INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/TEHIK-EE/TerminologyServices --branch master repo DEBUG:root:Time to deadline 35879.997501 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.379544 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.109553 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/TEHIK-EE/TerminologyServices/ -out /scratch/repo DEBUG:root:Time to deadline 35872.067477 seconds FHIR IG Publisher Version 2.0.26 (Git# 0a43ac207d1f). Built 2025-11-06T09:21:35.314Z (4 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/TEHIK-EE/TerminologyServices/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Monday, November 10, 2025, 5:19:07 PM Coordinated Universal Time (2025-11-10T17:19:07Z) Build FHIR IG from /scratch/repo (00:00.023 / 00:00.024, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.026, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.029, 97Mb) Run Sushi on /scratch/repo (00:00.004 / 00:00.033, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.560 / 00:00.594, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.595, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.595, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.595, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.596, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.583 / 00:01.179, 113Mb) Sushi: info Importing FSH text... (00:00.114 / 00:01.294, 113Mb) Sushi: info Preprocessed 9 documents with 4 aliases. (00:00.176 / 00:01.470, 113Mb) Sushi: info Imported 10 definitions and 2 instances. (00:00.018 / 00:01.488, 113Mb) Sushi: warn Detected FSH entity definitions with duplicate names. While FSH allows for duplicate names across entity types, they can lead to ambiguous results when referring to these entities by name elsewhere (e.g., in references). Consider using unique names in FSH declarations and assigning duplicated names using caret assignment rules instead. Detected duplicate names: TerminologyIdentifierType. (00:00.005 / 00:01.493, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r5#latest to concrete version 0.8.0 (00:00.685 / 00:02.179, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r5#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r5/0.8.0 (00:00.001 / 00:02.180, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r5#0.8.0 (00:00.934 / 00:03.115, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r5#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r5#0.8.0 (00:00.002 / 00:03.118, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r5#0.8.0 with 107 resources (00:00.068 / 00:03.186, 113Mb) Sushi: info Resolved hl7.terminology.r5#latest to concrete version 6.5.0 (00:00.471 / 00:03.658, 113Mb) Sushi: info Attempting to download hl7.terminology.r5#6.5.0 from https://packages.fhir.org/hl7.terminology.r5/6.5.0 (00:00.000 / 00:03.658, 113Mb) Sushi: info Downloaded hl7.terminology.r5#6.5.0 (00:02.877 / 00:06.536, 113Mb) Sushi: info Cached hl7.terminology.r5#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r5#6.5.0 (00:00.001 / 00:06.538, 113Mb) Sushi: info Loaded hl7.terminology.r5#6.5.0 with 4392 resources (00:01.231 / 00:07.770, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r5#latest to concrete version 5.2.0 (00:00.495 / 00:08.265, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r5#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r5/5.2.0 (00:00.000 / 00:08.265, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r5#5.2.0 (00:01.465 / 00:09.731, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r5#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r5#5.2.0 (00:00.001 / 00:09.732, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r5#5.2.0 with 759 resources (00:00.214 / 00:09.947, 113Mb) Sushi: info Attempting to download hl7.fhir.r5.core#5.0.0 from https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.000 / 00:09.948, 113Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:03.603 / 00:13.551, 113Mb) Sushi: info Cached hl7.fhir.r5.core#5.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.r5.core#5.0.0 (00:00.000 / 00:13.552, 113Mb) Sushi: info Loaded hl7.fhir.r5.core#5.0.0 with 2968 resources (00:00.921 / 00:14.473, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.008 / 00:14.482, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.483, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.483, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.483, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.483, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:14.483, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:14.484, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.015 / 00:14.499, 113Mb) Sushi: info Converted 5 FHIR StructureDefinitions. (00:01.211 / 00:15.711, 113Mb) Sushi: info Converted 3 FHIR CodeSystems. (00:00.222 / 00:15.934, 113Mb) Sushi: info Converted 2 FHIR ValueSets. (00:00.171 / 00:16.105, 113Mb) Sushi: info Converted 2 FHIR instances. (00:00.473 / 00:16.579, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:16.579, 113Mb) Sushi: info Exported 12 FHIR resources as JSON. (00:00.036 / 00:16.616, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:16.617, 113Mb) Sushi: info Generated ImplementationGuide-ee.fhir.ts.json (00:00.008 / 00:16.626, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:16.626, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:16.628, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.628, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:16.628, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:16.628, 113Mb) Sushi: | | 2 | 2 | 1 | 0 | | (00:00.000 / 00:16.629, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.629, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.629, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:16.629, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:16.630, 113Mb) Sushi: | | 2 | 3 | 2 | | (00:00.000 / 00:16.630, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.630, 113Mb) Sushi: | | (00:00.000 / 00:16.630, 113Mb) Sushi: =================================================================== (00:00.000 / 00:16.630, 113Mb) Sushi: | A bit pitchy, but tuna-ble. 0 Errors 1 Warning | (00:00.000 / 00:16.630, 113Mb) Sushi: =================================================================== (00:00.000 / 00:16.631, 113Mb) Root directory: /scratch/repo (00:00.028 / 00:16.659, 113Mb) Load Template from #local-template (00:00.510 / 00:17.169, 37Mb) Load Template from fhir.base.template#current (00:00.009 / 00:17.178, 37Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.458 / 00:21.637, 156Mb) Core Package hl7.fhir.r5.core#5.0.0 (00:00.000 / 00:21.637, 156Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-12537733937956504192.html Connect to Terminology Server at http://tx.fhir.org (00:04.970 / 00:26.607, 345Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r5#6.5.0 Load Package hl7.fhir.uv.extensions.r5#5.2.0 Load Package hl7.fhir.uv.tools.r5#0.8.0 Initialization complete (00:04.167 / 00:30.775, 1Gb) Load IG (00:00.000 / 00:30.775, 1Gb) Load Content (00:00.002 / 00:30.778, 1Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.048 / 00:30.827, 1Gb) Process Loaded Resources (00:00.536 / 00:31.363, 1Gb) Generating Snapshots (00:00.090 / 00:31.453, 1Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch https://fhir.ee/package-list.json for version check (00:00.328 / 00:31.781, 1Gb) Checking Language (00:00.507 / 00:32.289, 1Gb) Load Dependency Info (00:00.001 / 00:32.290, 1Gb) Load Info (00:00.001 / 00:32.292, 1Gb) Load Paths (00:00.000 / 00:32.292, 1Gb) Check R4 / R4B (00:00.000 / 00:32.292, 1Gb) Assign Comparison Ids (00:00.016 / 00:32.309, 1Gb) Propagating status (00:00.000 / 00:32.309, 1Gb) Generating Narratives (00:00.000 / 00:32.310, 1Gb) Publishing Content Failed: Cannot invoke "String.equals(Object)" because the return value of "org.hl7.fhir.r5.model.CodeSystem$PropertyComponent.getUri()" is null (00:01.124 / 00:33.434, 640Mb) (00:00.000 / 00:33.434, 640Mb) Use -? to get command line help (00:00.000 / 00:33.434, 640Mb) (00:00.000 / 00:33.434, 640Mb) Stack Dump (for debugging): (00:00.000 / 00:33.434, 640Mb) java.lang.NullPointerException: Cannot invoke "String.equals(Object)" because the return value of "org.hl7.fhir.r5.model.CodeSystem$PropertyComponent.getUri()" is null at org.hl7.fhir.r5.terminologies.CodeSystemUtilities.defineProperty(CodeSystemUtilities.java:914) at org.hl7.fhir.r5.terminologies.CodeSystemUtilities.mergeSupplements(CodeSystemUtilities.java:870) at org.hl7.fhir.r5.terminologies.CodeSystemUtilities.mergeSupplements(CodeSystemUtilities.java:851) at org.hl7.fhir.r5.context.BaseWorkerContext.fetchSupplementedCodeSystem(BaseWorkerContext.java:850) at org.hl7.fhir.r5.renderers.ValueSetRenderer.getFetchedCodeSystem(ValueSetRenderer.java:882) at org.hl7.fhir.r5.renderers.ValueSetRenderer.addCodeToTable(ValueSetRenderer.java:1189) at org.hl7.fhir.r5.renderers.ValueSetRenderer.renderConcept(ValueSetRenderer.java:1606) at org.hl7.fhir.r5.renderers.ValueSetRenderer.genInclude(ValueSetRenderer.java:1494) at org.hl7.fhir.r5.renderers.ValueSetRenderer.generateComposition(ValueSetRenderer.java:1254) at org.hl7.fhir.r5.renderers.ValueSetRenderer.buildNarrative(ValueSetRenderer.java:144) at org.hl7.fhir.r5.renderers.ResourceRenderer.renderResource(ResourceRenderer.java:154) at org.hl7.fhir.igtools.publisher.PublisherProcessor.generateNarratives(PublisherProcessor.java:1245) at org.hl7.fhir.igtools.publisher.PublisherProcessor.loadConformance2(PublisherProcessor.java:95) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:403) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:232) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1579)