CH ELM (R4)
1.12.0 - ci-build
CH ELM (R4)
1.12.0 - ci-build
CH ELM (R4), published by Federal Office of Public Health FOPH. This guide is not an authorized publication; it is the continuous build for version 1.12.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/ahdis/ch-elm/ and changes regularly. See the Directory of published versions
| Official URL: http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification | Version: 1.12.0 | |||
| Active as of 2025-10-20 | Computable Name: ChElmExpectingOrganismSpecification | |||
Copyright/Legal: CC0-1.0 |
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This CH ELM value set includes the leading codes for the laboratory test results, which have to be completed by another code for the expecting organism.
References
This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)
http://loinc.org version Not Stated (use latest from terminology server)| Code | Display | CH ELM Expecting Organism Specification To Results Completion Vs |
| 100911-7 | Campylobacter sp [Presence] in Stool by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
| 101003-2 | Monkeypox virus clade [Type] in Specimen by Sequencing | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mpox-org |
| 101219-4 | Legionella sp DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 104376-9 | Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 14357-8 | Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org |
| 17563-8 | Salmonella sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org |
| 22826-2 | Influenza virus A identified in Specimen by Bioassay | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org |
| 24102-6 | Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID) | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 32781-7 | Legionella sp Ag [Presence] in Urine | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 38353-9 | Streptococcus sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org |
| 39025-2 | Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org |
| 41625-5 | Brucella sp DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org |
| 43389-6 | Streptococcus sp identified in Isolate by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org |
| 46454-5 | Shigella sp [Presence] in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 46732-4 | Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tul-org |
| 47085-6 | Plasmodium sp DNA [Presence] in Blood by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 49612-5 | Salmonella sp DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org |
| 50687-3 | Plasmodium sp Ag [Presence] in Blood | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 50697-2 | Influenza virus A Ag [Identifier] in Isolate | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org |
| 51587-4 | Plasmodium sp [Presence] in Blood by Light microscopy | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 534-8 | Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org |
| 539-7 | Mycobacterium sp identified in Sputum by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org |
| 540-5 | Mycobacterium sp identified in Tissue by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org |
| 541-3 | Mycobacterium sp identified in Urine by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org |
| 543-9 | Mycobacterium sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org |
| 552-0 | Brucella sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org |
| 58473-0 | Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org |
| 589-2 | Legionella sp identified in Bronchial specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 590-0 | Legionella sp identified in Sputum by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 593-4 | Legionella sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 59423-4 | Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org |
| 60422-3 | Measles virus genotype [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mea-org |
| 65756-9 | Salmonella sp serovar [Type] in Isolate | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org-complete |
| 6578-9 | Vibrio sp identified in Blood by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6579-7 | Vibrio sp identified in Stool by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6581-3 | Vibrio sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org |
| 6584-7 | Virus identified in Specimen by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-virus-cult-org |
| 6600-1 | Haemophilus sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org |
| 6604-3 | Influenza virus identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org |
| 6609-2 | Listeria sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-lis-org |
| 70569-9 | Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org |
| 74037-3 | Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cjd-org |
| 75756-7 | Bacteria identified in Isolate by MS.MALDI-TOF | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-maldi-tof-org |
| 7899-8 | Hantavirus RNA [Presence] in Serum by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org |
| 82300-5 | Shigella sp [Presence] in Stool by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org |
| 82301-3 | Salmonella sp [Presence] in Stool by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org |
| 86520-4 | Hantavirus RNA [Presence] in Blood by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org |
| 88585-5 | Legionella sp identified in Lower respiratory specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 88588-9 | Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org |
| 90066-2 | Corynebacterium sp identified in Isolate by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 92786-3 | Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org |
| 93385-3 | Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org |
| 97313-1 | Salmonella sp DNA [Presence] in Stool by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org |
| 97513-6 | Campylobacter sp [Presence] in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org |
| 9823-6 | Mycobacterium sp identified in Bronchial specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org |
Expansion from tx.fhir.org based on Loinc v2.81
This value set contains 55 concepts
| System | Code | Display (en) | JSON | XML | CH ELM Expecting Organism Specification To Results Completion Vs |
http://loinc.org | 100911-7 | Campylobacter sp [Presence] in Stool by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org | ||
