ValueSet Comparison between http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-laboratory-observation-complete vs http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-laboratory-observation-complete

Messages

Metadata

Name	Value		Comments
compose.inactive
compose.lockedDate
copyright	CC0-1.0
date	2026-08-14T07:28:03+00:00	2026-10-30T14:02:35+00:00	Values Differ
description	This CH ELM value set includes the codes for every type of laboratory test results (organism detection, genotyping, susceptibility).
experimental	false
immutable
jurisdiction
jurisdiction / jurisdiction[0]	urn:iso:std:iso:3166#CH
name	ChElmResultsLaboratoryObservationComplete
publisher	Federal Office of Public Health FOPH
purpose
status	active
title	CH ELM Results Laboratory Observation Complete
url	http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-laboratory-observation-complete
version	1.15.1	1.16.0	Values Differ

Definition

Item	Property		Value		Comments
include	http://loinc.org
include / Concept	100383-9		Monkeypox virus DNA [Presence] in Specimen by NAA with probe detection
include / Concept	100749-1		Legionella pneumophila serogroup 1 [Presence] in Specimen by NAA with probe detection
include / Concept	100888-7		Monkeypox virus clade II DNA [Presence] in Specimen by NAA with probe detection
include / Concept	100889-5		Monkeypox virus clade I DNA [Presence] in Specimen by NAA with probe detection
include / Concept	100911-7		Campylobacter sp [Presence] in Stool by Organism specific culture
include / Concept	100965-3		Dengue virus IgG Ab [Interpretation] in Serum, Plasma or Blood
include / Concept	101003-2		Monkeypox virus clade [Type] in Specimen by Sequencing
include / Concept	101219-4		Legionella sp DNA [Presence] in Specimen by NAA with probe detection
include / Concept	101298-8		Respiratory syncytial virus RNA [Presence] in Throat by NAA with non-probe detection
include / Concept	101307-7		Plasmodium vivax+ovale DNA [Presence] in Blood by NAA with non-probe detection
include / Concept	101364-8		Francisella tularensis DNA [Presence] in Blood by NAA with non-probe detection
include / Concept	101373-9		Francisella tularensis DNA [Presence] in Sputum by NAA with non-probe detection
include / Concept	101423-2		Influenza virus A H1 RNA [Presence] in Respiratory system specimen by NAA with probe detection
include / Concept	101424-0		Influenza virus A H3 RNA [Presence] in Respiratory system specimen by NAA with probe detection
include / Concept	101662-5		Abnormal Prion Protein [Presence] in Cerebral spinal fluid by RT-QuIC
include / Concept	101802-7		Brucella sp IgA Ab [Presence] in Serum
include / Concept	103168-1		Campylobacter coli+jejuni DNA [Presence] in Wound by NAA with probe detection
include / Concept	103717-5		Crimean-Congo hemorrhagic fever virus RNA [Presence] in Blood by NAA with non-probe detection
include / Concept	103719-1		Lassa virus RNA [Presence] in Blood by NAA with non-probe detection
include / Concept	104371-0		Corynebacterium pseudotuberculosis [Presence] in Specimen by Organism specific culture
include / Concept	104372-8		Corynebacterium pseudotuberculosis [Presence] in Upper respiratory specimen by Organism specific culture
include / Concept	104373-6		Corynebacterium ulcerans [Presence] in Specimen by Organism specific culture
include / Concept	104374-4		Corynebacterium ulcerans [Presence] in Upper respiratory specimen by Organism specific culture
include / Concept	104375-1		Corynebacterium ulcerans DNA [Presence] in Specimen by NAA with probe detection
include / Concept	104376-9		Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection
include / Concept	104395-9		European tick borne encephalitis virus IgG Ab [Titer] in Serum by Immunoassay --2nd specimen
include / Concept	104407-2		Hantavirus IgG Ab [Titer] in Serum by Immunoassay --2nd specimen
include / Concept	104454-4		Trichinella spiralis IgG Ab [Titer] in Serum by Immunoassay --2nd specimen
include / Concept	104476-7		Zika virus IgG Ab [Titer] in Serum by Immunoassay --2nd specimen
include / Concept	105065-7		Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Specimen
include / Concept	105211-7		Respiratory syncytial virus RNA [Presence] in Bronchial specimen by NAA with probe detection
include / Concept	105231-5		Respiratory syncytial virus RNA [Presence] in Sputum by NAA with probe detection
include / Concept	105640-7		Campylobacter sp DNA [Presence] in Specimen by NAA with probe detection
include / Concept	106554-9		Escherichia coli shiga-like toxin DNA [Presence] in Stool by NAA with probe detection
include / Concept	107242-0		Tick-borne encephalitis virus Ab [Interpretation] in Serum or Plasma	Tick borne encephalitis virus Ab [Interpretation] in Serum or Plasma
include / Concept	108111-6		Hantavirus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	111556-7		Respiratory syncytial virus RNA [Presence] in Bronchoalveolar aspirate by NAA with non-probe detection
include / Concept	11259-9		Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection
include / Concept	11469-4		Bacillus anthracis [Presence] in Specimen by Organism specific culture
include / Concept	11477-7		Microscopic observation [Identifier] in Sputum by Acid fast stain
include / Concept	11479-3		Microscopic observation [Identifier] in Tissue by Acid fast stain
include / Concept	11480-1		Microscopic observation [Identifier] in Urine by Acid fast stain
