 0 broken link (0%) (00:00.000 / 01:56.189, 790Mb) Publishing Content Failed: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations (00:00.004 / 01:56.194, 790Mb) (00:00.000 / 01:56.194, 790Mb) Use -? to get command line help (00:00.000 / 01:56.194, 790Mb) (00:00.000 / 01:56.194, 790Mb) Stack Dump (for debugging): (00:00.000 / 01:56.194, 790Mb) org.hl7.fhir.exceptions.FHIRException: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:9128) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1199) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1029) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:15805)