CH ELM (R4)
1.14.1 - release Switzerland flag

CH ELM (R4), published by Federal Office of Public Health FOPH. This guide is not an authorized publication; it is the continuous build for version 1.14.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/ahdis/ch-elm/ and changes regularly. See the Directory of published versions

: 63Doc - Tuberculosis Genotyping - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Bundle/63Doc-Tb-Genotyping> a fhir:Bundle ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "63Doc-Tb-Genotyping"] ;
  fhir:Bundle.identifier [
     fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ] ;
     fhir:Identifier.value [ fhir:value "urn:uuid:0ed5f82b-06e9-427b-8546-e841a33d49e8" ]
  ] ;
  fhir:Bundle.type [ fhir:value "document"] ;
  fhir:Bundle.timestamp [ fhir:value "2024-09-10T12:00:00+02:00"^^xsd:dateTime] ;
  fhir:Bundle.entry [
     fhir:index 0 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/Composition/63Comp-Genotyping" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/Composition/63Comp-Genotyping>
  ], [
     fhir:index 1 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/DiagnosticReport/63DR-Genotyping" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/DiagnosticReport/63DR-Genotyping>
  ], [
     fhir:index 2 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/Patient/Pat-003" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/Patient/Pat-003>
  ], [
     fhir:index 3 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/Observation/63Obs-Genotyping" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/Observation/63Obs-Genotyping>
  ], [
     fhir:index 4 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/Specimen/63Spec-Genotyping" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/Specimen/63Spec-Genotyping>
  ], [
     fhir:index 5 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/ServiceRequest/63SR-Genotyping" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/ServiceRequest/63SR-Genotyping>
  ], [
     fhir:index 6 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/Organization/1Org-Labor" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/Organization/1Org-Labor>
  ], [
     fhir:index 7 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/PractitionerRole/PR-PeterHauser" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/PractitionerRole/PR-PeterHauser>
  ], [
     fhir:index 8 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/Practitioner/Pract-PeterHauser" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/Practitioner/Pract-PeterHauser>
  ], [
     fhir:index 9 ;
     fhir:Bundle.entry.fullUrl [ fhir:value "http://test.fhir.ch/r4/Organization/Org-PeterHauser" ] ;
     fhir:Bundle.entry.resource <http://test.fhir.ch/r4/Organization/Org-PeterHauser>
  ] .

<http://test.fhir.ch/r4/Composition/63Comp-Genotyping> a fhir:Composition ;
  fhir:Resource.id [ fhir:value "63Comp-Genotyping"] ;
  fhir:Resource.language [ fhir:value "de-CH"] ;
  fhir:Composition.identifier [
     fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ] ;
     fhir:Identifier.value [ fhir:value "urn:uuid:0ed5f82b-06e9-427b-8546-e841a33d49e8" ]
  ] ;
  fhir:Composition.status [ fhir:value "final"] ;
  fhir:Composition.type [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       a sct:4241000179101 ;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
       fhir:Coding.version [ fhir:value "http://snomed.info/sct/2011000195101" ] ;
       fhir:Coding.code [ fhir:value "4241000179101" ] ;
       fhir:Coding.display [ fhir:value "Laborbericht" ]
     ], [
       fhir:index 1 ;
       a loinc:11502-2 ;
       fhir:Coding.system [ fhir:value "http://loinc.org" ] ;
       fhir:Coding.code [ fhir:value "11502-2" ] ;
       fhir:Coding.display [ fhir:value "Laboratory report" ]
     ]
  ] ;
  fhir:Composition.subject [
     fhir:link <http://hl7.org/fhir/Patient/Pat-003> ;
     fhir:Reference.reference [ fhir:value "Patient/Pat-003" ]
  ] ;
  fhir:Composition.date [ fhir:value "2024-09-10T12:00:00+02:00"^^xsd:dateTime] ;
  fhir:Composition.author [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/Organization/1Org-Labor> ;
     fhir:Reference.reference [ fhir:value "Organization/1Org-Labor" ]
  ] ;
  fhir:Composition.title [ fhir:value "Laborbericht vom 10.09.2024"] ;
  fhir:Composition.section [
     fhir:index 0 ;
     fhir:Composition.section.title [ fhir:value "Genotyping" ] ;
     fhir:Composition.section.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         a sct:726528006 ;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
         fhir:Coding.code [ fhir:value "726528006" ] ;
         fhir:Coding.display [ fhir:value "Genotyping (qualifier value)" ]
       ]
     ] ;
     fhir:Composition.section.entry [
       fhir:index 0 ;
       fhir:link <http://hl7.org/fhir/Observation/63Obs-Genotyping> ;
       fhir:Reference.reference [ fhir:value "Observation/63Obs-Genotyping" ]
     ]
  ] .