include / Concept	11545-1		Microscopic observation [Identifier] in Specimen by Acid fast stain
include / Concept	13954-3		Hepatitis B virus e Ag [Presence] in Serum or Plasma by Immunoassay
include / Concept	14127-5		Neisseria gonorrhoeae [Presence] in Anal by Organism specific culture
include / Concept	14357-8		Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain
include / Concept	14463-4		Chlamydia trachomatis [Presence] in Cervix by Organism specific culture
include / Concept	14464-2		Chlamydia trachomatis [Presence] in Vaginal fluid by Organism specific culture
include / Concept	14465-9		Chlamydia trachomatis [Presence] in Urethra by Organism specific culture
include / Concept	16134-9		Neisseria meningitidis [Presence] in Specimen by Organism specific culture
include / Concept	16600-9		Chlamydia trachomatis rRNA [Presence] in Genital specimen by Probe
include / Concept	16676-9		Corynebacterium diphtheriae [Presence] in Specimen by Organism specific culture
include / Concept	17552-1		Rubella virus IgM Ab [Presence] in Cerebral spinal fluid
include / Concept	17563-8		Salmonella sp identified in Specimen by Organism specific culture
include / Concept	17576-0		Shigella sp identified in Specimen by Organism specific culture
include / Concept	17735-2		Trichinella spiralis IgM Ab [Presence] in Serum
include / Concept	20458-6		Rubella virus IgG Ab [Interpretation] in Serum
include / Concept	20489-1		Streptococcus pneumoniae Ag [Presence] in Cerebral spinal fluid
include / Concept	21190-4		Chlamydia trachomatis DNA [Presence] in Cervix by NAA with probe detection
include / Concept	21191-2		Chlamydia trachomatis DNA [Presence] in Urethra by NAA with probe detection
include / Concept	21262-1		Escherichia coli shiga-like toxin [Presence] in Stool by Immunoassay
include / Concept	21363-7		Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection
include / Concept	21415-5		Neisseria gonorrhoeae DNA [Presence] in Urethra by NAA with probe detection
include / Concept	21416-3		Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
include / Concept	21503-8		Measles virus IgM Ab [Presence] in Serum
include / Concept	21613-5		Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection
include / Concept	22314-9		Hepatitis A virus IgM Ab [Presence] in Serum
include / Concept	22502-9		Measles virus IgG Ab [Titer] in Serum
include / Concept	22826-2		Influenza virus A identified in Specimen by Bioassay
include / Concept	22866-8		Bacillus anthracis Ag [Presence] in Tissue by Immunofluorescence
include / Concept	22867-6		Bacillus anthracis Ag [Presence] in Specimen by Immunofluorescence
include / Concept	23024-3		Coxiella burnetii DNA [Presence] in Specimen by NAA with probe detection
include / Concept	23126-6		Francisella tularensis Ag [Presence] in Tissue by Immune stain
include / Concept	23130-8		Francisella tularensis DNA [Presence] in Tissue by NAA with probe detection
include / Concept	23499-7		Trichinella spiralis [Presence] in Tissue by Light microscopy
include / Concept	23838-6		Chlamydia trachomatis rRNA [Presence] in Genital fluid by Probe
include / Concept	24002-8		Microscopic observation [Identifier] in Bronchial specimen by Acid fast stain
include / Concept	24102-6		Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)
include / Concept	24111-7		Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection
include / Concept	24113-3		Hepatitis B virus core IgM Ab [Presence] in Serum or Plasma by Immunoassay
include / Concept	24116-6		Rubella virus IgM Ab [Presence] in Serum or Plasma by Immunoassay
include / Concept	24396-4		Brucella sp IgG Ab [Presence] in Serum
include / Concept	24397-2		Brucella sp IgM Ab [Presence] in Serum
include / Concept	25338-5		Dengue virus IgM Ab [Presence] in Serum
include / Concept	26620-5		Hantavirus IgG Ab [Presence] in Serum
include / Concept	29566-7		West Nile virus IgG Ab [Presence] in Serum by Immunoassay
include / Concept	29610-3		Hepatitis B virus DNA [Presence] in Serum or Plasma by NAA with probe detection
include / Concept	29907-3		Haemophilus influenzae B DNA [Presence] in Specimen by NAA with probe detection
include / Concept	31204-1		Hepatitis B virus core IgM Ab [Presence] in Serum
include / Concept	31314-8		Coxiella burnetii phase 2 IgG Ab [Presence] in Serum
include / Concept	31315-5		Coxiella burnetii phase 2 IgM Ab [Presence] in Serum
include / Concept	31616-6		Rubella virus IgM Ab [Presence] in Serum
include / Concept	31703-2		West Nile virus IgM Ab [Presence] in Cerebral spinal fluid
include / Concept	31726-3		Bacillus anthracis Ag [Presence] in Specimen
include / Concept	31777-6		Chlamydia trachomatis Ag [Presence] in Specimen
include / Concept	31798-2		Dengue virus Ag [Presence] in Serum
include / Concept	31799-0		Dengue virus Ag [Presence] in Specimen
include / Concept	31828-7		Francisella tularensis Ag [Presence] in Serum
include / Concept	31829-5		Francisella tularensis Ag [Presence] in Specimen
include / Concept	31844-4		Hepatitis B virus e Ag [Presence] in Serum
include / Concept	31859-2		Influenza virus A Ag [Presence] in Specimen
include / Concept	31864-2		Influenza virus B Ag [Presence] in Specimen
include / Concept	31868-3		Legionella pneumophila 1 Ag [Presence] in Urine
include / Concept	31870-9		Legionella pneumophila Ag [Presence] in Urine
include / Concept	31879-0		Measles virus Ag [Presence] in Nose
include / Concept	31881-6		Measles virus Ag [Presence] in Serum or Plasma
