INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/Wangui234/Starter-FHIR-IG --branch first-profile repo DEBUG:root:Time to deadline 35879.997988 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.681295 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.411415 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 120 packages in 5s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.8.3 npm notice Changelog: npm notice Run `npm install -g npm@10.8.3` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/Wangui234/Starter-FHIR-IG/ -out /scratch/repo DEBUG:root:Time to deadline 35873.17359 seconds FHIR IG Publisher Version 1.6.27 (Git# d4b1190dcc36). Built 2024-09-25T22:48:07.670Z (13 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/Wangui234/Starter-FHIR-IG/ -out /scratch/repo Start Clock @ Thursday, September 26, 2024, 12:12:57 PM Coordinated Universal Time (2024-09-26T12:12:57Z) Build FHIR IG from /scratch/repo (00:00.029 / 00:00.029, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.033, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.036, 89Mb) Run Sushi on /scratch/repo (00:00.005 / 00:00.042, 89Mb) Sushi: info Running SUSHI v3.11.1 (implements FHIR Shorthand specification v3.0.0-ballot) (00:00.652 / 00:00.695, 97Mb) Sushi: info Arguments: (00:00.000 / 00:00.695, 97Mb) Sushi: info --require-latest (00:00.000 / 00:00.695, 97Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.696, 97Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.696, 97Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.694 / 00:01.391, 97Mb) Sushi: info Importing FSH text... (00:00.161 / 00:01.552, 97Mb) Sushi: info Preprocessed 6 documents with 0 aliases. (00:00.104 / 00:01.657, 97Mb) Sushi: info Imported 2 definitions and 1 instances. (00:00.008 / 00:01.666, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:01.668, 97Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.028 / 00:01.696, 97Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.121 / 00:01.817, 97Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.013 / 00:01.831, 97Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.103 / 00:01.935, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.0.2... (00:00.480 / 00:02.415, 97Mb) Sushi: info Did not find hl7.terminology.r4#6.0.2 in /home/fhiruser/.fhir/packages. (00:00.036 / 00:02.451, 97Mb) Sushi: info Downloading hl7.terminology.r4#6.0.2... https://packages.fhir.org/hl7.terminology.r4/6.0.2 (00:00.000 / 00:02.452, 97Mb) Sushi: info Downloaded hl7.terminology.r4#6.0.2 (00:02.010 / 00:04.462, 97Mb) Sushi: info Loaded package hl7.terminology.r4#6.0.2 (00:02.173 / 00:06.636, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.426 / 00:07.063, 97Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.519 / 00:07.582, 97Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:07.583, 97Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:01.798 / 00:09.382, 97Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.414 / 00:10.796, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.ips#1.1.0... (00:00.000 / 00:10.797, 97Mb) Sushi: info Did not find hl7.fhir.uv.ips#1.1.0 in /home/fhiruser/.fhir/packages. (00:00.730 / 00:11.527, 97Mb) Sushi: info Downloading hl7.fhir.uv.ips#1.1.0... https://packages.fhir.org/hl7.fhir.uv.ips/1.1.0 (00:00.000 / 00:11.528, 97Mb) Sushi: info Downloaded hl7.fhir.uv.ips#1.1.0 (00:01.391 / 00:12.919, 97Mb) Sushi: info Loaded package hl7.fhir.uv.ips#1.1.0 (00:00.958 / 00:13.877, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:13.878, 97Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.891 / 00:14.769, 97Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:14.770, 97Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.665 / 00:17.435, 97Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:02.966 / 00:20.401, 97Mb) Sushi: info Found 6 files in input/* resource folders that were neither XML nor JSON. These files were not processed as resources by SUSHI. To see the unprocessed files in the logs, run SUSHI with the "--log-level debug" flag. (00:00.069 / 00:20.471, 97Mb) Sushi: info Converting FSH to FHIR resources... (00:00.003 / 00:20.474, 97Mb) Sushi: error Resolved value "KeyPopulationStatusValueSet" is not a valid URI. (00:00.166 / 00:20.640, 97Mb) Sushi: File: /scratch/repo/input/fsh/profiles.fsh (00:00.000 / 00:20.641, 97Mb) Sushi: Line: 41 (00:00.000 / 00:20.641, 97Mb) Sushi: info Converted 2 FHIR StructureDefinitions. (00:00.060 / 00:20.702, 97Mb) Sushi: info Converted 1 FHIR instances. (00:00.133 / 00:20.836, 97Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:20.836, 97Mb) Sushi: info Exported 3 FHIR resources as JSON. (00:00.021 / 00:20.857, 97Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:20.860, 97Mb) Sushi: info Generated ImplementationGuide-kenya-training-grace.json (00:00.035 / 00:20.895, 97Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:20.896, 97Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 00:20.898, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:20.898, 97Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:20.898, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:20.899, 97Mb) Sushi: | | 1 | 1 | 0 | 0 | | (00:00.000 / 00:20.899, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:20.899, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:20.900, 97Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:20.900, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:20.900, 97Mb) Sushi: | | 0 | 0 | 1 | | (00:00.000 / 00:20.900, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:20.900, 97Mb) Sushi: | | (00:00.000 / 00:20.901, 97Mb) Sushi: =================================================================== (00:00.000 / 00:20.901, 97Mb) Sushi: | You've spawned some errors. 1 Error 0 Warnings | (00:00.000 / 00:20.901, 97Mb) Sushi: =================================================================== (00:00.000 / 00:20.901, 97Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.047 / 00:20.949, 97Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:20.949, 97Mb) Exception: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:20.949, 97Mb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:20.949, 97Mb) (00:00.000 / 00:20.950, 97Mb) Use -? to get command line help (00:00.000 / 00:20.950, 97Mb) (00:00.000 / 00:20.950, 97Mb) Stack Dump (for debugging): (00:00.000 / 00:20.950, 97Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:2600) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1039) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13301)