CH ELM (R4)
1.14.1 - release
CH ELM (R4)
1.14.1 - release
CH ELM (R4), published by Federal Office of Public Health FOPH. This guide is not an authorized publication; it is the continuous build for version 1.14.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/ahdis/ch-elm/ and changes regularly. See the Directory of published versions
| Active as of 2026-07-01 |
@prefix fhir: <http://hl7.org/fhir/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- <http://hl7.org/fhir/ValueSet/ch-elm-expecting-organism-specification> a fhir:ValueSet ; fhir:nodeRole fhir:treeRoot ; fhir:Resource.id [ fhir:value "ch-elm-expecting-organism-specification"] ; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ] ; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet ch-elm-expecting-organism-specification</b></p><a name=\"ch-elm-expecting-organism-specification\"> </a><a name=\"hcch-elm-expecting-organism-specification\"> </a><ul><li>Include these codes as defined in <a href=\"http://loinc.org\"><code>http://loinc.org</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b><a href=\"ValueSet-ch-elm-results-completion-vs.html\">CH ELM Expecting Organism Specification To Results Completion Vs</a></b></td></tr><tr><td><a href=\"https://loinc.org/100911-7/\">100911-7</a></td><td>Campylobacter sp [Presence] in Stool by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr><tr><td><a href=\"https://loinc.org/101003-2/\">101003-2</a></td><td>Monkeypox virus clade [Type] in Specimen by Sequencing</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mpox-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mpox-org</a></td></tr><tr><td><a href=\"https://loinc.org/101219-4/\">101219-4</a></td><td>Legionella sp DNA [Presence] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/104376-9/\">104376-9</a></td><td>Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href=\"https://loinc.org/14357-8/\">14357-8</a></td><td>Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-men-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org</a></td></tr><tr><td><a href=\"https://loinc.org/17563-8/\">17563-8</a></td><td>Salmonella sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/17576-0/\">17576-0</a></td><td>Shigella sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-nent-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-nent-org</a></td></tr><tr><td><a href=\"https://loinc.org/22826-2/\">22826-2</a></td><td>Influenza virus A identified in Specimen by Bioassay</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/24102-6/\">24102-6</a></td><td>Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href=\"https://loinc.org/32781-7/\">32781-7</a></td><td>Legionella sp Ag [Presence] in Urine</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/38353-9/\">38353-9</a></td><td>Streptococcus sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-pneu-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org</a></td></tr><tr><td><a href=\"https://loinc.org/39025-2/\">39025-2</a></td><td>Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/41625-5/\">41625-5</a></td><td>Brucella sp DNA [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-bru-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org</a></td></tr><tr><td><a href=\"https://loinc.org/43389-6/\">43389-6</a></td><td>Streptococcus sp identified in Isolate by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-pneu-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org</a></td></tr><tr><td><a href=\"https://loinc.org/46454-5/\">46454-5</a></td><td>Shigella sp [Presence] in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href=\"https://loinc.org/46732-4/\">46732-4</a></td><td>Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tul-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tul-org</a></td></tr><tr><td><a href=\"https://loinc.org/47085-6/\">47085-6</a></td><td>Plasmodium sp DNA [Presence] in Blood by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href=\"https://loinc.org/49612-5/\">49612-5</a></td><td>Salmonella sp DNA [Presence] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/50687-3/\">50687-3</a></td><td>Plasmodium sp Ag [Presence] in Blood</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href=\"https://loinc.org/50697-2/\">50697-2</a></td><td>Influenza virus A Ag [Identifier] in Isolate</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/51587-4/\">51587-4</a></td><td>Plasmodium sp [Presence] in Blood by Light microscopy</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href=\"https://loinc.org/534-8/\">534-8</a></td><td>Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tub-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org</a></td></tr><tr><td><a href=\"https://loinc.org/539-7/\">539-7</a></td><td>Mycobacterium sp identified in Sputum by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tub-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org</a></td></tr><tr><td><a href=\"https://loinc.org/540-5/\">540-5</a></td><td>Mycobacterium sp identified in Tissue by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tub-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org</a></td></tr><tr><td><a href=\"https://loinc.org/541-3/\">541-3</a></td><td>Mycobacterium sp identified in Urine by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tub-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org</a></td></tr><tr><td><a href=\"https://loinc.org/543-9/\">543-9</a></td><td>Mycobacterium sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tub-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org</a></td></tr><tr><td><a href=\"https://loinc.org/552-0/\">552-0</a></td><td>Brucella sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-bru-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org</a></td></tr><tr><td><a href=\"https://loinc.org/58473-0/\">58473-0</a></td><td>Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-haem-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org</a></td></tr><tr><td><a