include / Concept	31883-2		Measles virus Ag [Presence] in Sputum
include / Concept	31884-0		Measles virus Ag [Presence] in Throat
include / Concept	31887-3		Measles virus Ag [Presence] in Specimen
include / Concept	31912-9		Neisseria meningitidis Ag [Presence] in Specimen
include / Concept	31969-9		Streptococcus pneumoniae Ag [Presence] in Specimen
include / Concept	31989-7		14-3-3 Ag [Presence] in Cerebral spinal fluid
include / Concept	32131-5		Hantavirus IgM Ab [Presence] in Serum
include / Concept	32188-5		Microscopic observation [Identifier] in Cerebral spinal fluid by Acid fast stain
include / Concept	32705-6		Neisseria gonorrhoeae DNA [Presence] in Vaginal fluid by NAA with probe detection
include / Concept	32781-7		Legionella sp Ag [Presence] in Urine
include / Concept	33676-8		Francisella tularensis [Presence] in Specimen by Organism specific culture
include / Concept	33679-2		Francisella tularensis DNA [Presence] in Specimen by NAA with probe detection
include / Concept	33685-9		Yersinia pestis [Presence] in Specimen by Organism specific culture
include / Concept	33687-5		Yersinia pestis Ag [Presence] in Specimen by Immunofluorescence
include / Concept	33691-7		Yersinia pestis DNA [Presence] in Specimen by NAA with probe detection
include / Concept	33696-6		Clostridium botulinum toxin [Presence] in Specimen by Mouse bioassay
include / Concept	34460-6		West Nile virus RNA [Presence] in Blood by NAA with probe detection
include / Concept	34461-4		West Nile virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection
include / Concept	34487-9		Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
include / Concept	38270-5		Influenza virus A H7 RNA [Presence] in Specimen by NAA with probe detection
include / Concept	38272-1		Influenza virus A H5 RNA [Presence] in Specimen by NAA with probe detection
include / Concept	38275-4		Transmissible spongiform encephalopathy [Presence] in Brain by Light microscopy
include / Concept	38353-9		Streptococcus sp identified in Specimen by Organism specific culture
include / Concept	38379-4		Mycobacterium tuberculosis complex DNA [Presence] in Specimen by NAA with probe detection
include / Concept	38382-8		Influenza virus B [Presence] in Specimen by Organism specific culture
include / Concept	39007-0		Hepatitis B virus e Ag [Presence] in Specimen
include / Concept	39025-2		Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing
include / Concept	40614-0		Brucella sp Ab [Presence] in Serum by Agglutination
include / Concept	40669-4		Rubella virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay
include / Concept	40982-1		Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
include / Concept	40988-8		Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	41216-3		Yellow fever virus IgM Ab [Presence] in Serum
include / Concept	41447-4		Plasmodium falciparum DNA [Presence] in Blood by NAA with probe detection
include / Concept	41448-2		Plasmodium malariae DNA [Presence] in Blood by NAA with probe detection
include / Concept	41449-0		Plasmodium ovale DNA [Presence] in Blood by NAA with probe detection
include / Concept	41450-8		Plasmodium vivax DNA [Presence] in Blood by NAA with probe detection
include / Concept	41458-1		SARS coronavirus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	41623-0		Bacillus anthracis DNA [Presence] in Specimen by NAA with probe detection
include / Concept	41625-5		Brucella sp DNA [Identifier] in Specimen by NAA with probe detection
include / Concept	41626-3		Brucella sp DNA [Presence] in Specimen by NAA with probe detection
include / Concept	41636-2		Ebola virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	41638-8		Marburg virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	41763-4		Rubella virus IgG Ab [Titer] in Serum
include / Concept	41856-6		Variola virus DNA [Presence] in Specimen by NAA with probe detection
include / Concept	42931-6		Chlamydia trachomatis rRNA [Presence] in Urine by NAA with probe detection
include / Concept	43304-5		Chlamydia trachomatis rRNA [Presence] in Specimen by NAA with probe detection
include / Concept	43305-2		Neisseria gonorrhoeae rRNA [Presence] in Specimen by NAA with probe detection
include / Concept	43389-6		Streptococcus sp identified in Isolate by Organism specific culture
include / Concept	44012-3		Measles virus IgG and IgM [Interpretation] in Serum
include / Concept	44797-9		Brucella sp [Presence] in Specimen by Organism specific culture
include / Concept	45084-1		Chlamydia trachomatis DNA [Presence] in Vaginal fluid by NAA with probe detection
include / Concept	45090-8		Chlamydia trachomatis DNA [Presence] in Anal by NAA with probe detection
include / Concept	45093-2		Chlamydia trachomatis [Presence] in Anal by Organism specific culture
include / Concept	45095-7		Chlamydia trachomatis [Presence] in Genital specimen by Organism specific culture
include / Concept	46454-5		Shigella sp [Presence] in Specimen by Organism specific culture
include / Concept	46732-4		Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection
include / Concept	47085-6		Plasmodium sp DNA [Presence] in Blood by NAA with probe detection
include / Concept	47387-6		Neisseria gonorrhoeae DNA [Presence] in Genital specimen by NAA with probe detection
include / Concept	48310-7		Influenza virus A [Presence] in Specimen by Organism specific culture
include / Concept	48508-6		Measles virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	49124-1		Coxiella burnetii identified in Specimen by Sequencing