<http://hl7.org/fhir/Patient/Pat-003> a fhir:Patient .

<http://hl7.org/fhir/Organization/1Org-Labor> a fhir:Organization .

<http://hl7.org/fhir/Observation/63Obs-Genotyping> a fhir:Observation .

<http://test.fhir.ch/r4/DiagnosticReport/63DR-Genotyping> a fhir:DiagnosticReport ;
  fhir:Resource.id [ fhir:value "63DR-Genotyping"] ;
  fhir:DomainResource.extension [
     fhir:index 0 ;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/5.0/StructureDefinition/extension-DiagnosticReport.composition" ] ;
     fhir:Extension.valueReference [
       fhir:link <http://hl7.org/fhir/Composition/63Comp-Genotyping> ;
       fhir:Reference.reference [ fhir:value "Composition/63Comp-Genotyping" ]
     ]
  ] ;
  fhir:DiagnosticReport.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "urn:ietf:rfc:3986" ] ;
     fhir:Identifier.value [ fhir:value "urn:uuid:0ed5f82b-06e9-427b-8546-e841a33d49e8" ]
  ] ;
  fhir:DiagnosticReport.basedOn [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/ServiceRequest/63SR-Genotyping> ;
     fhir:Reference.reference [ fhir:value "ServiceRequest/63SR-Genotyping" ]
  ] ;
  fhir:DiagnosticReport.status [ fhir:value "final"] ;
  fhir:DiagnosticReport.code [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       a loinc:11502-2 ;
       fhir:Coding.system [ fhir:value "http://loinc.org" ] ;
       fhir:Coding.code [ fhir:value "11502-2" ] ;
       fhir:Coding.display [ fhir:value "Laboratory report" ]
     ]
  ] ;
  fhir:DiagnosticReport.subject [
     fhir:link <http://hl7.org/fhir/Patient/Pat-003> ;
     fhir:Reference.reference [ fhir:value "Patient/Pat-003" ]
  ] ;
  fhir:DiagnosticReport.performer [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/Organization/1Org-Labor> ;
     fhir:Reference.reference [ fhir:value "Organization/1Org-Labor" ]
  ] ;
  fhir:DiagnosticReport.specimen [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/Specimen/63Spec-Genotyping> ;
     fhir:Reference.reference [ fhir:value "Specimen/63Spec-Genotyping" ]
  ] ;
  fhir:DiagnosticReport.result [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/Observation/63Obs-Genotyping> ;
     fhir:Reference.reference [ fhir:value "Observation/63Obs-Genotyping" ]
  ] .

<http://hl7.org/fhir/Composition/63Comp-Genotyping> a fhir:Composition .

<http://hl7.org/fhir/ServiceRequest/63SR-Genotyping> a fhir:ServiceRequest .

<http://hl7.org/fhir/Specimen/63Spec-Genotyping> a fhir:Specimen .

<http://test.fhir.ch/r4/Patient/Pat-003> a fhir:Patient ;
  fhir:Resource.id [ fhir:value "Pat-003"] ;
  fhir:Patient.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "urn:oid:2.16.756.5.32" ] ;
     fhir:Identifier.value [ fhir:value "7561234567866" ]
  ] ;
  fhir:Patient.name [
     fhir:index 0 ;
     fhir:HumanName.family [ fhir:value "Dupont" ] ;
     fhir:HumanName.given [
       fhir:value "Antoine" ;
       fhir:index 0
     ]
  ] ;
  fhir:Patient.telecom [
     fhir:index 0 ;
     fhir:ContactPoint.system [ fhir:value "phone" ] ;
     fhir:ContactPoint.value [ fhir:value "+41 76 222 55 22" ]
  ] ;
  fhir:Patient.gender [ fhir:value "female"] ;
  fhir:Patient.birthDate [ fhir:value "1981-02-07"^^xsd:date] ;
  fhir:Patient.address [
     fhir:index 0 ;
     fhir:Address.use [ fhir:value "home" ] ;
     fhir:Address.line [
       fhir:value "Rue de la république 10" ;
       fhir:index 0 ;
       fhir:Element.extension [
         fhir:index 0 ;
         fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-streetName" ] ;
         fhir:Extension.valueString [ fhir:value "Rue de la république" ]
       ], [
         fhir:index 1 ;
         fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-houseNumber" ] ;
         fhir:Extension.valueString [ fhir:value "10" ]
       ]
     ] ;
     fhir:Address.city [ fhir:value "Carouge" ] ;
     fhir:Address.state [ fhir:value "GE" ] ;
     fhir:Address.postalCode [ fhir:value "1227" ] ;
     fhir:Address.country [
       fhir:value "CH" ;
       fhir:Element.extension [
         fhir:index 0 ;
         fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/iso21090-codedString" ] ;
         fhir:Extension.valueCoding [
           fhir:Coding.system [ fhir:value "urn:iso:std:iso:3166" ] ;
           fhir:Coding.code [ fhir:value "CH" ]
         ]
       ]
     ]
  ] .

