{ "resourceType" : "StructureMap", "id" : "MeaslesLabResultsMap", "text" : { "status" : "generated", "div" : "

Generated Narrative: StructureMap MeaslesLabResultsMap

\r\nmap "http://example.org/StructureMap/MeaslesLabResultsMap" = "MeaslesLabResultsMap"\r\n\r\n// Measles Lab Results QuestionnaireResponse to FHIR resources\r\n// Maps to: Observation (Measles IgM), Observation (Rubella IgM), DiagnosticReport\r\n\r\nuses "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse" alias QuestionnaireResponse as source\r\nuses "http://hl7.org/fhir/StructureDefinition/Bundle" alias Bundle as target\r\nuses "http://hl7.org/fhir/StructureDefinition/Observation" alias Observation as target\r\nuses "http://hl7.org/fhir/StructureDefinition/DiagnosticReport" alias DiagnosticReport as target\r\n\r\ngroup MeaslesLabResultsMap(source src : QuestionnaireResponse, target bundle : Bundle) {\r\n  src -> bundle.id = uuid() "bundleId";\r\n  src -> bundle.type = 'transaction' "bundleType";\r\n  // Measles IgM Observation\r\n  src -> bundle.entry as e then {\r\n    src -> e.resource = create('Observation') as measlesObs then MapMeaslesIgM(src, measlesObs) "execMeaslesIgM";\r\n    src ->  e.request as req,  req.method = 'POST',  req.url = 'Observation' "measlesObsReq";\r\n  } "measlesIgMEntry";\r\n  // Rubella IgM Observation\r\n  src -> bundle.entry as e then {\r\n    src -> e.resource = create('Observation') as rubellaObs then MapRubellaIgM(src, rubellaObs) "execRubellaIgM";\r\n    src ->  e.request as req,  req.method = 'POST',  req.url = 'Observation' "rubellaObsReq";\r\n  } "rubellaIgMEntry";\r\n  // DiagnosticReport\r\n  src -> bundle.entry as e then {\r\n    src -> e.resource = create('DiagnosticReport') as report then MapLabDiagnosticReport(src, report) "execReport";\r\n    src ->  e.request as req,  req.method = 'POST',  req.url = 'DiagnosticReport' "reportReq";\r\n  } "diagnosticReportEntry";\r\n}\r\n\r\ngroup MapMeaslesIgM(source src : QuestionnaireResponse, target obs : Observation) {\r\n  src -> obs.id = uuid() "obsId";\r\n  src -> obs.status = 'final' "status";\r\n  // LOINC code for Measles virus IgM Ab in Serum\r\n  src -> obs.code as code then {\r\n    src -> code.coding as coding then {\r\n      src -> coding.system = 'http://loinc.org' "loincSys";\r\n      src -> coding.code = '20479-4' "measlesIgMCode";\r\n      src -> coding.display = 'Measles virus IgM Ab [Presence] in Serum' "measlesIgMDisplay";\r\n    } "measlesIgMCoding";\r\n    src -> code.text = 'Measles IgM' "obsText";\r\n  } "codeBlock";\r\n  src.subject as subj ->  obs.subject as ref,  ref.reference = ('Patient/' + subj.reference);\r\n  // Lab ID as identifier\r\n  src.item as item where linkId = '8732404074721' then {\r\n    item.answer first as ans -> obs.identifier as id then {\r\n      ans -> id.system = 'http://example.org/identifier/lab-id' "labIdSys";\r\n      ans -> id.value = ans.valueString "labIdValue";\r\n    } "labId";\r\n  } "labIdItem";\r\n  // Specimen sent date → effective period start\r\n  src.item as item where linkId = '718251724172' then {\r\n    item.answer first as ans -> obs.effective = ans.valueDate "effectiveDate";\r\n  } "specimenSentDate";\r\n  // Date specimen received → issued\r\n  src.item as item where linkId = 'date-specimen-received' then {\r\n    item.answer first as ans -> obs.issued = ans.valueDate "issued";\r\n  } "receivedDate";\r\n  // Specimen condition as note\r\n  src.item as item where linkId = 'specimen-condition' then {\r\n    item.answer first as ans ->  obs.note as note,  note.text = ('Specimen condition: ' + ans.valueCoding.display) "conditionNote";\r\n  } "specimenCondition";\r\n  // Measles IgM result → value\r\n  src.item as item where linkId = 'measles-igm' then {\r\n    item.answer first as ans -> obs.valueCodeableConcept as coding then {\r\n      ans -> coding.coding as cod then {\r\n        ans -> cod.system = 'http://example.org/CodeSystem/lab-result' "resultSys";\r\n        ans -> cod.code = (ans.valueCoding.code) "resultCode";\r\n        ans -> cod.display = (ans.valueCoding.display) "resultDisplay";\r\n      } "resultCoding";\r\n    } "measlesIgMResult";\r\n    // Interpretation\r\n    item.answer first as ans -> obs.interpretation as interp then {\r\n      ans.valueCoding as val where code = 'Positive' ->  interp.coding