include / Concept	49521-8		Influenza virus A H1 RNA [Presence] in Specimen by NAA with probe detection
include / Concept	49524-2		Influenza virus A H3 RNA [Presence] in Specimen by NAA with probe detection
include / Concept	49528-3		Influenza virus A H9 RNA [Presence] in Specimen by NAA with probe detection
include / Concept	49612-5		Salmonella sp DNA [Presence] in Specimen by NAA with probe detection
include / Concept	49671-1		Neisseria meningitidis DNA [Presence] in Specimen by NAA with probe detection
include / Concept	49672-9		Streptococcus pneumoniae DNA [Presence] in Specimen by NAA with probe detection
include / Concept	5007-0		Hepatitis B virus DNA [Presence] in Blood by NAA with probe detection
include / Concept	5009-6		Hepatitis B virus DNA [Presence] in Specimen by NAA with probe detection
include / Concept	5010-4		Hepatitis C virus RNA [Presence] in Blood by NAA with probe detection
include / Concept	5012-0		Hepatitis C virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	50387-0		Chlamydia trachomatis rRNA [Presence] in Cervix by NAA with probe detection
include / Concept	50388-8		Neisseria gonorrhoeae rRNA [Presence] in Cervix by NAA with probe detection
include / Concept	50687-3		Plasmodium sp Ag [Presence] in Blood
include / Concept	50697-2		Influenza virus A Ag [Identifier] in Isolate
include / Concept	51578-3		Chlamydia trachomatis DNA [Presence] in Semen by NAA with probe detection
include / Concept	51587-4		Plasmodium sp [Presence] in Blood by Light microscopy
include / Concept	51646-8		Rabies virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	51664-1		Chikungunya virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	51939-7		Escherichia coli shiga-like toxin 2 [Presence] in Stool by Immunoassay
include / Concept	51940-5		Escherichia coli shiga-like toxin 1 [Presence] in Stool by Immunoassay
include / Concept	5195-3		Hepatitis B virus surface Ag [Presence] in Serum
include / Concept	5196-1		Hepatitis B virus surface Ag [Presence] in Serum or Plasma by Immunoassay
include / Concept	5199-5		Hepatitis C virus Ab [Presence] in Serum by Immunoblot
include / Concept	52986-7		Rubella virus IgG Ab avidity [Ratio] in Serum by Immunoassay
include / Concept	534-8		Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture
include / Concept	53607-8		Haemophilus influenzae B DNA [Presence] in Blood by NAA with probe detection
include / Concept	53879-3		Neisseria gonorrhoeae rRNA [Presence] in Vaginal fluid by NAA with probe detection
include / Concept	539-7		Mycobacterium sp identified in Sputum by Organism specific culture
include / Concept	53917-1		Streptococcus pneumoniae DNA [Presence] in Blood by NAA with probe detection
include / Concept	53925-4		Chlamydia trachomatis rRNA [Presence] in Urethra by NAA with probe detection
include / Concept	53926-2		Chlamydia trachomatis rRNA [Presence] in Vaginal fluid by NAA with probe detection
include / Concept	53927-0		Neisseria gonorrhoeae rRNA [Presence] in Urethra by NAA with probe detection
include / Concept	53941-1		Vibrio cholerae toxin Ag [Presence] in Isolate
include / Concept	53942-9		Vibrio cholerae toxin ctx gene [Presence] in Specimen by NAA with probe detection
include / Concept	53946-0		Escherichia coli shiga-like toxin identified in Specimen
include / Concept	540-5		Mycobacterium sp identified in Tissue by Organism specific culture
include / Concept	54091-4		Rubella virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	541-3		Mycobacterium sp identified in Urine by Organism specific culture
include / Concept	543-9		Mycobacterium sp identified in Specimen by Organism specific culture
include / Concept	552-0		Brucella sp identified in Specimen by Organism specific culture
include / Concept	55465-9		Influenza virus A H1 2009 pandemic RNA [Presence] in Specimen by NAA with probe detection
include / Concept	56129-0		Chikungunya virus IgG Ab [Presence] in Serum or Plasma by Immunofluorescence
include / Concept	56131-6		Chikungunya virus IgM Ab [Presence] in Serum or Plasma by Immunofluorescence
include / Concept	56475-7		Salmonella sp antigenic formula [Identifier] in Isolate by Agglutination
include / Concept	57287-5		Chlamydia trachomatis rRNA [Presence] in Anal by NAA with probe detection
include / Concept	57458-2		Neisseria gonorrhoeae rRNA [Presence] in Anal by NAA with probe detection
include / Concept	57934-2		Chikungunya virus IgM Ab [Presence] in Serum or Plasma
include / Concept	58473-0		Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection
include / Concept	589-2		Legionella sp identified in Bronchial specimen by Organism specific culture
include / Concept	590-0		Legionella sp identified in Sputum by Organism specific culture
include / Concept	593-4		Legionella sp identified in Specimen by Organism specific culture
include / Concept	59423-4		Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection
include / Concept	60255-7		Neisseria gonorrhoeae rRNA [Presence] in Throat by NAA with probe detection
include / Concept	60256-5		Neisseria gonorrhoeae rRNA [Presence] in Urine by NAA with probe detection
include / Concept	60261-5		Coxiella burnetii DNA [Presence] in Serum or Plasma by NAA with probe detection
include / Concept	60274-8		Rubella virus RNA [Presence] in Serum or Plasma by NAA with probe detection
include / Concept	60422-3		Measles virus genotype [Identifier] in Specimen by NAA with probe detection