href=\"https://loinc.org/589-2/\">589-2</a></td><td>Legionella sp identified in Bronchial specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/590-0/\">590-0</a></td><td>Legionella sp identified in Sputum by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/593-4/\">593-4</a></td><td>Legionella sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/59423-4/\">59423-4</a></td><td>Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/60422-3/\">60422-3</a></td><td>Measles virus genotype [Identifier] in Specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mea-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mea-org</a></td></tr><tr><td><a href=\"https://loinc.org/65756-9/\">65756-9</a></td><td>Salmonella sp serovar [Type] in Isolate</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org-complete\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org-complete</a></td></tr><tr><td><a href=\"https://loinc.org/6578-9/\">6578-9</a></td><td>Vibrio sp identified in Blood by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href=\"https://loinc.org/6579-7/\">6579-7</a></td><td>Vibrio sp identified in Stool by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href=\"https://loinc.org/6581-3/\">6581-3</a></td><td>Vibrio sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-chol-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org</a></td></tr><tr><td><a href=\"https://loinc.org/6584-7/\">6584-7</a></td><td>Virus identified in Specimen by Culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-virus-cult-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-virus-cult-org</a></td></tr><tr><td><a href=\"https://loinc.org/6600-1/\">6600-1</a></td><td>Haemophilus sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-haem-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org</a></td></tr><tr><td><a href=\"https://loinc.org/6604-3/\">6604-3</a></td><td>Influenza virus identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-influenza-hxny-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org</a></td></tr><tr><td><a href=\"https://loinc.org/6609-2/\">6609-2</a></td><td>Listeria sp identified in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-lis-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-lis-org</a></td></tr><tr><td><a href=\"https://loinc.org/70569-9/\">70569-9</a></td><td>Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-mal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org</a></td></tr><tr><td><a href=\"https://loinc.org/74037-3/\">74037-3</a></td><td>Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-cjd-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cjd-org</a></td></tr><tr><td><a href=\"https://loinc.org/75756-7/\">75756-7</a></td><td>Bacteria identified in Isolate by MS.MALDI-TOF</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-maldi-tof-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-maldi-tof-org</a></td></tr><tr><td><a href=\"https://loinc.org/7899-8/\">7899-8</a></td><td>Hantavirus RNA [Presence] in Serum by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-hanta-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org</a></td></tr><tr><td><a href=\"https://loinc.org/82300-5/\">82300-5</a></td><td>Shigella sp [Presence] in Stool by Culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-shi-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org</a></td></tr><tr><td><a href=\"https://loinc.org/82301-3/\">82301-3</a></td><td>Salmonella sp [Presence] in Stool by Culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/86520-4/\">86520-4</a></td><td>Hantavirus RNA [Presence] in Blood by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-hanta-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org</a></td></tr><tr><td><a href=\"https://loinc.org/88585-5/\">88585-5</a></td><td>Legionella sp identified in Lower respiratory specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/88588-9/\">88588-9</a></td><td>Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-leg-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org</a></td></tr><tr><td><a href=\"https://loinc.org/90066-2/\">90066-2</a></td><td>Corynebacterium sp identified in Isolate by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href=\"https://loinc.org/92786-3/\">92786-3</a></td><td>Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-diph-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org</a></td></tr><tr><td><a href=\"https://loinc.org/93385-3/\">93385-3</a></td><td>Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/97313-1/\">97313-1</a></td><td>Salmonella sp DNA [Presence] in Stool by NAA with probe detection</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-sal-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org</a></td></tr><tr><td><a href=\"https://loinc.org/97513-6/\">97513-6</a></td><td>Campylobacter sp [Presence] in Specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-camp-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org</a></td></tr><tr><td><a href=\"https://loinc.org/9823-6/\">9823-6</a></td><td>Mycobacterium sp identified in Bronchial specimen by Organism specific culture</td><td><span title=\"RELATEDTO\">?