<http://test.fhir.ch/r4/Observation/63Obs-Genotyping> a fhir:Observation ;
  fhir:Resource.id [ fhir:value "63Obs-Genotyping"] ;
  fhir:Observation.status [ fhir:value "final"] ;
  fhir:Observation.category [
     fhir:index 0 ;
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ] ;
       fhir:Coding.code [ fhir:value "laboratory" ] ;
       fhir:Coding.display [ fhir:value "Laboratory" ]
     ]
  ] ;
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       a loinc:94053-6 ;
       fhir:Coding.system [ fhir:value "http://loinc.org" ] ;
       fhir:Coding.code [ fhir:value "94053-6" ] ;
       fhir:Coding.display [ fhir:value "Mycobacterium tuberculosis complex resistance panel by Molecular genetics method" ]
     ]
  ] ;
  fhir:Observation.subject [
     fhir:link <http://hl7.org/fhir/Patient/Pat-003> ;
     fhir:Reference.reference [ fhir:value "Patient/Pat-003" ]
  ] ;
  fhir:Observation.effectiveDateTime [ fhir:value "2024-09-10T14:20:00+02:00"^^xsd:dateTime] ;
  fhir:Observation.performer [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/Organization/1Org-Labor> ;
     fhir:Reference.reference [ fhir:value "Organization/1Org-Labor" ]
  ] ;
  fhir:Observation.specimen [
     fhir:link <http://hl7.org/fhir/Specimen/63Spec-Genotyping> ;
     fhir:Reference.reference [ fhir:value "Specimen/63Spec-Genotyping" ]
  ] ;
  fhir:Observation.component [
     fhir:index 0 ;
     fhir:Observation.component.code [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         a loinc:63072-3 ;
         fhir:Coding.system [ fhir:value "http://loinc.org" ] ;
         fhir:Coding.code [ fhir:value "63072-3" ] ;
         fhir:Coding.display [ fhir:value "Mycobacterium tuberculosis inhA gene isoniazid low level resistance mutation [Presence] by Molecular method" ]
       ]
     ] ;
     fhir:Observation.component.dataAbsentReason [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/data-absent-reason" ] ;
         fhir:Coding.code [ fhir:value "not-applicable" ]
       ]
     ] ;
     fhir:Observation.component.interpretation [
       fhir:index 0 ;
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" ] ;
         fhir:Coding.code [ fhir:value "POS" ] ;
         fhir:Coding.display [ fhir:value "Positive" ]
       ]
     ]
  ] .

<http://test.fhir.ch/r4/Specimen/63Spec-Genotyping> a fhir:Specimen ;
  fhir:Resource.id [ fhir:value "63Spec-Genotyping"] ;
  fhir:Specimen.subject [
     fhir:link <http://hl7.org/fhir/Patient/Pat-003> ;
     fhir:Reference.reference [ fhir:value "Patient/Pat-003" ]
  ] ;
  fhir:Specimen.collection [
     fhir:Specimen.collection.collectedDateTime [ fhir:value "2024-09-08"^^xsd:date ]
  ] .