include / Concept	60534-5		SARS coronavirus RNA [Presence] in Serum or Plasma by NAA with probe detection
include / Concept	60546-9		Polio virus identified [Type] in Isolate by Organism specific culture
include / Concept	61366-1		Haemophilus influenzae DNA [Presence] in Specimen by NAA with probe detection
include / Concept	61369-5		Listeria monocytogenes DNA [Presence] in Specimen by NAA with probe detection
include / Concept	61371-1		Vibrio cholerae DNA [Presence] in Specimen by NAA with probe detection
include / Concept	62469-2		Version: HIV 1 RNA [Units/volume] (viral load) in Serum or Plasma by NAA with probe detection		Removed this Concept
include / Concept	6349-5		Chlamydia trachomatis [Presence] in Specimen by Organism specific culture
include / Concept	6356-0		Chlamydia trachomatis DNA [Presence] in Genital specimen by NAA with probe detection
include / Concept	6357-8		Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
include / Concept	6387-5		Dengue virus DNA [Presence] in Specimen by Probe
include / Concept	6508-6		Neisseria meningitidis Ag [Presence] in Cerebral spinal fluid
include / Concept	6532-6		Rabies virus Ag [Presence] in Specimen by Immunofluorescence
include / Concept	6539-1		Rabies virus identified in Specimen by Organism specific culture
include / Concept	6548-2		Rubella virus identified in Serum by Organism specific culture
include / Concept	65756-9		Salmonella sp serovar [Type] in Isolate
include / Concept	6578-9		Vibrio sp identified in Blood by Organism specific culture
include / Concept	6579-7		Vibrio sp identified in Stool by Organism specific culture
include / Concept	6581-3		Vibrio sp identified in Specimen by Organism specific culture
include / Concept	6584-7		Virus identified in Specimen by Culture
include / Concept	6600-1		Haemophilus sp identified in Specimen by Organism specific culture
include / Concept	6604-3		Influenza virus identified in Specimen by Organism specific culture
include / Concept	6609-2		Listeria sp identified in Specimen by Organism specific culture
include / Concept	67561-1		Corynebacterium diphtheriae DNA [Presence] in Specimen by NAA with probe detection
include / Concept	6811-4		Dengue virus IgG Ab [Titer] in Serum
include / Concept	688-2		Neisseria gonorrhoeae [Presence] in Cervix by Organism specific culture
include / Concept	691-6		Neisseria gonorrhoeae [Presence] in Genital specimen by Organism specific culture
include / Concept	693-2		Neisseria gonorrhoeae [Presence] in Vaginal fluid by Organism specific culture
include / Concept	694-0		Neisseria gonorrhoeae [Presence] in Semen by Organism specific culture
include / Concept	69410-9		Haemophilus influenzae [Identifier] in Specimen by Organism specific culture
include / Concept	69577-5		Hepatitis E virus RNA [Presence] in Blood by NAA with probe detection
include / Concept	696-5		Neisseria gonorrhoeae [Presence] in Throat by Organism specific culture
include / Concept	697-3		Neisseria gonorrhoeae [Presence] in Urethra by Organism specific culture
include / Concept	69765-6		Rubella virus IgM Ab [Presence] in Body fluid by Immunoassay
include / Concept	698-1		Neisseria gonorrhoeae [Presence] in Specimen by Organism specific culture
include / Concept	70242-3		Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection
include / Concept	70568-1		Plasmodium knowlesi DNA [Presence] in Blood by NAA with probe detection
include / Concept	70569-9		Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay
include / Concept	70858-6		Rabies virus neutralizing antibody [Presence] in Serum by Neutralization test
include / Concept	71782-7		Yellow fever virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay
include / Concept	72307-2		Brucella sp IgG Ab [Titer] in Serum --2nd specimen
include / Concept	73907-8		Polio virus identified in Specimen by Organism specific culture
include / Concept	74037-3		Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy
include / Concept	74785-7		Influenza virus B Victoria lineage RNA [Presence] in Specimen by NAA with probe detection
include / Concept	74786-5		Influenza virus B Yamagata lineage RNA [Presence] in Specimen by NAA with probe detection
include / Concept	75756-7		Bacteria identified in Isolate by MS.MALDI-TOF
include / Concept	76078-5		Influenza virus A RNA [Presence] in Nasopharynx by NAA with probe detection
include / Concept	76080-1		Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection
include / Concept	76088-4		Respiratory syncytial virus RNA [Presence] in Bronchoalveolar lavage by NAA with probe detection
include / Concept	76089-2		Respiratory syncytial virus RNA [Presence] in Nasopharynx by NAA with probe detection
include / Concept	76626-1		Measles virus [Presence] in Specimen by Organism specific culture
include / Concept	76772-3		Plasmodium falciparum Ag [Presence] in Blood by Rapid immunoassay
include / Concept	77026-3		Influenza virus A H1 RNA [Presence] in Nasopharynx by NAA with probe detection
include / Concept	77027-1		Influenza virus A H3 RNA [Presence] in Nasopharynx by NAA with probe detection
include / Concept	77028-9		Influenza virus A H1 2009 pandemic RNA [Presence] in Nasopharynx by NAA with probe detection
include / Concept	77685-6		HIV 1 and 2 IgG Ab [Identifier] in Serum or Plasma by Immunoblot
include / Concept	77955-3		Yellow fever virus IgM Ab [Presence] in Serum by Immunofluorescence
