INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/WorldHealthOrganization/smart-dak-tb --branch v.1.0.2 repo DEBUG:root:Time to deadline 35879.997862 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35863.120841 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35861.750086 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 128 packages in 5s 11 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.9.0 npm notice Changelog: npm notice Run `npm install -g npm@10.9.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/WorldHealthOrganization/smart-dak-tb/ -out /scratch/repo DEBUG:root:Time to deadline 35856.260797 seconds FHIR IG Publisher Version 1.6.31 (Git# 7c67d403c6fc). Built 2024-10-14T09:16:34.143Z (7 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/WorldHealthOrganization/smart-dak-tb/ -out /scratch/repo Start Clock @ Monday, October 21, 2024, 1:51:40 PM Coordinated Universal Time (2024-10-21T13:51:40Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.028, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.032, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.036, 89Mb) Run Sushi on /scratch/repo (00:00.005 / 00:00.042, 89Mb) Sushi: info Running SUSHI v3.12.0 (implements FHIR Shorthand specification v3.0.0) (00:00.683 / 00:00.725, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.726, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.726, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.727, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.727, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.682 / 00:01.410, 113Mb) Sushi: info Importing FSH text... (00:00.159 / 00:01.570, 113Mb) Sushi: info Preprocessed 3 documents with 10 aliases. (00:00.050 / 00:01.621, 113Mb) Sushi: info Imported 0 definitions and 0 instances. (00:00.000 / 00:01.621, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.005 / 00:01.626, 113Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.033 / 00:01.659, 113Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.122 / 00:01.782, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.016 / 00:01.798, 113Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.102 / 00:01.901, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.0.2... (00:00.675 / 00:02.576, 113Mb) Sushi: info Did not find hl7.terminology.r4#6.0.2 in /home/fhiruser/.fhir/packages. (00:00.033 / 00:02.610, 113Mb) Sushi: info Downloading hl7.terminology.r4#6.0.2... https://packages.fhir.org/hl7.terminology.r4/6.0.2 (00:00.000 / 00:02.610, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.0.2 (00:02.195 / 00:04.805, 113Mb) Sushi: info Loaded package hl7.terminology.r4#6.0.2 (00:02.348 / 00:07.154, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.446 / 00:07.600, 113Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.520 / 00:08.120, 113Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:08.121, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:01.889 / 00:10.010, 113Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.482 / 00:11.493, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for who.base#current... (00:00.000 / 00:11.493, 113Mb) Sushi: info Did not find who.base#current in /home/fhiruser/.fhir/packages. (00:00.742 / 00:12.236, 113Mb) Sushi: error Failed to load who.base#current: The package who.base#current is not available on https://build.fhir.org/ig/qas.json, so no current version can be loaded (00:00.065 / 00:12.302, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:12.302, 113Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.740 / 00:13.043, 113Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:13.044, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.411 / 00:15.455, 113Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:02.982 / 00:18.438, 113Mb) Sushi: info Found 6 files in input/* resource folders that were neither XML nor JSON. These files were not processed as resources by SUSHI. To see the unprocessed files in the logs, run SUSHI with the "--log-level debug" flag. (00:00.059 / 00:18.497, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.001 / 00:18.499, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.006 / 00:18.505, 113Mb) Sushi: info Exported 0 FHIR resources as JSON. (00:00.000 / 00:18.505, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:18.507, 113Mb) Sushi: info Generated ImplementationGuide-smart.who.int.dak-tb.json (00:00.043 / 00:18.551, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:18.551, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:18.553, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.553, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:18.553, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:18.553, 113Mb) Sushi: | | 0 | 0 | 0 | 0 | | (00:00.000 / 00:18.553, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.554, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.554, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:18.554, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:18.554, 113Mb) Sushi: | | 0 | 0 | 0 | | (00:00.000 / 00:18.554, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:18.555, 113Mb) Sushi: | | (00:00.000 / 00:18.555, 113Mb) Sushi: =================================================================== (00:00.000 / 00:18.555, 113Mb) Sushi: | Don't be shell-shocked. 1 Error 0 Warnings | (00:00.000 / 00:18.555, 113Mb) Sushi: =================================================================== (00:00.000 / 00:18.556, 113Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.050 / 00:18.606, 113Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:18.607, 113Mb) Exception: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:18.607, 113Mb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:18.607, 113Mb) (00:00.000 / 00:18.607, 113Mb) Use -? to get command line help (00:00.000 / 00:18.608, 113Mb) (00:00.000 / 00:18.608, 113Mb) Stack Dump (for debugging): (00:00.000 / 00:18.608, 113Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:2626) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1060) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13615)