<http://test.fhir.ch/r4/ServiceRequest/63SR-Genotyping> a fhir:ServiceRequest ;
  fhir:Resource.id [ fhir:value "63SR-Genotyping"] ;
  fhir:ServiceRequest.identifier [
     fhir:index 0 ;
     fhir:Identifier.value [ fhir:value "26500923622" ]
  ] ;
  fhir:ServiceRequest.status [ fhir:value "completed"] ;
  fhir:ServiceRequest.intent [ fhir:value "order"] ;
  fhir:ServiceRequest.code [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       a loinc:94053-6 ;
       fhir:Coding.system [ fhir:value "http://loinc.org" ] ;
       fhir:Coding.code [ fhir:value "94053-6" ] ;
       fhir:Coding.display [ fhir:value "Mycobacterium tuberculosis complex resistance panel by Molecular genetics method" ]
     ]
  ] ;
  fhir:ServiceRequest.subject [
     fhir:link <http://hl7.org/fhir/Patient/Pat-003> ;
     fhir:Reference.reference [ fhir:value "Patient/Pat-003" ]
  ] ;
  fhir:ServiceRequest.requester [
     fhir:link <http://hl7.org/fhir/PractitionerRole/PR-PeterHauser> ;
     fhir:Reference.reference [ fhir:value "PractitionerRole/PR-PeterHauser" ]
  ] ;
  fhir:ServiceRequest.specimen [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/Specimen/63Spec-Genotyping> ;
     fhir:Reference.reference [ fhir:value "Specimen/63Spec-Genotyping" ]
  ] .

<http://hl7.org/fhir/PractitionerRole/PR-PeterHauser> a fhir:PractitionerRole .

<http://test.fhir.ch/r4/Organization/1Org-Labor> a fhir:Organization ;
  fhir:Resource.id [ fhir:value "1Org-Labor"] ;
  fhir:Organization.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "urn:oid:2.51.1.3" ] ;
     fhir:Identifier.value [ fhir:value "7601002331470" ]
  ] ;
  fhir:Organization.name [ fhir:value "SanLab"] .

<http://test.fhir.ch/r4/PractitionerRole/PR-PeterHauser> a fhir:PractitionerRole ;
  fhir:Resource.id [ fhir:value "PR-PeterHauser"] ;
  fhir:PractitionerRole.practitioner [
     fhir:link <http://hl7.org/fhir/Practitioner/Pract-PeterHauser> ;
     fhir:Reference.reference [ fhir:value "Practitioner/Pract-PeterHauser" ]
  ] ;
  fhir:PractitionerRole.organization [
     fhir:link <http://hl7.org/fhir/Organization/Org-PeterHauser> ;
     fhir:Reference.reference [ fhir:value "Organization/Org-PeterHauser" ]
  ] .

<http://hl7.org/fhir/Practitioner/Pract-PeterHauser> a fhir:Practitioner .

<http://hl7.org/fhir/Organization/Org-PeterHauser> a fhir:Organization .

<http://test.fhir.ch/r4/Practitioner/Pract-PeterHauser> a fhir:Practitioner ;
  fhir:Resource.id [ fhir:value "Pract-PeterHauser"] ;
  fhir:Practitioner.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "urn:oid:2.51.1.3" ] ;
     fhir:Identifier.value [ fhir:value "7601000000514" ]
  ] ;
  fhir:Practitioner.name [
     fhir:index 0 ;
     fhir:HumanName.family [ fhir:value "Hauser" ] ;
     fhir:HumanName.given [
       fhir:value "Peter" ;
       fhir:index 0
     ]
  ] ;
  fhir:Practitioner.telecom [
     fhir:index 0 ;
     fhir:ContactPoint.system [ fhir:value "email" ] ;
     fhir:ContactPoint.value [ fhir:value "peter.hauser@hauserpraxis.ch" ]
  ], [
     fhir:index 1 ;
     fhir:ContactPoint.system [ fhir:value "phone" ] ;
     fhir:ContactPoint.value [ fhir:value "+41 79 222 33 44" ]
  ] .

<http://test.fhir.ch/r4/Organization/Org-PeterHauser> a fhir:Organization ;
  fhir:Resource.id [ fhir:value "Org-PeterHauser"] ;
  fhir:Organization.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "urn:oid:2.16.756.5.45" ] ;
     fhir:Identifier.value [ fhir:value "A74966168" ]
  ] ;
  fhir:Organization.name [ fhir:value "Praxis Dr. Hauser"] ;
  fhir:Organization.address [
     fhir:index 0 ;
     fhir:Address.line [
       fhir:value "Hauptstrasse 10" ;
       fhir:index 0 ;
       fhir:Element.extension [
         fhir:index 0 ;
         fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-streetName" ] ;
         fhir:Extension.valueString [ fhir:value "Hauptstrasse" ]
       ], [
         fhir:index 1 ;
         fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-houseNumber" ] ;
         fhir:Extension.valueString [ fhir:value "10" ]
       ]
     ] ;
     fhir:Address.city [ fhir:value "Solothurn" ] ;
     fhir:Address.postalCode [ fhir:value "4500" ]
  ] .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Bundle/63Doc-Tb-Genotyping.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/Bundle/63Doc-Tb-Genotyping.ttl> .