INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/IHE/PCC.PCSc --branch master repo DEBUG:root:Time to deadline 35879.997868 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.579212 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.205319 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 128 packages in 6s 11 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.9.0 npm notice Changelog: npm notice Run `npm install -g npm@10.9.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/IHE/PCC.PCSc/ -out /scratch/repo DEBUG:root:Time to deadline 35872.263807 seconds FHIR IG Publisher Version 1.7.1 (Git# 74ea670a3891). Built 2024-10-25T03:52:19.844Z (4 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/IHE/PCC.PCSc/ -out /scratch/repo Start Clock @ Tuesday, October 29, 2024, 6:30:13 PM Coordinated Universal Time (2024-10-29T18:30:13Z) Build FHIR IG from /scratch/repo (00:00.029 / 00:00.029, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.034, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.037, 89Mb) Run Sushi on /scratch/repo (00:00.006 / 00:00.044, 89Mb) Sushi: info Running SUSHI v3.12.0 (implements FHIR Shorthand specification v3.0.0) (00:00.700 / 00:00.745, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.745, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.746, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.746, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.746, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.725 / 00:01.472, 113Mb) Sushi: info Importing FSH text... (00:00.167 / 00:01.639, 113Mb) Sushi: info Preprocessed 2 documents with 6 aliases. (00:00.085 / 00:01.724, 113Mb) Sushi: info Imported 1 definitions and 0 instances. (00:00.009 / 00:01.734, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.003 / 00:01.737, 113Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.031 / 00:01.768, 113Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.144 / 00:01.913, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.022 / 00:01.935, 113Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.110 / 00:02.046, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r5#6.0.2... (00:00.574 / 00:02.620, 113Mb) Sushi: info Did not find hl7.terminology.r5#6.0.2 in /home/fhiruser/.fhir/packages. (00:00.031 / 00:02.652, 113Mb) Sushi: info Downloading hl7.terminology.r5#6.0.2... https://packages.fhir.org/hl7.terminology.r5/6.0.2 (00:00.000 / 00:02.653, 113Mb) Sushi: info Downloaded hl7.terminology.r5#6.0.2 (00:02.564 / 00:05.217, 113Mb) Sushi: info Loaded package hl7.terminology.r5#6.0.2 (00:02.330 / 00:07.548, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r5#5.1.0... (00:00.479 / 00:08.028, 113Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r5#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.574 / 00:08.602, 113Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r5#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r5/5.1.0 (00:00.000 / 00:08.603, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r5#5.1.0 (00:02.248 / 00:10.852, 113Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r5#5.1.0 (00:01.481 / 00:12.333, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.cda.uv.core#current... (00:00.000 / 00:12.334, 113Mb) Sushi: info Did not find hl7.cda.uv.core#current in /home/fhiruser/.fhir/packages. (00:00.759 / 00:13.093, 113Mb) Sushi: info Downloading hl7.cda.uv.core#current... https://build.fhir.org/ig/HL7/CDA-core-sd/branches/master/package.tgz (00:00.121 / 00:13.215, 113Mb) Sushi: info Downloaded hl7.cda.uv.core#current (00:00.021 / 00:13.236, 113Mb) Sushi: info Loaded package hl7.cda.uv.core#current (00:00.906 / 00:14.143, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r5.core#5.0.0... (00:00.000 / 00:14.143, 113Mb) Sushi: info Did not find hl7.fhir.r5.core#5.0.0 in /home/fhiruser/.fhir/packages. (00:00.889 / 00:15.033, 113Mb) Sushi: info Downloading hl7.fhir.r5.core#5.0.0... https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.000 / 00:15.033, 113Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:03.389 / 00:18.423, 113Mb) Sushi: info Loaded package hl7.fhir.r5.core#5.0.0 (00:03.467 / 00:21.890, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.077 / 00:21.968, 113Mb) Sushi: error No element found at path templateId[0] for AssignmentRule in IHE_PCC_PSC_CS_ClinicalDocument, skipping rule (00:00.018 / 00:21.987, 113Mb) Sushi: File: /scratch/repo/input/fsh/IHE_PCC_PSC_CS_ClinicalDocument.fsh (00:00.000 / 00:21.987, 113Mb) Sushi: Line: 8 - 9 (00:00.000 / 00:21.987, 113Mb) Sushi: error No element found at path templateId[1] for AssignmentRule in IHE_PCC_PSC_CS_ClinicalDocument, skipping rule (00:00.000 / 00:21.988, 113Mb) Sushi: File: /scratch/repo/input/fsh/IHE_PCC_PSC_CS_ClinicalDocument.fsh (00:00.000 / 00:21.988, 113Mb) Sushi: Line: 10 (00:00.000 / 00:21.988, 113Mb) Sushi: error No element found at path templateId[2] for AssignmentRule in IHE_PCC_PSC_CS_ClinicalDocument, skipping rule (00:00.000 / 00:21.988, 113Mb) Sushi: File: /scratch/repo/input/fsh/IHE_PCC_PSC_CS_ClinicalDocument.fsh (00:00.000 / 00:21.989, 113Mb) Sushi: Line: 11 (00:00.000 / 00:21.989, 113Mb) Sushi: error Cannot assign code value: http://loinc.org#77596-5. Value does not match element type: http://hl7.org/cda/stds/core/StructureDefinition/CE (00:00.002 / 00:21.991, 113Mb) Sushi: File: /scratch/repo/input/fsh/IHE_PCC_PSC_CS_ClinicalDocument.fsh (00:00.000 / 00:21.991, 113Mb) Sushi: Line: 12 (00:00.000 / 00:21.992, 113Mb) Sushi: info Converted 1 FHIR StructureDefinitions. (00:00.016 / 00:22.008, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 00:22.010, 113Mb) Sushi: info Exported 1 FHIR resources as JSON. (00:00.011 / 00:22.021, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:22.022, 113Mb) Sushi: info Generated ImplementationGuide-ihe.pcc.pscc.json (00:00.089 / 00:22.112, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:22.112, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:22.114, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:22.114, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:22.115, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:22.115, 113Mb) Sushi: | | 1 | 0 | 0 | 0 | | (00:00.000 / 00:22.115, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:22.115, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:22.116, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:22.116, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:22.116, 113Mb) Sushi: | | 0 | 0 | 0 | | (00:00.000 / 00:22.117, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:22.117, 113Mb) Sushi: | | (00:00.000 / 00:22.117, 113Mb) Sushi: =================================================================== (00:00.000 / 00:22.117, 113Mb) Sushi: | Call a FSH sturgeon! 4 Errors 0 Warnings | (00:00.000 / 00:22.117, 113Mb) Sushi: =================================================================== (00:00.000 / 00:22.118, 113Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.071 / 00:22.189, 113Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:22.189, 113Mb) Exception: Process exited with an error: 4 (Exit value: 4) (00:00.000 / 00:22.189, 113Mb) Publishing Content Failed: Process exited with an error: 4 (Exit value: 4) (00:00.000 / 00:22.189, 113Mb) (00:00.000 / 00:22.190, 113Mb) Use -? to get command line help (00:00.000 / 00:22.190, 113Mb) (00:00.000 / 00:22.190, 113Mb) Stack Dump (for debugging): (00:00.000 / 00:22.190, 113Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 4 (Exit value: 4) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:2627) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1061) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13653)