include / Concept	7889-9		Francisella tularensis IgG Ab [Presence] in Serum
include / Concept	7890-7		Francisella tularensis IgM Ab [Presence] in Serum
include / Concept	7899-8		Hantavirus RNA [Presence] in Serum by NAA with probe detection
include / Concept	7904-6		Hepatitis A virus RNA [Presence] in Serum by NAA with probe detection
include / Concept	79189-7		Hepatitis C virus core Ag [Presence] in Serum or Plasma by Immunoassay
include / Concept	79190-5		Zika virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	79386-9		Escherichia coli Stx1 toxin stx1 gene [Presence] in Stool by NAA with probe detection
include / Concept	79387-7		Escherichia coli Stx2 toxin stx2 gene [Presence] in Stool by NAA with probe detection
include / Concept	7964-0		Measles virus RNA [Presence] in Nose by NAA with probe detection
include / Concept	80363-5		Chlamydia trachomatis DNA [Presence] in Anorectal by NAA with probe detection
include / Concept	80364-3		Chlamydia trachomatis rRNA [Presence] in Anorectal by NAA with probe detection
include / Concept	80366-8		Neisseria gonorrhoeae rRNA [Presence] in Anorectal by NAA with probe detection
include / Concept	80367-6		Chlamydia trachomatis [Presence] in Anorectal by Organism specific culture
include / Concept	80368-4		Neisseria gonorrhoeae [Presence] in Anorectal by Organism specific culture
include / Concept	8043-2		Trichinella spiralis IgG Ab [Presence] in Serum
include / Concept	80680-2		Vibrio cholerae toxin ctxA gene [Presence] in Stool by NAA with probe detection
include / Concept	80824-6		Zika virus IgM Ab [Presence] in Serum or Plasma by Immunoassay
include / Concept	81656-1		Campylobacter coli+jejuni tuf gene [Presence] in Stool by NAA with probe detection
include / Concept	81868-2		PRNP gene targeted mutation analysis in Blood or Tissue by Molecular genetics method
include / Concept	82184-3		Listeria monocytogenes DNA [Presence] in Cerebral spinal fluid by NAA with non-probe detection
include / Concept	82300-5		Shigella sp [Presence] in Stool by Culture
include / Concept	82301-3		Salmonella sp [Presence] in Stool by Culture
include / Concept	82731-1		Zika virus IgM Ab [Presence] in Serum by Immunofluorescence
include / Concept	85362-2		Version: Mycobacterium tuberculosis complex DNA [Presence] in Sputum or Bronchial by NAA with probe detection		Removed this Concept
include / Concept	85477-8		Influenza virus A RNA [Presence] in Upper respiratory specimen by NAA with probe detection
include / Concept	85478-6		Influenza virus B RNA [Presence] in Upper respiratory specimen by NAA with probe detection
include / Concept	85479-4		Respiratory syncytial virus RNA [Presence] in Upper respiratory specimen by NAA with probe detection
include / Concept	85622-9		Zika virus RNA [Presence] in Serum or Plasma by NAA with probe detection
include / Concept	85623-7		Zika virus RNA [Presence] in Urine by NAA with probe detection
include / Concept	86515-4		Chikungunya virus RNA [Presence] in Urine by NAA with probe detection
include / Concept	86518-8		Ebola virus RNA [Presence] in Blood by NAA with probe detection
include / Concept	86520-4		Hantavirus RNA [Presence] in Blood by NAA with probe detection
include / Concept	86574-1		Marburg virus RNA [Presence] in Blood by NAA with probe detection
include / Concept	86576-6		Measles virus RNA [Presence] in Serum by NAA with probe detection
include / Concept	86581-6		Neisseria meningitidis [Presence] in Cerebral spinal fluid by Organism specific culture
include / Concept	86589-9		Rubella virus RNA [Presence] in Urine by NAA with probe detection
include / Concept	87622-7		Zika virus IgM Ab [Presence] in Specimen by Immunoassay
include / Concept	87985-8		Trichinella spiralis DNA [Presence] in Tissue by NAA with probe detection
include / Concept	88177-1		Coxiella burnetii DNA [Presence] in Blood by NAA with probe detection
include / Concept	88178-9		Coxiella burnetii DNA [Presence] in Tissue by NAA with probe detection
include / Concept	88192-0		Crimean-Congo hemorrhagic fever virus RNA [Presence] in Serum by NAA with probe detection
include / Concept	88199-5		Middle East respiratory syndrome coronavirus (MERS-CoV) RNA [Presence] in Aspirate by NAA with probe detection
include / Concept	88224-1		Neisseria gonorrhoeae DNA [Presence] in Anorectal by NAA with probe detection
include / Concept	88225-8		Neisseria gonorrhoeae DNA [Presence] in Throat by NAA with probe detection
include / Concept	88584-8		Corynebacterium diphtheriae [Presence] in Upper respiratory specimen by Organism specific culture
include / Concept	88585-5		Legionella sp identified in Lower respiratory specimen by Organism specific culture
include / Concept	88588-9		Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection
include / Concept	88590-5		Legionella pneumophila DNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	88592-1		Influenza virus B RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	88599-6		Influenza virus A RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	88629-1		Chikungunya virus IgM Ab [Presence] in Serum or Plasma by Immunoassay
include / Concept	88875-0		Measles virus genotype A vaccine strain N gene [Presence] in Specimen by NAA with probe detection
include / Concept	89596-1		Listeria monocytogenes DNA [Presence] in Blood by NAA with probe detection
include / Concept	90066-2		Corynebacterium sp identified in Isolate by Organism specific culture
