INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/WorldHealthOrganization/smart-ips-pilgrimage --branch main repo DEBUG:root:Time to deadline 35879.997839 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35860.562418 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35859.241755 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 120 packages in 5s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.9.0 npm notice Changelog: npm notice Run `npm install -g npm@10.9.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/WorldHealthOrganization/smart-ips-pilgrimage/ -out /scratch/repo DEBUG:root:Time to deadline 35854.203593 seconds FHIR IG Publisher Version 1.7.2 (Git# a53365dccbf0). Built 2024-11-12T22:35:14.748Z (36 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/WorldHealthOrganization/smart-ips-pilgrimage/ -out /scratch/repo Start Clock @ Thursday, November 14, 2024, 11:13:16 AM Coordinated Universal Time (2024-11-14T11:13:16Z) Build FHIR IG from /scratch/repo (00:00.031 / 00:00.032, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.036, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.041, 89Mb) Run Sushi on /scratch/repo (00:00.006 / 00:00.047, 89Mb) Sushi: info Running SUSHI v3.12.1 (implements FHIR Shorthand specification v3.0.0) (00:00.679 / 00:00.727, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.728, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.728, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.729, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.729, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.706 / 00:01.436, 113Mb) Sushi: info Importing FSH text... (00:00.164 / 00:01.600, 113Mb) Sushi: info Preprocessed 30 documents with 26 aliases. (00:00.376 / 00:01.977, 113Mb) Sushi: info Imported 12 definitions and 58 instances. (00:00.033 / 00:02.010, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:02.013, 113Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.037 / 00:02.050, 113Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.122 / 00:02.172, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.015 / 00:02.187, 113Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.109 / 00:02.297, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.0.2... (00:00.530 / 00:02.827, 113Mb) Sushi: info Did not find hl7.terminology.r4#6.0.2 in /home/fhiruser/.fhir/packages. (00:00.034 / 00:02.862, 113Mb) Sushi: info Downloading hl7.terminology.r4#6.0.2... https://packages.fhir.org/hl7.terminology.r4/6.0.2 (00:00.000 / 00:02.862, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.0.2 (00:02.496 / 00:05.358, 113Mb) Sushi: info Loaded package hl7.terminology.r4#6.0.2 (00:02.273 / 00:07.631, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.476 / 00:08.108, 113Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.541 / 00:08.650, 113Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:08.650, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:01.990 / 00:10.641, 113Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.521 / 00:12.163, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for who.base#dev... (00:00.000 / 00:12.163, 113Mb) Sushi: info Did not find who.base#dev in /home/fhiruser/.fhir/packages. (00:00.807 / 00:12.970, 113Mb) Sushi: info Falling back to who.base#current since who.base#dev is not locally cached. To avoid this, add who.base#dev to your local FHIR cache by building it locally with the HL7 FHIR IG Publisher. (00:00.000 / 00:12.971, 113Mb) Sushi: error Failed to load who.base#dev: The package who.base#current is not available on https://build.fhir.org/ig/qas.json, so no current version can be loaded (00:00.810 / 00:13.782, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for ihe.iti.mcsd#current... (00:00.000 / 00:13.782, 113Mb) Sushi: info Did not find ihe.iti.mcsd#current in /home/fhiruser/.fhir/packages. (00:00.773 / 00:14.556, 113Mb) Sushi: info Downloading ihe.iti.mcsd#current... https://build.fhir.org/ig/IHE/ITI.mCSD/branches/main/package.tgz (00:00.055 / 00:14.611, 113Mb) Sushi: info Downloaded ihe.iti.mcsd#current (00:00.015 / 00:14.626, 113Mb) Sushi: info Loaded package ihe.iti.mcsd#current (00:00.886 / 00:15.513, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.ips#1.1.0... (00:00.000 / 00:15.514, 113Mb) Sushi: info Did not find hl7.fhir.uv.ips#1.1.0 in /home/fhiruser/.fhir/packages. (00:00.812 / 00:16.326, 113Mb) Sushi: info Downloading hl7.fhir.uv.ips#1.1.0... https://packages.fhir.org/hl7.fhir.uv.ips/1.1.0 (00:00.000 / 00:16.327, 113Mb) Sushi: info Downloaded hl7.fhir.uv.ips#1.1.0 (00:01.757 / 00:18.084, 113Mb) Sushi: info Loaded package hl7.fhir.uv.ips#1.1.0 (00:01.065 / 00:19.150, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.sdc#3.0.0... (00:00.000 / 00:19.150, 113Mb) Sushi: info Did not find hl7.fhir.uv.sdc#3.0.0 in /home/fhiruser/.fhir/packages. (00:00.988 / 00:20.139, 113Mb) Sushi: info Downloading hl7.fhir.uv.sdc#3.0.0... https://packages.fhir.org/hl7.fhir.uv.sdc/3.0.0 (00:00.000 / 00:20.139, 113Mb) Sushi: info Downloaded hl7.fhir.uv.sdc#3.0.0 (00:01.300 / 00:21.440, 113Mb) Sushi: info Loaded package hl7.fhir.uv.sdc#3.0.0 (00:01.096 / 00:22.537, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.cpg#current... (00:00.000 / 00:22.537, 113Mb) Sushi: info Did not find hl7.fhir.uv.cpg#current in /home/fhiruser/.fhir/packages. (00:01.014 / 00:23.552, 113Mb) Sushi: info Downloading hl7.fhir.uv.cpg#current... https://build.fhir.org/ig/HL7/cqf-recommendations/branches/master/package.tgz (00:00.072 / 00:23.624, 113Mb) Sushi: info Downloaded hl7.fhir.uv.cpg#current (00:00.024 / 00:23.649, 113Mb) Sushi: info Loaded package hl7.fhir.uv.cpg#current (00:01.541 / 00:25.190, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for ihe.iti.pcf#1.1.0... (00:00.000 / 00:25.190, 113Mb) Sushi: info Did not find ihe.iti.pcf#1.1.0 in /home/fhiruser/.fhir/packages. (00:01.248 / 00:26.439, 113Mb) Sushi: info Downloading ihe.iti.pcf#1.1.0... https://packages.fhir.org/ihe.iti.pcf/1.1.0 (00:00.000 / 00:26.440, 113Mb) Sushi: info Downloaded ihe.iti.pcf#1.1.0 (00:00.918 / 00:27.358, 113Mb) Sushi: info Loaded package ihe.iti.pcf#1.1.0 (00:01.283 / 00:28.641, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:28.641, 113Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:01.330 / 00:29.972, 121Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:29.972, 121Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.530 / 00:32.503, 121Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:03.583 / 00:36.086, 121Mb) Sushi: info Found 6 files in input/* resource folders that were neither XML nor JSON. These files were not processed as resources by SUSHI. To see the unprocessed files in the logs, run SUSHI with the "--log-level debug" flag. (00:00.071 / 00:36.158, 121Mb) Sushi: info Converting FSH to FHIR resources... (00:00.003 / 00:36.161, 121Mb) Sushi: warn The name "HajjIPS-Composition" may not be suitable for machine processing applications such as code generation. Valid names start with an upper-case ASCII letter ('A'..'Z') followed by any combination of upper- or lower-case ASCII letters ('A'..'Z', and 'a'..'z'), numerals ('0'..'9') and '_', with a length limit of 255 characters. (00:00.422 / 00:36.583, 121Mb) Sushi: File: /scratch/repo/input/fsh/profiles/HajjIPS.fsh (00:00.000 / 00:36.584, 121Mb) Sushi: Line: 24 - 30 (00:00.000 / 00:36.584, 121Mb) Sushi: info Converted 6 FHIR StructureDefinitions. (00:00.106 / 00:36.691, 121Mb) Sushi: info Converted 3 FHIR CodeSystems. (00:00.113 / 00:36.805, 121Mb) Sushi: info Converted 3 FHIR ValueSets. (00:00.152 / 00:36.957, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGActor not found for HCEMR (00:00.001 / 00:36.959, 121Mb) Sushi: File: /scratch/repo/input/fsh/actors/HCEMR.fsh (00:00.000 / 00:36.959, 121Mb) Sushi: Line: 1 - 12 (00:00.000 / 00:36.959, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGActor not found for OCHIE (00:00.000 / 00:36.960, 121Mb) Sushi: File: /scratch/repo/input/fsh/actors/OCHIE.fsh (00:00.000 / 00:36.960, 121Mb) Sushi: Line: 1 - 12 (00:00.000 / 00:36.960, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGActor not found for OCHW (00:00.000 / 00:36.961, 121Mb) Sushi: File: /scratch/repo/input/fsh/actors/OCHW.fsh (00:00.000 / 00:36.961, 121Mb) Sushi: Line: 1 - 12 (00:00.000 / 00:36.961, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGActor not found for Pilgrim (00:00.000 / 00:36.961, 121Mb) Sushi: File: /scratch/repo/input/fsh/actors/Pilgrim.fsh (00:00.000 / 00:36.961, 121Mb) Sushi: Line: 1 - 12 (00:00.000 / 00:36.962, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGActor not found for QRCard (00:00.000 / 00:36.962, 121Mb) Sushi: File: /scratch/repo/input/fsh/actors/QRCard.fsh (00:00.000 / 00:36.962, 121Mb) Sushi: Line: 1 - 12 (00:00.000 / 00:36.962, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGActor not found for Scanner (00:00.000 / 00:36.963, 121Mb) Sushi: File: /scratch/repo/input/fsh/actors/Scanner.fsh (00:00.000 / 00:36.963, 