as cod,  cod.system = 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',  cod.code = 'POS',  cod.display = 'Positive' "posInterp";\r\n      ans.valueCoding as val where code = 'Negative' ->  interp.coding as cod,  cod.system = 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',  cod.code = 'NEG',  cod.display = 'Negative' "negInterp";\r\n      ans.valueCoding as val where code = 'Indeterminate' ->  interp.coding as cod,  cod.system = 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',  cod.code = 'IND',  cod.display = 'Indeterminate' "indInterp";\r\n    } "interpretation";\r\n  } "measlesIgMItem";\r\n  // Date results sent out\r\n  src.item as item where linkId = 'date-lab-sent-results' then {\r\n    item.answer first as ans -> obs.extension as ext then {\r\n      ans -> ext.url = 'http://example.org/StructureDefinition/resultsSentDate' "extUrl";\r\n      ans -> ext.valueDate = ans.valueDate "extValue";\r\n    } "resultsSentExt";\r\n  } "resultsSentDate";\r\n  // Regional lab referral date\r\n  src.item as item where linkId = '655865451155' then {\r\n    item.answer first as ans -> obs.extension as ext then {\r\n      ans -> ext.url = 'http://example.org/StructureDefinition/regionalLabDate' "extUrl";\r\n      ans -> ext.valueDate = ans.valueDate "extValue";\r\n    } "regionalLabExt";\r\n  } "regionalLabDate";\r\n  // Final classification as note\r\n  src.item as item where linkId = 'final-classification' then {\r\n    item.answer first as ans ->  obs.note as note,  note.text = ('Final classification: ' + ans.valueCoding.display) "classificationNote";\r\n  } "finalClassification";\r\n}\r\n\r\ngroup MapRubellaIgM(source src : QuestionnaireResponse, target obs : Observation) {\r\n  src -> obs.id = uuid() "obsId";\r\n  src -> obs.status = 'final' "status";\r\n  // LOINC code for Rubella virus IgM Ab in Serum\r\n  src -> obs.code as code then {\r\n    src -> code.coding as coding then {\r\n      src -> coding.system = 'http://loinc.org' "loincSys";\r\n      src -> coding.code = '22501-3' "rubellaIgMCode";\r\n      src -> coding.display = 'Rubella virus IgM Ab [Presence] in Serum' "rubellaIgMDisplay";\r\n    } "rubellaIgMCoding";\r\n    src -> code.text = 'Rubella IgM' "obsText";\r\n  } "codeBlock";\r\n  src.subject as subj ->  obs.subject as ref,  ref.reference = ('Patient/' + subj.reference);\r\n  // Lab ID as identifier\r\n  src.item as item where linkId = '8732404074721' then {\r\n    item.answer first as ans -> obs.identifier as id then {\r\n      ans -> id.system = 'http://example.org/identifier/lab-id' "labIdSys";\r\n      ans -> id.value = ans.valueString "labIdValue";\r\n    } "labId";\r\n  } "labIdItem";\r\n  // Specimen received date → effective\r\n  src.item as item where linkId = 'date-specimen-received' then {\r\n    item.answer first as ans -> obs.effective = ans.valueDate "effectiveDate";\r\n  } "receivedDate";\r\n  // Rubella IgM result → value\r\n  src.item as item where linkId = 'rubella-igm' then {\r\n    item.answer first as ans -> obs.valueCodeableConcept as coding then {\r\n      ans -> coding.coding as cod then {\r\n        ans -> cod.system = 'http://example.org/CodeSystem/lab-result' "resultSys";\r\n        ans -> cod.code = (ans.valueCoding.code) "resultCode";\r\n        ans -> cod.display = (ans.valueCoding.display) "resultDisplay";\r\n      } "resultCoding";\r\n    } "rubellaIgMResult";\r\n    // Interpretation\r\n    item.answer first as ans -> obs.interpretation as interp then {\r\n      ans.valueCoding as val where code = 'Positive' ->  interp.coding as cod,  cod.system = 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',  cod.code = 'POS',  cod.display = 'Positive' "posInterp";\r\n      ans.valueCoding as val where code = 'Negative' ->  interp.coding as cod,  cod.system = 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',  cod.code = 'NEG',  cod.display = 'Negative' "negInterp";\r\n      ans.valueCoding as val where code = 'Indeterminate' ->  interp.coding as cod,  cod.system = 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',  cod.code = 'IND',  cod.display = 'Indeterminate' "indInterp";\r\n    } "interpretation";\r\n  } "rubellaIgMItem";\r\n  // Status: not done if absent\r\n  src.item as item where linkId = 'rubella-igm' then {\r\n    item where answer.empty() ->  