include / Concept	90459-9		Yellow fever virus RNA [Presence] in Blood by NAA with probe detection
include / Concept	91071-1		Hepatitis E virus RNA [Presence] in Stool by NAA with probe detection
include / Concept	91077-8		Measles virus RNA [Presence] in Upper respiratory specimen by NAA with probe detection
include / Concept	91078-6		Zika virus RNA [Presence] in Blood by NAA with probe detection
include / Concept	91132-1		Measles virus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	91133-9		Respiratory syncytial virus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	91780-7		Measles virus [Presence] in Lower respiratory specimen by Organism specific culture
include / Concept	91786-4		Measles virus [Presence] in Upper respiratory specimen by Organism specific culture
include / Concept	91792-2		Rubella virus RNA [Presence] in Upper respiratory specimen by NAA with probe detection
include / Concept	91807-8		Middle East respiratory syndrome coronavirus (MERS-CoV) RNA [Presence] in Upper respiratory specimen by NAA with probe detection
include / Concept	91823-5		Rubella virus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	91830-0		Middle East respiratory syndrome coronavirus (MERS-CoV) RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	92131-2		Respiratory syncytial virus RNA [Presence] in Respiratory system specimen by NAA with probe detection
include / Concept	92141-1		Influenza virus B RNA [Presence] in Respiratory system specimen by NAA with probe detection
include / Concept	92142-9		Influenza virus A RNA [Presence] in Respiratory system specimen by NAA with probe detection
include / Concept	92145-2		Legionella pneumophila DNA [Presence] in Respiratory system specimen by NAA with probe detection
include / Concept	92771-5		Streptococcus pneumoniae DNA [Presence] by NAA with probe detection in Positive blood culture
include / Concept	92786-3		Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture
include / Concept	92808-5		Influenza virus A H3 RNA [Presence] in Upper respiratory specimen by NAA with probe detection
include / Concept	92809-3		Influenza virus A H1 RNA [Presence] in Upper respiratory specimen by NAA with probe detection
include / Concept	93385-3		Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture
include / Concept	93388-7		Neisseria meningitidis DNA [Presence] by NAA with probe detection in Positive blood culture
include / Concept	93397-8		Haemophilus influenzae DNA [Presence] by NAA with probe detection in Positive blood culture
include / Concept	93716-9		Francisella tularensis IgM Ab [Presence] in Serum by Immunoassay
include / Concept	93717-7		Francisella tularensis IgG Ab [Presence] in Serum by Immunoassay
include / Concept	93718-5		Francisella tularensis IgG and IgM [Interpretation] in Serum
include / Concept	93979-3		Chikungunya virus IgG Ab [Presence] in Serum or Plasma
include / Concept	94184-9		Yellow fever virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	94289-6		West Nile virus neutralizing antibody [Presence] in Specimen by Neutralization test
include / Concept	94309-2		SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection
include / Concept	94394-4		Influenza virus A H3 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	94395-1		Influenza virus A H1 2009 pandemic RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	94396-9		Influenza virus A H1 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
include / Concept	94500-6		SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
include / Concept	94501-4		Middle East respiratory syndrome coronavirus (MERS-CoV) RNA [Presence] in Respiratory system specimen by NAA with probe detection
include / Concept	94759-8		SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection
include / Concept	94845-5		SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by NAA with probe detection
include / Concept	95156-6		Hepatitis E virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	95406-5		SARS-CoV-2 (COVID-19) RNA [Presence] in Nose by NAA with probe detection
include / Concept	95687-0		Chikungunya virus IgM Ab [Presence] in Specimen by Immunoassay
include / Concept	95690-4		Yellow fever virus IgM Ab [Presence] in Specimen by Immunoassay
include / Concept	96509-5		Tick-borne encephalitis virus IgG Ab [Presence] in Specimen by Immunoassay
include / Concept	96535-0		Tick-borne encephalitis virus IgM Ab [Presence] in Specimen by Immunoassay
include / Concept	96599-6		Neisseria gonorrhoeae DNA [Presence] in Cervix by NAA with probe detection
include / Concept	96797-6		SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection
include / Concept	9709-7		Coxiella burnetii phase 2 IgG Ab [Titer] in Serum
include / Concept	9711-3		Coxiella burnetii phase 2 IgM Ab [Titer] in Serum
include / Concept	97313-1		Salmonella sp DNA [Presence] in Stool by NAA with probe detection
include / Concept	97314-9		Vibrio cholerae DNA [Presence] in Stool by NAA with probe detection
include / Concept	97513-6		Campylobacter sp [Presence] in Specimen by Organism specific culture
include / Concept	97523-5		Hepatitis A virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	97621-7		Haemophilus influenzae DNA [Presence] in Synovial fluid by NAA with non-probe detection
include / Concept	97646-4		Lassa virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	97920-3		Tick-borne encephalitis virus RNA [Presence] in Specimen by NAA with probe detection