121Mb) Sushi: Line: 1 - 12 (00:00.000 / 00:36.963, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for consent-post-counseling (00:02.584 / 00:39.547, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/ConsentPostCounseling.fsh (00:00.000 / 00:39.548, 121Mb) Sushi: Line: 2 - 27 (00:00.000 / 00:39.548, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for consent-wallet (00:00.000 / 00:39.548, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/ConsentWallet.fsh (00:00.000 / 00:39.548, 121Mb) Sushi: Line: 2 - 29 (00:00.000 / 00:39.549, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for keys-get (00:00.000 / 00:39.549, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/GetKeys.fsh (00:00.000 / 00:39.549, 121Mb) Sushi: Line: 2 - 31 (00:00.000 / 00:39.549, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for shl-get-manifest (00:00.000 / 00:39.549, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/IPSManifest.fsh (00:00.000 / 00:39.550, 121Mb) Sushi: Line: 1 - 31 (00:00.000 / 00:39.550, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for shl-doc-view (00:00.000 / 00:39.550, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/IPSView.fsh (00:00.000 / 00:39.550, 121Mb) Sushi: Line: 1 - 26 (00:00.000 / 00:39.551, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for keys-put (00:00.000 / 00:39.551, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/PutKeys.fsh (00:00.000 / 00:39.551, 121Mb) Sushi: Line: 1 - 29 (00:00.000 / 00:39.551, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for doc-sign (00:00.000 / 00:39.551, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/SignIPS.fsh (00:00.000 / 00:39.552, 121Mb) Sushi: Line: 1 - 30 (00:00.000 / 00:39.552, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for shl-sign (00:00.000 / 00:39.552, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/SignSHL.fsh (00:00.000 / 00:39.552, 121Mb) Sushi: Line: 1 - 26 (00:00.000 / 00:39.552, 121Mb) Sushi: error InstanceOf http://smart.who.int/base/StructureDefinition/SGTransactionDefinition not found for doc-get (00:00.000 / 00:39.552, 121Mb) Sushi: File: /scratch/repo/input/fsh/transactions/doc-get.fsh (00:00.000 / 00:39.553, 121Mb) Sushi: Line: 1 - 26 (00:00.000 / 00:39.553, 121Mb) Sushi: info Converted 58 FHIR instances. (00:00.000 / 00:39.553, 121Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:39.553, 121Mb) Sushi: info Exported 35 FHIR resources as JSON. (00:00.127 / 00:39.682, 121Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:39.684, 121Mb) Sushi: info Generated ImplementationGuide-smart.who.int.ips-pilgrimage.json (00:00.047 / 00:39.732, 121Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:39.732, 121Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:39.734, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:39.735, 121Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:39.735, 121Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:39.735, 121Mb) Sushi: | | 4 | 2 | 0 | 0 | | (00:00.000 / 00:39.735, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:39.735, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:39.736, 121Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:39.736, 121Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:39.736, 121Mb) Sushi: | | 3 | 3 | 43 | | (00:00.000 / 00:39.736, 121Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:39.736, 121Mb) Sushi: | | (00:00.000 / 00:39.737, 121Mb) Sushi: =================================================================== (00:00.000 / 00:39.737, 121Mb) Sushi: | You should do some sole searching. 16 Errors 1 Warning | (00:00.000 / 00:39.737, 121Mb) Sushi: =================================================================== (00:00.000 / 00:39.737, 121Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.065 / 00:39.803, 121Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:39.804, 121Mb) Exception: Process exited with an error: 16 (Exit value: 16) (00:00.000 / 00:39.804, 121Mb) Publishing Content Failed: Process exited with an error: 16 (Exit value: 16) (00:00.000 / 00:39.804, 121Mb) (00:00.000 / 00:39.804, 121Mb) Use -? to get command line help (00:00.000 / 00:39.804, 121Mb) (00:00.000 / 00:39.804, 121Mb) Stack Dump (for debugging): (00:00.000 / 00:39.804, 121Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 16 (Exit value: 16) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:2627) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1061) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13703)