obs.status = 'cancelled',  obs.dataAbsentReason as reason,  reason.coding as cod,  cod.system = 'http://terminology.hl7.org/CodeSystem/data-absent-reason',  cod.code = 'not-performed' "notDone";\r\n  } "rubellaNotDone";\r\n}\r\n\r\ngroup MapLabDiagnosticReport(source src : QuestionnaireResponse, target report : DiagnosticReport) {\r\n  src -> report.id = uuid() "reportId";\r\n  src -> report.status = 'final' "status";\r\n  // Category: Laboratory\r\n  src -> report.category as cat then {\r\n    src -> cat.coding as coding then {\r\n      src -> coding.system = 'http://terminology.hl7.org/CodeSystem/v2-0074' "catSys";\r\n      src -> coding.code = 'LAB' "catCode";\r\n      src -> coding.display = 'Laboratory' "catDisplay";\r\n    } "catCoding";\r\n  } "category";\r\n  // Measles serology panel LOINC\r\n  src -> report.code as code then {\r\n    src -> code.coding as coding then {\r\n      src -> coding.system = 'http://loinc.org' "loincSys";\r\n      src -> coding.code = '41852-5' "panelCode";\r\n      src -> coding.display = 'Microorganism or agent identified in Specimen' "panelDisplay";\r\n    } "panelCoding";\r\n    src -> code.text = 'Measles/Rubella Serology Panel' "codeText";\r\n  } "codeBlock";\r\n  src.subject as subj ->  report.subject as ref,  ref.reference = ('Patient/' + subj.reference);\r\n  // Lab ID\r\n  src.item as item where linkId = '8732404074721' then {\r\n    item.answer first as ans -> report.identifier as id then {\r\n      ans -> id.system = 'http://example.org/identifier/lab-id' "labIdSys";\r\n      ans -> id.value = ans.valueString "labIdValue";\r\n    } "labId";\r\n  } "labIdItem";\r\n  // Effective date from specimen received\r\n  src.item as item where linkId = 'date-specimen-received' then {\r\n    item.answer first as ans -> report.effective = ans.valueDate "effectiveDate";\r\n  } "effectiveDate";\r\n  // Issued date from results sent\r\n  src.item as item where linkId = 'date-lab-sent-results' then {\r\n    item.answer first as ans -> report.issued = ans.valueDate "issued";\r\n  } "issuedDate";\r\n  // Final classification as conclusion\r\n  src.item as item where linkId = 'final-classification' then {\r\n    item.answer first as ans -> report.conclusion = (ans.valueCoding.display) "conclusion";\r\n    item.answer first as ans -> report.conclusionCode as code then {\r\n      ans ->  code.coding as cod,  cod.system = 'http://example.org/CodeSystem/measles-classification',  cod.code = (ans.valueCoding.code),  cod.display = (ans.valueCoding.display) "conclusionCode";\r\n    } "conclusionCode";\r\n  } "classification";\r\n}\r\n\r\n
" }, "url" : "http://example.org/StructureMap/MeaslesLabResultsMap", "version" : "0.1.0", "name" : "MeaslesLabResultsMap", "status" : "draft", "date" : "2026-05-04T06:19:40+00:00", "publisher" : "Kenya National Public Health Institute", "contact" : [{ "name" : "Kenya National Public Health Institute", "telecom" : [{ "system" : "url", "value" : "https://www.nphi.go.ke/" }] }, { "name" : "Kenya National Public Health Institute", "telecom" : [{ "system" : "url", "value" : "https://www.nphi.go.ke/", "use" : "work" }] }], "description" : "Measles Lab Results QuestionnaireResponse to FHIR resources\r\nMaps to: Observation (Measles IgM), Observation (Rubella IgM), DiagnosticReport", "jurisdiction" : [{ "coding" : [{ "system" : "urn:iso:std:iso:3166", "code" : "KE", "display" : "Kenya" }] }], "structure" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse", "mode" : "source", "alias" : "QuestionnaireResponse" }, { "url" : "http://hl7.org/fhir/StructureDefinition/Bundle", "mode" : "target", "alias" : "Bundle" }, { "url" : "http://hl7.org/fhir/StructureDefinition/Observation", "mode" : "target", "alias" : "Observation" }, { "url" : "http://hl7.org/fhir/StructureDefinition/DiagnosticReport", "mode" : "target", "alias" : "DiagnosticReport" }], "group" : [{ "name" : "MeaslesLabResultsMap", "typeMode" : "none", "input" : [{ "name" : "src", "type" : "QuestionnaireResponse", "mode" : "source" }, { "name" : "bundle", "type" : "Bundle", "mode" : "target" }], "rule" : [{ "name" : "bundleId", "source" : [{ "context" : "src" }], "target" : [{ "context" : "bundle", "contextType" : "variable", "element" : "id", "transform" : "uuid" }] }, { "name" : "bundleType", "source" : [{ "context" : "src" }], "target" : [{ "context" : "bundle", "contextType" : "variable", "element" : "type", "transform" : "copy", "parameter" : [{ "valueString" : "transaction" }] }] }, { "name" : "measlesIgMEntry", "source" : [{ "context" : "src" }], "target" : [{ "context" : "bundle", "contextType" : "variable", "element" : "entry", "variable" : "e" }], "rule" : [{ "name" : "execMeaslesIgM", "source" : [{ "context" : "src" }], "target" : [{ "context" : "e", "contextType" : "variable", "element" : "resource", "variable" : "measlesObs", "transform" : "create", "parameter" : [{ "valueString" : "Observation" }] }], "dependent" : [{ "name" : "MapMeaslesIgM", "variable" : ["src", "measlesObs"] }] }, { "name" : "measlesObsReq", "source" : [{ "context" : "src" }], "target" : [{ "context" : "e", "contextType" : "variable", "element" : "request", "variable" : "req" }, { "context" : "req", "contextType" : "variable", "element" : "method", "transform" : "copy", "parameter" : [{ "valueString" : "POST" }] }, { "context" : "req", "contextType" : "variable", "element" : "url", "transform" : "copy", "parameter" : [{ "valueString" : "Observation" }] }] }] }, { "name" : "rubellaIgMEntry", "source" : [{ "context" : "src" }], "target" : [{ "context" : "bundle", "contextType" : "variable", "element" : "entry", "variable" : "e" }], "rule" : [{ "name" : "execRubellaIgM", "source" : [{ "context" : "src" }], "target" : [{ "context" : "e", "contextType" : "variable", "element" : "resource", "variable" : "rubellaObs", "transform" : "create", "parameter" : [{ "valueString" : "Observation" }] }], "dependent" : [{ "name" : "MapRubellaIgM", "variable" : ["src", "rubellaObs"] }] }, { "name" : "rubellaObsReq", "source" : [{ "context" : "src" }], "target" : [{ "context" : "e", "contextType" : "variable", "element" : "request", "variable" : "req" }, { "context" : "req", "contextType" : "variable", "element" : "method", "transform" : "copy", "parameter" : [{ "valueString" : "POST" }] }, { "context" : "req", "contextType" : "variable", "element" : "url", "transform" : "copy", "parameter" : [{ "valueString" : "Observation" }] }] }] }, { "name" : "diagnosticReportEntry", "source" : [{ "context" : "src" }], "target" : [{ "context" : "bundle", "contextType" : "variable", "element" : "entry", "variable" : "e" }], "rule" : [{ "name" : "execReport", "source" : [{ "context" : "src" }], "target" : [{ "context" : "e", "contextType" : "variable", "element" : "resource", "variable" : "report", "transform" : "create", "parameter" : [{ "valueString" : "DiagnosticReport" }] }], "dependent" : [{ "name" : "MapLabDiagnosticReport", "variable" : ["src", "report"] }] }, { "name" : "reportReq", "source" : [{ "context" : "src" }], "target" : [{ "context" : "e", "contextType" : "variable", "element" : "request", "variable" : "req" }, { "context" : "req", "contextType" : "variable", "element" : "method", "transform" : "copy", "parameter" : [{ "valueString" : "POST" }] }, { "context" : "req", "contextType" : "variable", "element" : "url", "transform" : "copy", "parameter" : [{ "valueString" : "DiagnosticReport" }] }] }] }] }, { "name" : "MapMeaslesIgM", "typeMode" : "none", "input" : [{ "name" : "src", "type" : "QuestionnaireResponse", "mode" : "source" }, { "name" : "obs", "type" : "Observation", "mode" : "target" }], "rule" : [{ "name" : "obsId", "source" : [{ "context" : "src" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "id", "transform" : "uuid" }] }, { "name" : "status", "source" : [{ "context" : "src" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "status", "transform" : "copy", "parameter" : [{ "valueString" : "final" }] }] }, { "name" : "codeBlock", "source" : [{ "context" : "src" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "code", "variable" : "code" }], "rule" : [{ "name" : "measlesIgMCoding", "source" : [{ "context" : "src" }], "target" : [{ "context" : "code", "contextType" : "variable", "element" : "coding", "variable" : "coding" }], "rule" : [{ "name" : "loincSys", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://loinc.org" }] }] }, { "name" : "measlesIgMCode", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "20479-4" }] }] }, { "name" : "measlesIgMDisplay", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Measles virus IgM Ab [Presence] in Serum" }] }] }] }, { "name" : "obsText", "source" : [{ "context" : "src" }], "target" : [{ "context" : "code", "contextType" : "variable", "element" : "text", "transform" : "copy", "parameter" : [{ "valueString" : "Measles IgM" }] }] }] }, { "name" : "subject", "source" : [{ "context" : "src", "element" : "subject", "variable" : "subj" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "subject", "variable" : "ref" }, { "context" : "ref", "contextType" : "variable", "element" : "reference", "transform" : "evaluate", "parameter" : [{ "valueString" : "'Patient/' + subj.reference" }] }] }, { "name" : "labIdItem", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = '8732404074721'" }], "rule" : [{ "name" : "labId", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "identifier", "variable" : "id" }], "rule" : [{ "name" : "labIdSys", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "id", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://example.org/identifier/lab-id" }] }] }, { "name" : "labIdValue", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "id", "contextType" : "variable", "element" : "value", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueString" }] }] }] }] }, { "name" : "specimenSentDate", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = '718251724172'" }], "rule" : [{ "name" : "effectiveDate", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "effective", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueDate" }] }] }] }, { "name" : "receivedDate", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'date-specimen-received'" }], "rule" : [{ "name" : "issued", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "issued", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueDate" }] }] }] }, { "name" : "specimenCondition", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'specimen-condition'" }], "rule" : [{ "name" : "conditionNote", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "note", "variable" : "note" }, { "context" : "note", "contextType" : "variable", "element" : "text", "transform" : "evaluate", "parameter" : [{ "valueString" : "'Specimen condition: ' + ans.valueCoding.display" }] }] }] }, { "name" : "measlesIgMItem", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'measles-igm'" }], "rule" : [{ "name" : "measlesIgMResult", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "valueCodeableConcept", "variable" : "coding" }], "rule" : [{ "name" : "resultCoding", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "coding", "variable" : "cod" }], "rule" : [{ "name" : "resultSys", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://example.org/CodeSystem/lab-result" }] }] }, { "name" : "resultCode", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "evaluate", "parameter" : [{ "valueString" : "ans.valueCoding.code" }] }] }, { "name" : "resultDisplay", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "evaluate", "parameter" : [{ "valueString" : "ans.valueCoding.display" }] }] }] }] }, { "name" : "interpretation", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "interpretation", "variable" : "interp" }], "rule" : [{ "name" : "posInterp", "source" : [{ "context" : "ans", "element" : "valueCoding", "variable" : "val", "condition" : "code = 'Positive'" }], "target" : [{ "context" : "interp", "contextType" : "variable", "element" : "coding", "variable" : "cod" }, { "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" }] }, { "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "POS" }] }, { "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Positive" }] }] }, { "name" : "negInterp", "source" : [{ "context" : "ans", "element" : "valueCoding", "variable" : "val", "condition" : "code = 'Negative'" }], "target" : [{ "context" : "interp", "contextType" : "variable", "element" : "coding", "variable" : "cod" }, { "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" }] }, { "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "NEG" }] }, { "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Negative" }] }] }, { "name" : "indInterp", "source" : [{ "context" : "ans", "element" : "valueCoding", "variable" : "val", "condition" : "code = 'Indeterminate'" }], "target" : [{ "context" : "interp", "contextType" : "variable", "element" : "coding", "variable" : "cod" }, { "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" }] }, { "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "IND" }] }, { "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Indeterminate" }] }] }] }] }, { "name" : "resultsSentDate", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'date-lab-sent-results'" }], "rule" : [{ "name" : "resultsSentExt", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "extension", "variable" : "ext" }], "rule" : [{ "name" : "extUrl", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "ext", "contextType" : "variable", "element" : "url", "transform" : "copy", "parameter" : [{ "valueString" : "http://example.org/StructureDefinition/resultsSentDate" }] }] }, { "name" : "extValue", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "ext", "contextType" : "variable", "element" : "valueDate", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueDate" }] }] }] }] }, { "name" : "regionalLabDate", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = '655865451155'" }], "rule" : [{ "name" : "regionalLabExt", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "extension", "variable" : "ext" }], "rule" : [{ "name" : "extUrl", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "ext", "contextType" : "variable", "element" : "url", "transform" : "copy", "parameter" : [{ "valueString" : "http://example.org/StructureDefinition/regionalLabDate" }] }] }, { "name" : "extValue", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "ext", "contextType" : "variable", "element" : "valueDate", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueDate" }] }] }] }] }, { "name" : "finalClassification", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'final-classification'" }], "rule" : [{ "name" : "classificationNote", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "note", "variable" : "note" }, { "context" : "note", "contextType" : "variable", "element" : "text", "transform" : "evaluate", "parameter" : [{ "valueString" : "'Final classification: ' + ans.valueCoding.display" }] }] }] }] }, { "name" : "MapRubellaIgM", "typeMode" : "none", "input" : [{ "name" : "src", "type" : "QuestionnaireResponse", "mode" : "source" }, { "name" : "obs", "type" : "Observation", "mode" : "target" }], "rule" : [{ "name" : "obsId", "source" : [{ "context" : "src" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "id", "transform" : "uuid" }] }, { "name" : "status", "source" : [{ "context" : "src" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "status", "transform" : "copy", "parameter" : [{ "valueString" : "final" }] }] }, { "name" : "codeBlock", "source" : [{ "context" : "src" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "code", "variable" : "code" }], "rule" : [{ "name" : "rubellaIgMCoding", "source" : [{ "context" : "src" }], "target" : [{ "context" : "code", "contextType" : "variable", "element" : "coding", "variable" : "coding" }], "rule" : [{ "name" : "loincSys", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://loinc.org" }] }] }, { "name" : "rubellaIgMCode", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "22501-3" }] }] }, { "name" : "rubellaIgMDisplay", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Rubella virus IgM Ab [Presence] in Serum" }] }] }] }, { "name" : "obsText", "source" : [{ "context" : "src" }], "target" : [{ "context" : "code", "contextType" : "variable", "element" : "text", "transform" : "copy", "parameter" : [{ "valueString" : "Rubella IgM" }] }] }] }, { "name" : "subject", "source" : [{ "context" : "src", "element" : "subject", "variable" : "subj" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "subject", "variable" : "ref" }, { "context" : "ref", "contextType" : "variable", "element" : "reference", "transform" : "evaluate", "parameter" : [{ "valueString" : "'Patient/' + subj.reference" }] }] }, { "name" : "labIdItem", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = '8732404074721'" }], "rule" : [{ "name" : "labId", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "identifier", "variable" : "id" }], "rule" : [{ "name" : "labIdSys", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "id", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://example.org/identifier/lab-id" }] }] }, { "name" : "labIdValue", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "id", "contextType" : "variable", "element" : "value", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueString" }] }] }] }] }, { "name" : "receivedDate", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'date-specimen-received'" }], "rule" : [{ "name" : "effectiveDate", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "effective", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueDate" }] }] }] }, { "name" : "rubellaIgMItem", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'rubella-igm'" }], "rule" : [{ "name" : "rubellaIgMResult", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "valueCodeableConcept", "variable" : "coding" }], "rule" : [{ "name" : "resultCoding", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "coding", "variable" : "cod" }], "rule" : [{ "name" : "resultSys", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://example.org/CodeSystem/lab-result" }] }] }, { "name" : "resultCode", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "evaluate", "parameter" : [{ "valueString" : "ans.valueCoding.code" }] }] }, { "name" : "resultDisplay", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "evaluate", "parameter" : [{ "valueString" : "ans.valueCoding.display" }] }] }] }] }, { "name" : "interpretation", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "interpretation", "variable" : "interp" }], "rule" : [{ "name" : "posInterp", "source" : [{ "context" : "ans", "element" : "valueCoding", "variable" : "val", "condition" : "code = 'Positive'" }], "target" : [{ "context" : "interp", "contextType" : "variable", "element" : "coding", "variable" : "cod" }, { "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" }] }, { "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "POS" }] }, { "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Positive" }] }] }, { "name" : "negInterp", "source" : [{ "context" : "ans", "element" : "valueCoding", "variable" : "val", "condition" : "code = 'Negative'" }], "target" : [{ "context" : "interp", "contextType" : "variable", "element" : "coding", "variable" : "cod" }, { "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" }] }, { "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "NEG" }] }, { "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Negative" }] }] }, { "name" : "indInterp", "source" : [{ "context" : "ans", "element" : "valueCoding", "variable" : "val", "condition" : "code = 'Indeterminate'" }], "target" : [{ "context" : "interp", "contextType" : "variable", "element" : "coding", "variable" : "cod" }, { "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation" }] }, { "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "IND" }] }, { "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Indeterminate" }] }] }] }] }, { "name" : "rubellaNotDone", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'rubella-igm'" }], "rule" : [{ "name" : "notDone", "source" : [{ "context" : "item", "condition" : "answer.empty()" }], "target" : [{ "context" : "obs", "contextType" : "variable", "element" : "status", "transform" : "copy", "parameter" : [{ "valueString" : "cancelled" }] }, { "context" : "obs", "contextType" : "variable", "element" : "dataAbsentReason", "variable" : "reason" }, { "context" : "reason", "contextType" : "variable", "element" : "coding", "variable" : "cod" }, { "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://terminology.hl7.org/CodeSystem/data-absent-reason" }] }, { "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "not-performed" }] }] }] }] }, { "name" : "MapLabDiagnosticReport", "typeMode" : "none", "input" : [{ "name" : "src", "type" : "QuestionnaireResponse", "mode" : "source" }, { "name" : "report", "type" : "DiagnosticReport", "mode" : "target" }], "rule" : [{ "name" : "reportId", "source" : [{ "context" : "src" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "id", "transform" : "uuid" }] }, { "name" : "status", "source" : [{ "context" : "src" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "status", "transform" : "copy", "parameter" : [{ "valueString" : "final" }] }] }, { "name" : "category", "source" : [{ "context" : "src" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "category", "variable" : "cat" }], "rule" : [{ "name" : "catCoding", "source" : [{ "context" : "src" }], "target" : [{ "context" : "cat", "contextType" : "variable", "element" : "coding", "variable" : "coding" }], "rule" : [{ "name" : "catSys", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://terminology.hl7.org/CodeSystem/v2-0074" }] }] }, { "name" : "catCode", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "LAB" }] }] }, { "name" : "catDisplay", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Laboratory" }] }] }] }] }, { "name" : "codeBlock", "source" : [{ "context" : "src" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "code", "variable" : "code" }], "rule" : [{ "name" : "panelCoding", "source" : [{ "context" : "src" }], "target" : [{ "context" : "code", "contextType" : "variable", "element" : "coding", "variable" : "coding" }], "rule" : [{ "name" : "loincSys", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://loinc.org" }] }] }, { "name" : "panelCode", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "code", "transform" : "copy", "parameter" : [{ "valueString" : "41852-5" }] }] }, { "name" : "panelDisplay", "source" : [{ "context" : "src" }], "target" : [{ "context" : "coding", "contextType" : "variable", "element" : "display", "transform" : "copy", "parameter" : [{ "valueString" : "Microorganism or agent identified in Specimen" }] }] }] }, { "name" : "codeText", "source" : [{ "context" : "src" }], "target" : [{ "context" : "code", "contextType" : "variable", "element" : "text", "transform" : "copy", "parameter" : [{ "valueString" : "Measles/Rubella Serology Panel" }] }] }] }, { "name" : "subject", "source" : [{ "context" : "src", "element" : "subject", "variable" : "subj" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "subject", "variable" : "ref" }, { "context" : "ref", "contextType" : "variable", "element" : "reference", "transform" : "evaluate", "parameter" : [{ "valueString" : "'Patient/' + subj.reference" }] }] }, { "name" : "labIdItem", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = '8732404074721'" }], "rule" : [{ "name" : "labId", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "identifier", "variable" : "id" }], "rule" : [{ "name" : "labIdSys", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "id", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://example.org/identifier/lab-id" }] }] }, { "name" : "labIdValue", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "id", "contextType" : "variable", "element" : "value", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueString" }] }] }] }] }, { "name" : "effectiveDate", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'date-specimen-received'" }], "rule" : [{ "name" : "effectiveDate", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "effective", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueDate" }] }] }] }, { "name" : "issuedDate", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'date-lab-sent-results'" }], "rule" : [{ "name" : "issued", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "issued", "transform" : "copy", "parameter" : [{ "valueId" : "ans.valueDate" }] }] }] }, { "name" : "classification", "source" : [{ "context" : "src", "element" : "item", "variable" : "item", "condition" : "linkId = 'final-classification'" }], "rule" : [{ "name" : "conclusion", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "conclusion", "transform" : "evaluate", "parameter" : [{ "valueString" : "ans.valueCoding.display" }] }] }, { "name" : "conclusionCode", "source" : [{ "context" : "item", "element" : "answer", "listMode" : "first", "variable" : "ans" }], "target" : [{ "context" : "report", "contextType" : "variable", "element" : "conclusionCode", "variable" : "code" }], "rule" : [{ "name" : "conclusionCode", "source" : [{ "context" : "ans" }], "target" : [{ "context" : "code", "contextType" : "variable", "element" : "coding", "variable" : "cod" }, { "context" : "cod", "contextType" : "variable", "element" : "system", "transform" : "copy", "parameter" : [{ "valueString" : "http://example.org/CodeSystem/measles-classification" }] }, { "context" : "cod", "contextType" : "variable", "element" : "code", "transform" : "evaluate", "parameter" : [{ "valueString" : "ans.valueCoding.code" }] }, { "context" : "cod", "contextType" : "variable", "element" : "display", "transform" : "evaluate", "parameter" : [{ "valueString" : "ans.valueCoding.display" }] }] }] }] }] }] }