</span><a href=\"CodeSystem-ch-elm-results-completion-vs.html#ch-elm-results-completion-vs-http.58.47.47fhir.46ch.47ig.47ch-elm.47ValueSet.47ch-elm-results-tub-org\">http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org</a></td></tr></table></li></ul></div>" ] ; fhir:ValueSet.url [ fhir:value "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification"] ; fhir:ValueSet.version [ fhir:value "1.14.1"] ; fhir:ValueSet.name [ fhir:value "ChElmExpectingOrganismSpecification"] ; fhir:ValueSet.title [ fhir:value "CH ELM Expecting Organism Specification"] ; fhir:ValueSet.status [ fhir:value "active"] ; fhir:ValueSet.experimental [ fhir:value "false"^^xsd:boolean] ; fhir:ValueSet.date [ fhir:value "2026-07-01T16:10:31+00:00"^^xsd:dateTime] ; fhir:ValueSet.publisher [ fhir:value "Federal Office of Public Health FOPH"] ; fhir:ValueSet.contact [ fhir:index 0 ; fhir:ContactDetail.name [ fhir:value "Federal Office of Public Health FOPH" ] ; fhir:ContactDetail.telecom [ fhir:index 0 ; fhir:ContactPoint.system [ fhir:value "url" ] ; fhir:ContactPoint.value [ fhir:value "https://www.bag.admin.ch/bag/en/home/das-bag/kontakt-standort.html" ] ] ] ; fhir:ValueSet.description [ fhir:value "This CH ELM value set includes the leading codes for the laboratory test results, which have to be completed by another code for the expecting organism."] ; fhir:ValueSet.jurisdiction [ fhir:index 0 ; fhir:CodeableConcept.coding [ fhir:index 0 ; fhir:Coding.system [ fhir:value "urn:iso:std:iso:3166" ] ; fhir:Coding.code [ fhir:value "CH" ] ] ] ; fhir:ValueSet.copyright [ fhir:value "CC0-1.0"] ; fhir:ValueSet.compose [ fhir:ValueSet.compose.include [ fhir:index 0 ; fhir:ValueSet.compose.include.system [ fhir:value "http://loinc.org" ] ; fhir:ValueSet.compose.include.concept [ fhir:index 0 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "100911-7" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Campylobacter sp [Presence] in Stool by Organism specific culture" ] ], [ fhir:index 1 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "101003-2" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Monkeypox virus clade [Type] in Specimen by Sequencing" ] ], [ fhir:index 2 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "101219-4" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Legionella sp DNA [Presence] in Specimen by NAA with probe detection" ] ], [ fhir:index 3 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "104376-9" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection" ] ], [ fhir:index 4 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "14357-8" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain" ] ], [ fhir:index 5 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "17563-8" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Salmonella sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 6 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "17576-0" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Shigella sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 7 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "22826-2" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Influenza virus A identified in Specimen by Bioassay" ] ], [ fhir:index 8 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "24102-6" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)" ] ], [ fhir:index 9 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "32781-7" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Legionella sp Ag [Presence] in Urine" ] ], [ fhir:index 10 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "38353-9" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Streptococcus sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 11 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "39025-2" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing" ] ], [ fhir:index 12 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "41625-5" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Brucella sp DNA [Identifier] in Specimen by NAA with probe detection" ] ], [ fhir:index 13 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "43389-6" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Streptococcus sp identified in Isolate by Organism specific culture" ] ], [ fhir:index 14 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "46454-5" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Shigella sp [Presence] in Specimen by Organism specific culture" ] ], [ fhir:index 15 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "46732-4" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection" ] ], [ fhir:index 16 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "47085-6" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Plasmodium sp DNA [Presence] in Blood by NAA with probe detection" ] ], [ fhir:index 17 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "49612-5" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Salmonella sp DNA [Presence] in Specimen by NAA with probe detection" ] ], [ fhir:index 18 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "50687-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Plasmodium sp Ag [Presence] in Blood" ] ], [ fhir:index 19 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "50697-2" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Influenza virus A Ag [Identifier] in Isolate" ] ], [ fhir:index 20 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "51587-4" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Plasmodium sp [Presence] in Blood by Light microscopy" ] ], [ fhir:index 21 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "534-8" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture" ] ], [ fhir:index 22 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "539-7" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Mycobacterium sp identified in Sputum by Organism specific culture" ] ], [ fhir:index 23 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "540-5" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Mycobacterium sp identified in Tissue by Organism specific culture" ] ], [ fhir:index 24 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "541-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Mycobacterium sp identified in Urine by Organism specific culture" ] ], [ fhir:index 25 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "543-9" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Mycobacterium sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 26 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "552-0" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Brucella sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 27 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "58473-0" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection" ] ], [ fhir:index 28 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "589-2" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Legionella sp identified in Bronchial specimen by Organism specific culture" ] ], [ fhir:index 29 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "590-0" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Legionella sp identified in Sputum by Organism specific culture" ] ], [ fhir:index 30 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "593-4" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Legionella sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 31 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "59423-4" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection" ] ], [ fhir:index 32 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "60422-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Measles virus genotype [Identifier] in Specimen by NAA with probe detection" ] ], [ fhir:index 33 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "65756-9" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Salmonella sp serovar [Type] in Isolate" ] ], [ fhir:index 34 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "6578-9" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Vibrio sp identified in Blood by Organism specific culture" ] ], [ fhir:index 35 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "6579-7" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Vibrio sp identified in Stool by Organism specific culture" ] ], [ fhir:index 36 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "6581-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Vibrio sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 37 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "6584-7" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Virus identified in Specimen by Culture" ] ], [ fhir:index 38 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "6600-1" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Haemophilus sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 39 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "6604-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Influenza virus identified in Specimen by Organism specific culture" ] ], [ fhir:index 40 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "6609-2" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Listeria sp identified in Specimen by Organism specific culture" ] ], [ fhir:index 41 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "70569-9" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay" ] ], [ fhir:index 42 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "74037-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy" ] ], [ fhir:index 43 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "75756-7" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Bacteria identified in Isolate by MS.MALDI-TOF" ] ], [ fhir:index 44 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "7899-8" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Hantavirus RNA [Presence] in Serum by NAA with probe detection" ] ], [ fhir:index 45 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "82300-5" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Shigella sp [Presence] in Stool by Culture" ] ], [ fhir:index 46 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "82301-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Salmonella sp [Presence] in Stool by Culture" ] ], [ fhir:index 47 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "86520-4" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Hantavirus RNA [Presence] in Blood by NAA with probe detection" ] ], [ fhir:index 48 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "88585-5" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Legionella sp identified in Lower respiratory specimen by Organism specific culture" ] ], [ fhir:index 49 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "88588-9" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection" ] ], [ fhir:index 50 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "90066-2" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Corynebacterium sp identified in Isolate by Organism specific culture" ] ], [ fhir:index 51 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "92786-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture" ] ], [ fhir:index 52 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "93385-3" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture" ] ], [ fhir:index 53 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "97313-1" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Salmonella sp DNA [Presence] in Stool by NAA with probe detection" ] ], [ fhir:index 54 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "97513-6" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Campylobacter sp [Presence] in Specimen by Organism specific culture" ] ], [ fhir:index 55 ; fhir:ValueSet.compose.include.concept.code [ fhir:value "9823-6" ] ; fhir:ValueSet.compose.include.concept.display [ fhir:value "Mycobacterium sp identified in Bronchial specimen by Organism specific culture" ] ] ] ] . # - ontology header ------------------------------------------------------------ <http://hl7.org/fhir/ValueSet/ch-elm-expecting-organism-specification.ttl> a owl:Ontology ; owl:imports fhir:fhir.ttl ; owl:versionIRI <http://build.fhir.org/ValueSet/ch-elm-expecting-organism-specification.ttl> .
IG © 2023+ Federal Office of Public Health FOPH. Package ch.fhir.ig.ch-elm#1.14.1 based on FHIR 4.0.1. Generated 2026-07-01
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