http://loinc.org | 101003-2 | Monkeypox virus clade [Type] in Specimen by Sequencing | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mpox-org | ||
http://loinc.org | 101219-4 | Legionella sp DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org | ||
http://loinc.org | 104376-9 | Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org | ||
http://loinc.org | 14357-8 | Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-men-org | ||
http://loinc.org | 17563-8 | Salmonella sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org | ||
http://loinc.org | 22826-2 | Influenza virus A identified in Specimen by Bioassay | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org | ||
http://loinc.org | 24102-6 | Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID) | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org | ||
http://loinc.org | 32781-7 | Legionella sp Ag [Presence] in Urine | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org | ||
http://loinc.org | 38353-9 | Streptococcus sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org | ||
http://loinc.org | 39025-2 | Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org | ||
http://loinc.org | 41625-5 | Brucella sp DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org | ||
http://loinc.org | 43389-6 | Streptococcus sp identified in Isolate by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-pneu-org | ||
http://loinc.org | 46454-5 | Shigella sp [Presence] in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org | ||
http://loinc.org | 46732-4 | Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tul-org | ||
http://loinc.org | 47085-6 | Plasmodium sp DNA [Presence] in Blood by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org | ||
http://loinc.org | 49612-5 | Salmonella sp DNA [Presence] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org | ||
http://loinc.org | 50687-3 | Plasmodium sp Ag [Presence] in Blood | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org | ||
http://loinc.org | 50697-2 | Influenza virus A Ag [Identifier] in Isolate | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org | ||
http://loinc.org | 51587-4 | Plasmodium sp [Presence] in Blood by Light microscopy | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org | ||
http://loinc.org | 534-8 | Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org | ||
http://loinc.org | 539-7 | Mycobacterium sp identified in Sputum by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org | ||
http://loinc.org | 540-5 | Mycobacterium sp identified in Tissue by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org | ||
http://loinc.org | 541-3 | Mycobacterium sp identified in Urine by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org | ||
http://loinc.org | 543-9 | Mycobacterium sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org | ||
http://loinc.org | 552-0 | Brucella sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-bru-org | ||
http://loinc.org | 58473-0 | Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org | ||
http://loinc.org | 589-2 | Legionella sp identified in Bronchial specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org | ||
http://loinc.org | 590-0 | Legionella sp identified in Sputum by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org | ||
http://loinc.org | 593-4 | Legionella sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org | ||
http://loinc.org | 59423-4 | Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org | ||
http://loinc.org | 60422-3 | Measles virus genotype [Identifier] in Specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mea-org | ||
http://loinc.org | 65756-9 | Salmonella sp serovar [Type] in Isolate | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org-complete | ||
http://loinc.org | 6578-9 | Vibrio sp identified in Blood by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org | ||
http://loinc.org | 6579-7 | Vibrio sp identified in Stool by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org | ||
http://loinc.org | 6581-3 | Vibrio sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-chol-org | ||
http://loinc.org | 6584-7 | Virus identified in Specimen by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-virus-cult-org | ||
http://loinc.org | 6600-1 | Haemophilus sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-haem-org | ||
http://loinc.org | 6604-3 | Influenza virus identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-influenza-hxny-org | ||
http://loinc.org | 6609-2 | Listeria sp identified in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-lis-org | ||
http://loinc.org | 70569-9 | Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-mal-org | ||
http://loinc.org | 74037-3 | Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-cjd-org | ||
http://loinc.org | 75756-7 | Bacteria identified in Isolate by MS.MALDI-TOF | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-maldi-tof-org | ||
http://loinc.org | 7899-8 | Hantavirus RNA [Presence] in Serum by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org | ||
http://loinc.org | 82300-5 | Shigella sp [Presence] in Stool by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-shi-org | ||
http://loinc.org | 82301-3 | Salmonella sp [Presence] in Stool by Culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org | ||
http://loinc.org | 86520-4 | Hantavirus RNA [Presence] in Blood by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-hanta-org | ||
http://loinc.org | 88585-5 | Legionella sp identified in Lower respiratory specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org | ||
http://loinc.org | 88588-9 | Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-leg-org | ||
http://loinc.org | 90066-2 | Corynebacterium sp identified in Isolate by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org | ||
http://loinc.org | 92786-3 | Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-diph-org | ||
http://loinc.org | 93385-3 | Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org | ||
http://loinc.org | 97313-1 | Salmonella sp DNA [Presence] in Stool by NAA with probe detection | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-sal-org | ||
http://loinc.org | 97513-6 | Campylobacter sp [Presence] in Specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org | ||
http://loinc.org | 9823-6 | Mycobacterium sp identified in Bronchial specimen by Organism specific culture | ?http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-tub-org |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |