WHO Digital Documentation of COVID-19 Certificates (DDCC)
1.0.0 - CI Build
WHO Digital Documentation of COVID-19 Certificates (DDCC)
1.0.0 - CI Build
WHO Digital Documentation of COVID-19 Certificates (DDCC), published by WHO. This guide is not an authorized publication; it is the continuous build for version 1.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/WorldHealthOrganization/ddcc/ and changes regularly. See the Directory of published versions
| Draft as of 2024-10-17 |
<StructureMap xmlns="http://hl7.org/fhir">
<id value="SHCToCoreDataSetTR"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: StructureMap SHCToCoreDataSetTR</b></p><a name="SHCToCoreDataSetTR"> </a><a name="hcSHCToCoreDataSetTR"> </a><a name="SHCToCoreDataSetTR-en-US"> </a><pre class="fml">
<b>map</b><span style="color: navy"> "</span>http://smart.who.int/ddcc/StructureMap/SHCToCoreDataSetTR<span style="color: navy">" = "</span>SHCToCoreDataSetTR<span style="color: navy">"
</span><b>uses</b><span style="color: navy"> "</span>http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-infectious-disease-laboratory-bundle-dm<span style="color: navy">" </span><b>alias </b>SHCLabBundleDM <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span>http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-patient-general-dm<span style="color: navy">" </span><b>alias </b>SHCPatientDM <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span>http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-infectious-disease-laboratory-result-observation-dm<span style="color: navy">" </span><b>alias </b>SHCLabDM <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R4/bundle.html" title="Bundle">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style="color: navy">" </span><b>alias </b>DDCCBundle <b>as </b><b>target</b>
<b>uses</b><span style="color: navy"> "</span><a href="StructureDefinition-DDCCCoreDataSetTR.html" title="DDCC Core Data Set Logical Model for Test Result">http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR</a><span style="color: navy">" </span><b>alias </b>DDCCTR <b>as </b><b>target</b>
<b>group </b>SHCToTR<span style="color: navy">(</span><b>source</b> <span style="color: maroon">shc</span><span style="color: navy"> : </span>SHCLabBundleDM, <b>target</b> <span style="color: maroon">ddccBundle</span><span style="color: navy"> : </span>DDCCBundle<span style="color: navy">)</span><span style="color: navy"> {
</span> shc.entry<b> as </b><span style="color: maroon">patientEntrySHC</span><b> then</b><span style="color: navy"> {
</span> patientEntrySHC.resource<span style="color: navy"> : </span>Patient first<b> as </b><span style="color: maroon">patient</span><b> then</b><span style="color: navy"> {
</span> shc.entry<b> as </b><span style="color: maroon">entry</span><b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">entry.resource : Immunization as immunization where vaccineCode.memberOf('http://smart.who.int/ddcc/ValueSet/who-ddcc-allowed-vaccines-covid-19') -> ddccBundle.entry as outentry, create('http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetVS') as ddcc then {</span>
entry.resource<span style="color: navy"> : </span>Observation<b> as </b><span style="color: maroon">lab</span><span style="color: navy"><b> -> </b></span> ddccBundle.entry<b> as </b><span style="color: maroon">outentry</span><span style="color: navy">, </span> <b>create</b><span style="color: navy">(</span><span style="color: blue">'http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ddcc</span><b> then</b><span style="color: navy"> {
</span> lab<b> then </b>PatientToDDCCTR<span style="color: navy">(</span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">ddcc</span><span style="color: navy">)</span> <i>"set patient"</i><span style="color: navy">;</span>
lab<span style="color: navy"><b> -> </b></span>ddcc.test<b> as </b><span style="color: maroon">test</span><b> then </b>LabToDDCC<span style="color: navy">(</span><span style="color: maroon">lab</span><span style="color: navy">, </span><span style="color: maroon">test</span><span style="color: navy">)</span> <i>"set test"</i><span style="color: navy">;</span>
lab<span style="color: navy"><b> -> </b></span>outentry.resource = <span style="color: maroon">ddcc</span> <i>"set outentry"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"labs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"entries"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"get patient"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"find patient"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>PatientToDDCCTR<span style="color: navy">(</span><b>source</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>SHCPatientDM, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy"> : </span>DDCCTR<span style="color: navy">)</span><span style="color: navy"> {
</span> patient.name<b> as </b><span style="color: maroon">name</span><b> then </b>NameToText<span style="color: navy">(</span><span style="color: maroon">name</span><span style="color: navy">, </span><span style="color: maroon">tgt</span><span style="color: navy">)</span> <i>"set name"</i><span style="color: navy">;</span>
patient.birthDate<b> as </b><span style="color: maroon">birthDate</span><span style="color: navy"><b> -> </b></span>tgt.birthDate = <span style="color: maroon">birthDate</span> <i>"set birthDate"</i><span style="color: navy">;</span>
patient.identifier first<b> as </b><span style="color: maroon">identifier</span><span style="color: navy"><b> -> </b></span>tgt.identifier = <span style="color: maroon">identifier</span> <i>"set identifier"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>NameToText<span style="color: navy">(</span><b>source</b> <span style="color: maroon">name</span><span style="color: navy"> : </span>HumanName, <b>target</b> <span style="color: maroon">ddcc</span><span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">append doesn't work until ddcc.name is set</span>
name.given first<b> as </b><span style="color: maroon">given</span><span style="color: navy"><b> -> </b></span>ddcc.name = <span style="color: navy">(</span>given.replaceMatches('$', ' ')<span style="color: navy">)</span> <i>"set first name"</i><span style="color: navy">;</span>
<span style="color: #b36b00" title="This element was not defined prior to R5">// name.given not_first as other -> ddcc.name as tName, ddcc.name = append( tName, other ) "set other names";</span>
name.given not_first<b> as </b><span style="color: maroon">other</span><span style="color: navy"><b> -> </b></span> ddcc.name<b> as </b><span style="color: maroon">tName</span><span style="color: navy">, </span> <span style="color: navy">(</span>other.replaceMatches('$', ' ')<span style="color: navy">)</span><b> as </b><span style="color: maroon">spaced</span><span style="color: navy">, </span> ddcc.name = <b>append</b><span style="color: navy">(</span><span style="color: maroon">tName</span><span style="color: navy">, </span><span style="color: maroon">spaced</span><span style="color: navy">)</span> <i>"set other names"</i><span style="color: navy">;</span>
name.family<b> as </b><span style="color: maroon">family</span><span style="color: navy"><b> -> </b></span> ddcc.name<b> as </b><span style="color: maroon">tName</span><span style="color: navy">, </span> ddcc.name = <b>append</b><span style="color: navy">(</span><span style="color: maroon">tName</span><span style="color: navy">, </span><span style="color: maroon">family</span><span style="color: navy">)</span> <i>"add family name"</i><span style="color: navy">;</span>
name.text<b> as </b><span style="color: maroon">text</span><span style="color: navy"><b> -> </b></span>ddcc.name = <span style="color: maroon">text</span> <i>"set full name"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>LabToDDCC<span style="color: navy">(</span><b>source</b> <span style="color: maroon">lab</span><span style="color: navy"> : </span>SHCLabDM, <b>target</b> <span style="color: maroon">test</span><span style="color: navy">)</span><span style="color: navy"> {
</span> lab.code<b> as </b><span style="color: maroon">code</span><b> then</b><span style="color: navy"> {
