INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/alpivonka/Credentialing-PrimarySource-FHIR-IG --branch master repo DEBUG:root:Time to deadline 35879.998321 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.578287 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.509165 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/alpivonka/Credentialing-PrimarySource-FHIR-IG/ -out /scratch/repo DEBUG:root:Time to deadline 35870.911525 seconds FHIR IG Publisher Version 2.0.25 (Git# d48a81e8a0ba). Built 2025-10-30T11:15:41.7Z (4 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/alpivonka/Credentialing-PrimarySource-FHIR-IG/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Monday, November 3, 2025, 4:30:10 PM Coordinated Universal Time (2025-11-03T16:30:10Z) Build FHIR IG from /scratch/repo (00:00.023 / 00:00.023, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.025, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.028, 97Mb) Run Sushi on /scratch/repo (00:00.004 / 00:00.033, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.548 / 00:00.581, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.581, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.582, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.582, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.582, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.598 / 00:01.181, 113Mb) Sushi: warn Configuration property pages/index.md has a value with an unexpected type. (00:00.121 / 00:01.303, 113Mb) Sushi: info Importing FSH text... (00:00.000 / 00:01.304, 113Mb) Sushi: info Preprocessed 15 documents with 34 aliases. (00:00.274 / 00:01.578, 113Mb) Sushi: info Imported 39 definitions and 62 instances. (00:00.029 / 00:01.608, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.097 / 00:01.706, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.608 / 00:02.314, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:02.315, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.825 / 00:03.140, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:03.143, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.058 / 00:03.201, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.459 / 00:03.661, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:03.662, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.695 / 00:06.357, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:06.359, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.298 / 00:07.657, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.474 / 00:08.131, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:08.132, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.548 / 00:09.680, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:09.681, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.239 / 00:09.921, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:09.922, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.999 / 00:12.921, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.002 / 00:12.923, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.185 / 00:14.109, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.011 / 00:14.121, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.121, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.121, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.001 / 00:14.123, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.123, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:14.123, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.015 / 00:14.138, 113Mb) Sushi: warn The name "qualification-restriction" may not be suitable for machine processing applications such as code generation. Valid names start with an upper-case ASCII letter ('A'..'Z') followed by any combination of upper- or lower-case ASCII letters ('A'..'Z', and 'a'..'z'), numerals ('0'..'9') and '_', with a length limit of 255 characters. (00:00.680 / 00:14.819, 113Mb) Sushi: File: /scratch/repo/input/fsh/extensions/extensionsPSVPractitioner.fsh (00:00.000 / 00:14.820, 113Mb) Sushi: Line: 39 - 42 (00:00.000 / 00:14.820, 113Mb) Sushi: info Converted 23 FHIR StructureDefinitions. (00:00.048 / 00:14.869, 113Mb) Sushi: info Converted 8 FHIR CodeSystems. (00:00.115 / 00:14.984, 113Mb) Sushi: info Converted 8 FHIR ValueSets. (00:00.088 / 00:15.073, 113Mb) Sushi: warn Cannot find the entity referenced at org-state-medical-board. The provided reference value will be used, but this reference does not conform to the FHIR Reference format. (00:02.253 / 00:17.326, 113Mb) Sushi: File: /scratch/repo/input/fsh/examples/state_licence_example.fsh (00:00.000 / 00:17.326, 113Mb) Sushi: Line: 115 (00:00.000 / 00:17.326, 113Mb) Sushi: info Converted 62 FHIR instances. (00:01.074 / 00:18.401, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:18.402, 113Mb) Sushi: info Exported 101 FHIR resources as JSON. (00:00.057 / 00:18.460, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.003 / 00:18.463, 113Mb) Sushi: info Generated ImplementationGuide-credentialing-primaysource.json (00:00.007 / 00:18.471, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:18.471, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:18.473, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.473, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:18.473, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:18.473, 113Mb) Sushi: | | 15 | 8 | 0 | 0 | | (00:00.000 / 00:18.474, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.474, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.474, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:18.474, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:18.475, 113Mb) Sushi: | | 8 | 8 | 62 | | (00:00.000 / 00:18.475, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.475, 113Mb) Sushi: | | (00:00.000 / 00:18.475, 113Mb) Sushi: =================================================================== (00:00.000 / 00:18.475, 113Mb) Sushi: | Don't be koi about asking for help. 0 Errors 3 Warnings | (00:00.000 / 00:18.475, 113Mb) Sushi: =================================================================== (00:00.000 / 00:18.475, 113Mb) Root directory: /scratch/repo (00:00.028 / 00:18.504, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.522 / 00:19.026, 37Mb) Load Template from openhie.fhir.template#current (00:00.518 / 00:19.545, 94Mb) Installing openhie.fhir.template#current to the package cache  Fetching:  Installing openhie.fhir.template#current  done.  Load Template from fhir.base.template#1.0.0 (00:01.299 / 00:20.844, 160Mb) Installing fhir.base.template#1.0.0 to the package cache  Fetching:  Installing fhir.base.template#1.0.0  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.762 / 00:25.606, 217Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.004 / 00:25.611, 217Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-2396426067076734830.html Connect to Terminology Server at http://tx.fhir.org (00:28.630 / 00:54.241, 701Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:08.359 / 01:02.601, 423Mb) Load IG (00:00.000 / 01:02.601, 423Mb) Load Content (00:00.004 / 01:02.605, 425Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.083 / 01:02.689, 433Mb) Process Loaded Resources (00:00.883 / 01:03.572, 503Mb) Generating Snapshots (00:00.190 / 01:03.763, 535Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://example.com/fhir/psv/package-list.json for version check (00:01.014 / 01:04.778, 879Mb) Checking Language (00:00.257 / 01:05.035, 879Mb) Load Dependency Info (00:00.003 / 01:05.039, 887Mb) Load Info (00:00.001 / 01:05.040, 887Mb) Load Paths (00:00.000 / 01:05.041, 891Mb) Check R4 / R4B (00:00.000 / 01:05.041, 891Mb) Assign Comparison Ids (00:00.028 / 01:05.070, 891Mb) Propagating status (00:00.000 / 01:05.070, 891Mb) Generating Narratives (00:00.000 / 01:05.070, 891Mb) Validating Conformance Resources (00:06.958 / 01:12.029, 670Mb) Check profiles & code systems (00:07.867 / 01:19.896, 782Mb) Check realm rules (00:00.003 / 01:19.900, 782Mb) Previous Version Comparison (00:00.000 / 01:19.900, 782Mb) Checking for Bundles to sign (00:00.020 / 01:19.920, 782Mb) Validating Resources (00:00.000 / 01:19.921, 782Mb) Processing Provenance Records (00:01.867 / 01:21.789, 878Mb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:21.789, 878Mb) Generate Native Outputs (00:00.297 / 01:22.087, 894Mb) Run Template (00:03.398 / 01:25.485, 584Mb) Generate HTML Outputs (00:02.214 / 01:27.700, 711Mb) Unable to convert resource VerificationResult/vr-license-suspension for rendering: Unknown Status code 'completed' (00:09.087 / 01:36.788, 2Gb) This resource contains other resources that won't be rendered correctly, and Jekyll may fail (00:00.000 / 01:36.788, 2Gb) Generate Spreadsheets (00:00.137 / 01:36.925, 2Gb) Generate Summaries (00:04.142 / 01:41.068, 1Gb) Generating Summary Outputs (00:00.000 / 01:41.068, 1Gb) DB Cumulative Time invested: 00:00:01.144 Sending Usage Stats to Server (00:06.332 / 01:47.401, 2Gb) ## Memory (MB): Use = 2450, Free = 16557, Total = 19008, Max = 19008 (00:00.006 / 01:47.408, 2Gb) Reclaiming memory... (00:00.000 / 01:47.408, 2Gb) ## Memory (MB): Use = 526, Free = 18481, Total = 19008, Max = 19008 (00:00.554 / 01:47.962, 534Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.003 / 01:47.966, 543Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 01:47.966, 543Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:47.966, 543Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:47.966, 543Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.432 / 01:48.399, 558Mb) Jekyll: Generating... (00:00.000 / 01:48.399, 558Mb) Jekyll: done in 2.322 seconds. (00:02.321 / 01:50.721, 561Mb) Checking Output HTML (00:01.698 / 01:52.419, 1Gb) Processed /scratch/repo/output - % reduction = 100 (40974152 ==> 306986) found 1698 files (00:01.015 / 01:53.435, 2Gb) ........................................ ........................................ ... 1698 html files, 1 page invalid xhtml (0%) (00:16.787 / 02:10.222, 4Gb) ... 181106 links, 608 broken link (0%) (00:00.000 / 02:10.222, 4Gb) Publishing Content Failed: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations (00:00.021 / 02:10.244, 4Gb) (00:00.000 / 02:10.244, 4Gb) Use -? to get command line help (00:00.000 / 02:10.244, 4Gb) (00:00.000 / 02:10.244, 4Gb) Stack Dump (for debugging): (00:00.000 / 02:10.244, 4Gb) org.hl7.fhir.exceptions.FHIRException: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: glyphicons-halflings-regular_f49c0c87d80ed5a717b0f1654f69fd3b.svg). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:506) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:428) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:232) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1575)