include / Concept	9823-6		Mycobacterium sp identified in Bronchial specimen by Organism specific culture
include / Concept	99090-3		Haemophilus influenzae DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
include / Concept	99092-9		Neisseria meningitidis DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
include / Concept	99094-5		Streptococcus pneumoniae DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
include / Concept	94053-6		Mycobacterium tuberculosis complex resistance panel by Molecular genetics method
include / Concept	29579-0		Mycobacterial susceptibility panel by Method for Slow-growing mycobacteria
include	http://snomed.info/sct
include / Concept	19030005		Human immunodeficiency virus (organism)
include / Concept	36115006		Human immunodeficiency virus type 2 (organism)
include / Concept	72904005		Treponema pallidum (organism)
include / Concept	734351004		Carbapenemase-producing Enterobacteriaceae (organism)
include / Concept	89293008		Human immunodeficiency virus type I (organism)
include / Concept	1087501000112108		Carbapenemase-producing Buttiauxella
include / Concept	1089101000112105		Carbapenemase-producing Citrobacter amalonaticus
include / Concept	1089301000112107		Carbapenemase-producing Citrobacter braakii
include / Concept	1089501000112101		Carbapenemase-producing Citrobacter
include / Concept	1089701000112106		Carbapenemase-producing Citrobacter farmeri
include / Concept	1089901000112108		Carbapenemase-producing Citrobacter freundii
include / Concept	1090201000112105		Carbapenemase-producing Citrobacter gillenii
include / Concept	1090401000112109		Carbapenemase-producing Citrobacter koseri
include / Concept	1090601000112107		Carbapenemase-producing Citrobacter murliniae
include / Concept	1091001000112109		Carbapenemase-producing Citrobacter sedlakii
include / Concept	1091201000112104		Carbapenemase-producing Citrobacter werkmanii
include / Concept	1091401000112100		Carbapenemase-producing Citrobacter youngae
include / Concept	1092401000112105		Carbapenemase-producing Cronobacter sakazakii
include / Concept	1093401000112101		Carbapenemase-producing Enterobacter
include / Concept	1093601000112103		Carbapenemase-producing Enterobacter asburiae
include / Concept	1094301000112105		Carbapenemase-producing Enterobacter hormaechei
include / Concept	1096801000112108		Carbapenemase-producing Klebsiella
include / Concept	1097701000112102		Carbapenemase-producing Klebsiella pneumoniae subsp. ozaenae
include / Concept	1098201000112108		Carbapenemase-producing Klebsiella pneumoniae
include / Concept	1099001000112108		Carbapenemase-producing Kluyvera
include / Concept	1099201000112103		Carbapenemase-producing Kluyvera ascorbata
include / Concept	1099401000112104		Carbapenemase-producing Kluyvera cryocrescens
include / Concept	1099601000112101		Carbapenemase-producing Kluyvera georgiana
include / Concept	1099801000112102		Carbapenemase-producing Kluyvera intermedia
include / Concept	1100001000112108		Carbapenemase-producing Leclercia
include / Concept	1100201000112103		Carbapenemase-producing Leclercia adecarboxylata
include / Concept	1105401000112106		Carbapenemase-producing Raoultella ornithinolytica
include / Concept	1105601000112109		Carbapenemase-producing Raoultella planticola
include / Concept	1105801000112108		Carbapenemase-producing Raoultella terrigena
include / Concept	1106001000112106		Carbapenemase-producing Salmonella
include / Concept	1108301000112108		Carbapenemase-producing Shigella
include / Concept	1112101000112106		Carbapenemase-producing Lelliottia amnigena
include / Concept	1359810002		Carbapenemase-producing Cronobacter
include / Concept	1359811003		Carbapenemase-producing Escherichia spp
include / Concept	1362138006		Carbapenemase-producing Lelliottia
include / Concept	1388125003		Carbapenemase-producing Pluralibacter (organism)
include / Concept	308241000087107		Carbapenemase-producing Pluralibacter gergoviae (organism)
include / Concept	33691000087101		Carbapenemase-producing Klebsiella variicola
include / Concept	432763001		Enterobacter ludwigii (organism)
include / Concept	44601000087107		Carbapenemase-producing Citrobacter freundii complex
include / Concept	51271000087100		Carbapenemase-producing Klebsiella oxytoca
include / Concept	734352006		Carbapenemase-producing Klebsiella aerogenes (organism)
include / Concept	734353001		Carbapenemase-producing Enterobacter cloacae complex (organism)
include / Concept	737528008		Carbapenemase-producing Escherichia coli (organism)
include / Concept	737529000		Carbapenemase-producing Enterobacter cloacae (organism)
include / Concept	770392005		Carbapenemase-producing Raoultella (organism)
include	urn:oid:2.16.756.5.30.1.129.1.5.1
include / Concept	EP-100100-7		FOPH emerging pathogen placeholder 1
include / Concept	EP-100200-5		FOPH emerging pathogen placeholder 2
include / Concept	EP-100300-3		FOPH emerging pathogen placeholder 3
include / Concept	EP-100400-1		FOPH emerging pathogen placeholder 4
include / Concept	EP-100500-8		FOPH emerging pathogen placeholder 5
include / Concept	EP-100600-6		FOPH emerging pathogen placeholder 6
include / Concept	EP-100700-4		FOPH emerging pathogen placeholder 7
include / Concept	EP-100800-2		FOPH emerging pathogen placeholder 8
include / Concept	EP-100900-0		FOPH emerging pathogen placeholder 9
include / Concept	EP-101000-8		FOPH emerging pathogen placeholder 10

Expansion

Unable to generate expansion - see errors