</span> code.coding first<b> as </b><span style="color: maroon">labType</span><b> then</b><span style="color: navy"> {
</span> labType<span style="color: navy"><b> -> </b></span>test.type = <span style="color: maroon">labType</span> <i>"set default type"</i><span style="color: navy">;</span>
labType<b> where </b>labType.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc')<span style="color: navy"><b> -> </b></span>test.type = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">labType</span><span style="color: navy">, </span><span style="color: blue">'http://smart.who.int/ddcc/ConceptMap/lab-test-type-covid19-loinc-to-icd11'</span><span style="color: navy">, </span><span style="color: blue">'Coding'</span><span style="color: navy">)</span> <i>"translate loinc type"</i><span style="color: navy">;</span>
labType<b> where </b>labType.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc')<span style="color: navy"><b> -> </b></span>test.pathogen = <b>c</b><span style="color: navy">(</span><span style="color: blue">'http://id.who.int/icd11/mms'</span><span style="color: navy">, </span><span style="color: blue">'XN109'</span><span style="color: navy">)</span> <i>"set pathogen to COVID"</i><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
lab.effectiveDateTime<b> as </b><span style="color: maroon">date</span><span style="color: navy"><b> -> </b></span>test.date = <span style="color: maroon">date</span> <i>"set date"</i><span style="color: navy">;</span>
lab.valueCodeableConcept<b> as </b><span style="color: maroon">value</span><b> then</b><span style="color: navy"> {
</span> value.coding first<b> as </b><span style="color: maroon">result</span><b> then</b><span style="color: navy"> {
</span> result<span style="color: navy"><b> -> </b></span>test.result = <span style="color: maroon">result</span> <i>"set default result"</i><span style="color: navy">;</span>
result<b> where </b>result.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-qual-result-snomed')<span style="color: navy"><b> -> </b></span>test.result = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">result</span><span style="color: navy">, </span><span style="color: blue">'http://smart.who.int/ddcc/ConceptMap/lab-test-qual-result-snomed-to-icd11'</span><span style="color: navy">)</span> <i>"translate snomed result"</i><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">no target for result valueQuantity (for Ab titers) or valueString (for unmapped text)</span>
<span style="color: navy">// </span><span style="color: green">pathogen and country are required, no source in SHC</span>
<span style="color: navy">}
</span></pre></div>
</text>
<url value="http://smart.who.int/ddcc/StructureMap/SHCToCoreDataSetTR"/>
<version value="1.0.0"/>
<name value="SHCToCoreDataSetTR"/>
<status value="draft"/>
<date value="2024-10-17T05:03:04+00:00"/>
<publisher value="WHO"/>
<contact>
<name value="WHO"/>
<telecom>
<system value="url"/>
<value value="http://who.int"/>
</telecom>
</contact>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
</coding>
</jurisdiction>
<structure>
<url
value="http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-infectious-disease-laboratory-bundle-dm"/>
<mode value="source"/>
<alias value="SHCLabBundleDM"/>
</structure>
<structure>
<url
value="http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-patient-general-dm"/>
<mode value="source"/>
<alias value="SHCPatientDM"/>
</structure>
<structure>
<url
value="http://hl7.org/fhir/uv/shc-vaccination/StructureDefinition/shc-infectious-disease-laboratory-result-observation-dm"/>
<mode value="source"/>
<alias value="SHCLabDM"/>
</structure>
<structure>
<url value="http://hl7.org/fhir/StructureDefinition/Bundle"/>
<mode value="target"/>
<alias value="DDCCBundle"/>
</structure>
<structure>
<url
value="http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR"/>
<mode value="target"/>
<alias value="DDCCTR"/>
</structure>
<group>
<name value="SHCToTR"/>
<typeMode value="none"/>
<input>
<name value="shc"/>
<type value="SHCLabBundleDM"/>
<mode value="source"/>
</input>
<input>
<name value="ddccBundle"/>
<type value="DDCCBundle"/>
<mode value="target"/>
</input>
<rule>
<name value="find patient"/>
<source>
<context value="shc"/>
<element value="entry"/>
<variable value="patientEntrySHC"/>
</source>
<rule>
<name value="get patient"/>
<source>
<context value="patientEntrySHC"/>
<type value="Patient"/>
<element value="resource"/>
<listMode value="first"/>
<variable value="patient"/>
</source>
<rule>
<name value="entries"/>
<source>
<context value="shc"/>
<element value="entry"/>
<variable value="entry"/>
</source>
<rule>
<name value="labs"/>
<source>
<context value="entry"/>
<type value="Observation"/>
<element value="resource"/>
<variable value="lab"/>
</source>
<target>
<context value="ddccBundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="outentry"/>
</target>
<target>
<contextType value="variable"/>
<variable value="ddcc"/>
<transform value="create"/>
<parameter>
<valueString
value="http://smart.who.int/ddcc/StructureDefinition/DDCCCoreDataSetTR"/>
</parameter>
</target>
<rule>
<name value="set patient"/>
<source>
<context value="lab"/>
</source>
<dependent>
<name value="PatientToDDCCTR"/>
<variable value="patient"/>
<variable value="ddcc"/>
</dependent>
</rule>
<rule>
<name value="set test"/>
<source>
<context value="lab"/>
</source>
<target>
<context value="ddcc"/>
<contextType value="variable"/>
<element value="test"/>
<variable value="test"/>
</target>
<dependent>
<name value="LabToDDCC"/>
<variable value="lab"/>
<variable value="test"/>
</dependent>
</rule>
<rule>
<name value="set outentry"/>
<source>
<context value="lab"/>
</source>
<target>
<context value="outentry"/>
<contextType value="variable"/>
<element value="resource"/>
<transform value="copy"/>
<parameter>
<valueId value="ddcc"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</rule>
</group>
<group>
<name value="PatientToDDCCTR"/>
<typeMode value="none"/>
<input>
<name value="patient"/>
<type value="SHCPatientDM"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<type value="DDCCTR"/>
<mode value="target"/>
</input>
<rule>
<name value="set name"/>
<source>
<context value="patient"/>
<element value="name"/>
<variable value="name"/>
</source>
<dependent>
<name value="NameToText"/>
<variable value="name"/>
<variable value="tgt"/>
</dependent>
</rule>
<rule>
<name value="set birthDate"/>
<source>
<context value="patient"/>
<element value="birthDate"/>
<variable value="birthDate"/>
</source>
<target>
<context value="tgt"/>
<contextType value="variable"/>
<element value="birthDate"/>
<transform value="copy"/>
<parameter>
<valueId value="birthDate"/>
</parameter>
</target>
</rule>
<rule>
<name value="set identifier"/>
<source>
<context value="patient"/>
<element value="identifier"/>
<listMode value="first"/>
<variable value="identifier"/>
</source>
<target>
<context value="tgt"/>
<contextType value="variable"/>
<element value="identifier"/>
<transform value="copy"/>
<parameter>
<valueId value="identifier"/>
</parameter>
</target>
</rule>
</group>
<group>
<name value="NameToText"/>
<typeMode value="none"/>
<input>
<name value="name"/>
<type value="HumanName"/>
<mode value="source"/>
</input>
<input>
<name value="ddcc"/>
<mode value="target"/>
</input>
<rule>
<name value="set first name"/>
<source>
<context value="name"/>
<element value="given"/>
<listMode value="first"/>
<variable value="given"/>
</source>
<target>
<context value="ddcc"/>
<contextType value="variable"/>
<element value="name"/>
<transform value="evaluate"/>
<parameter>
<valueString value="given.replaceMatches('$', ' ')"/>
</parameter>
</target>
</rule>
<rule>
<name value="set other names"/>
<source>
<context value="name"/>
<element value="given"/>
<listMode value="not_first"/>
<variable value="other"/>
</source>
<target>
<context value="ddcc"/>
<contextType value="variable"/>
<element value="name"/>
<variable value="tName"/>
</target>
<target>
<contextType value="variable"/>
<variable value="spaced"/>
<transform value="evaluate"/>
<parameter>
<valueString value="other.replaceMatches('$', ' ')"/>
</parameter>
</target>
<target>
<context value="ddcc"/>
<contextType value="variable"/>
<element value="name"/>
<transform value="append"/>
<parameter>
<valueId value="tName"/>
</parameter>
<parameter>
<valueId value="spaced"/>
</parameter>
</target>
</rule>
<rule>
<name value="add family name"/>
<source>
<context value="name"/>
<element value="family"/>
<variable value="family"/>
</source>
<target>
<context value="ddcc"/>
<contextType value="variable"/>
<element value="name"/>
<variable value="tName"/>
</target>
<target>
<context value="ddcc"/>
<contextType value="variable"/>
<element value="name"/>
<transform value="append"/>
<parameter>
<valueId value="tName"/>
</parameter>
<parameter>
<valueId value="family"/>
</parameter>
</target>
</rule>
<rule>
<name value="set full name"/>
<source>
<context value="name"/>
<element value="text"/>
<variable value="text"/>
</source>
<target>
<context value="ddcc"/>
<contextType value="variable"/>
<element value="name"/>
<transform value="copy"/>
<parameter>
<valueId value="text"/>
</parameter>
</target>
</rule>
</group>
<group>
<name value="LabToDDCC"/>
<typeMode value="none"/>
<input>
<name value="lab"/>
<type value="SHCLabDM"/>
<mode value="source"/>
</input>
<input>
<name value="test"/>
<mode value="target"/>
</input>
<rule>
<name value="code"/>
<source>
<context value="lab"/>
<element value="code"/>
<variable value="code"/>
</source>
<rule>
<name value="coding"/>
<source>
<context value="code"/>
<element value="coding"/>
<listMode value="first"/>
<variable value="labType"/>
</source>
<rule>
<name value="set default type"/>
<source>
<context value="labType"/>
</source>
<target>
<context value="test"/>
<contextType value="variable"/>
<element value="type"/>
<transform value="copy"/>
<parameter>
<valueId value="labType"/>
</parameter>
</target>
</rule>
<rule>
<name value="translate loinc type"/>
<source>
<context value="labType"/>
<condition
value="labType.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc')"/>
</source>
<target>
<context value="test"/>
<contextType value="variable"/>
<element value="type"/>
<transform value="translate"/>
<parameter>
<valueId value="labType"/>
</parameter>
<parameter>
<valueString
value="http://smart.who.int/ddcc/ConceptMap/lab-test-type-covid19-loinc-to-icd11"/>
</parameter>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
</rule>
<rule>
<name value="set pathogen to COVID"/>
<source>
<context value="labType"/>
<condition
value="labType.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-type-covid19-loinc')"/>
</source>
<target>
<context value="test"/>
<contextType value="variable"/>
<element value="pathogen"/>
<transform value="c"/>
<parameter>
<valueString value="http://id.who.int/icd11/mms"/>
</parameter>
<parameter>
<valueString value="XN109"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="set date"/>
<source>
<context value="lab"/>
<element value="effectiveDateTime"/>
<variable value="date"/>
</source>
<target>
<context value="test"/>
<contextType value="variable"/>
<element value="date"/>
<transform value="copy"/>
<parameter>
<valueId value="date"/>
</parameter>
</target>
</rule>
<rule>
<name value="valueCodeableConcept"/>
<source>
<context value="lab"/>
<element value="valueCodeableConcept"/>
<variable value="value"/>
</source>
<rule>
<name value="coding"/>
<source>
<context value="value"/>
<element value="coding"/>
<listMode value="first"/>
<variable value="result"/>
</source>
<rule>
<name value="set default result"/>
<source>
<context value="result"/>
</source>
<target>
<context value="test"/>
<contextType value="variable"/>
<element value="result"/>
<transform value="copy"/>
<parameter>
<valueId value="result"/>
</parameter>
</target>
</rule>
<rule>
<name value="translate snomed result"/>
<source>
<context value="result"/>
<condition
value="result.memberOf('http://smart.who.int/ddcc/ValueSet/lab-test-qual-result-snomed')"/>
</source>
<target>
<context value="test"/>
<contextType value="variable"/>
<element value="result"/>
<transform value="translate"/>
<parameter>
<valueId value="result"/>
</parameter>
<parameter>
<valueString
value="http://smart.who.int/ddcc/ConceptMap/lab-test-qual-result-snomed-to-icd11"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</group>
</StructureMap>