INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/IHE/ITI.MHD --branch master repo DEBUG:root:Time to deadline 35879.99807 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.379746 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.261112 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/IHE/ITI.MHD/ -out /scratch/repo DEBUG:root:Time to deadline 35871.217324 seconds FHIR IG Publisher Version 2.0.25 (Git# d48a81e8a0ba). Built 2025-10-30T11:15:41.7Z (4 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/IHE/ITI.MHD/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Monday, November 3, 2025, 6:52:36 PM Coordinated Universal Time (2025-11-03T18:52:36Z) Build FHIR IG from /scratch/repo (00:00.024 / 00:00.024, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.026, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.029, 97Mb) Found dependency on ihe.iti.balp#1.1.4 in Sushi config. Pre-installing (00:00.003 / 00:00.033, 97Mb) Installing ihe.iti.balp#1.1.4 to the package cache  Fetching:  Installing ihe.iti.balp#1.1.4  done. Found dependency on ihe.formatcode.fhir#1.4.x in Sushi config. Pre-installing (00:01.371 / 00:01.405, 64Mb) Installing ihe.formatcode.fhir#1.4.x to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.4.0  done. Run Sushi on /scratch/repo (00:00.246 / 00:01.652, 68Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.559 / 00:02.211, 72Mb) Sushi: info Arguments: (00:00.000 / 00:02.211, 72Mb) Sushi: info --require-latest (00:00.000 / 00:02.212, 72Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:02.212, 72Mb) Sushi: info /scratch/repo (00:00.000 / 00:02.212, 72Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.596 / 00:02.809, 72Mb) Sushi: info Importing FSH text... (00:00.115 / 00:02.924, 72Mb) Sushi: info Preprocessed 38 documents with 13 aliases. (00:00.454 / 00:03.379, 72Mb) Sushi: info Imported 43 definitions and 128 instances. (00:00.056 / 00:03.435, 72Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.127 / 00:03.563, 72Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.600 / 00:04.164, 72Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.000 / 00:04.165, 72Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.821 / 00:04.986, 72Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:04.989, 72Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.061 / 00:05.050, 72Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.460 / 00:05.510, 72Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:05.511, 72Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.658 / 00:08.169, 80Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:08.171, 80Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.228 / 00:09.399, 80Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.452 / 00:09.852, 80Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:09.852, 80Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.487 / 00:11.339, 80Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:11.341, 80Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.219 / 00:11.560, 80Mb) Sushi: info Loaded ihe.iti.balp#1.1.4 with 38 resources (00:00.037 / 00:11.598, 80Mb) Sushi: info Resolved ihe.formatcode.fhir#1.4.x to concrete version 1.4.0 (00:00.460 / 00:12.058, 80Mb) Sushi: info Loaded ihe.formatcode.fhir#1.4.0 with 5 resources (00:00.002 / 00:12.061, 80Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:12.061, 80Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.017 / 00:15.079, 80Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:15.081, 80Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.152 / 00:16.234, 80Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 14 resources (00:00.013 / 00:16.247, 80Mb) Sushi: info Converting FSH to FHIR resources... (00:00.019 / 00:16.267, 80Mb) Sushi: info Converted 38 FHIR StructureDefinitions. (00:02.854 / 00:19.121, 80Mb) Sushi: info Converted 1 FHIR CodeSystems. (00:00.018 / 00:19.140, 80Mb) Sushi: info Converted 4 FHIR ValueSets. (00:00.061 / 00:19.202, 80Mb) Sushi: info Converted 128 FHIR instances. (00:10.077 / 00:29.279, 80Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.021 / 00:29.301, 80Mb) Sushi: info Exported 111 FHIR resources as JSON. (00:00.279 / 00:29.580, 80Mb) Sushi: info Assembling Implementation Guide sources... (00:00.004 / 00:29.585, 80Mb) Sushi: info Generated ImplementationGuide-ihe.iti.mhd.json (00:00.036 / 00:29.621, 80Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:29.622, 80Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:29.623, 80Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:29.624, 80Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:29.624, 80Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:29.624, 80Mb) Sushi: | | 34 | 4 | 0 | 0 | | (00:00.000 / 00:29.624, 80Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:29.624, 80Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:29.624, 80Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:29.625, 80Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:29.625, 80Mb) Sushi: | | 4 | 1 | 128 | | (00:00.000 / 00:29.625, 80Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:29.625, 80Mb) Sushi: | | (00:00.000 / 00:29.625, 80Mb) Sushi: =================================================================== (00:00.000 / 00:29.625, 80Mb) Sushi: | You've proven any-fin is possible. 0 Errors 0 Warnings | (00:00.000 / 00:29.626, 80Mb) Sushi: =================================================================== (00:00.000 / 00:29.626, 80Mb) Root directory: /scratch/repo (00:00.032 / 00:29.658, 80Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.542 / 00:30.201, 57Mb) Load Template from ihe.fhir.template (00:00.510 / 00:30.712, 58Mb) Installing ihe.fhir.template#1.0.0 to the package cache  Fetching:  Installing ihe.fhir.template#1.0.0  done.  Load Template from fhir.base.template#1.0.0 (00:00.519 / 00:31.231, 66Mb) Installing fhir.base.template#1.0.0 to the package cache  Fetching:  Installing fhir.base.template#1.0.0  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.781 / 00:35.013, 377Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:35.014, 377Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-15618209527646977444.html Connect to Terminology Server at http://tx.fhir.org (00:25.402 / 01:00.417, 594Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package ihe.iti.balp#1.1.4 Installing hl7.terminology.r4#6.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.3.0  done. Load Package hl7.terminology.r4#6.3.0 Load Package ihe.formatcode.fhir#1.4.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:10.794 / 01:11.212, 440Mb) Load IG (00:00.000 / 01:11.212, 440Mb) Load Content (00:00.002 / 01:11.215, 443Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.086 / 01:11.301, 456Mb) Process Loaded Resources (00:01.314 / 01:12.616, 592Mb) Generating Snapshots (00:00.604 / 01:13.221, 696Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch https://profiles.ihe.net/ITI/MHD/package-list.json for version check (00:02.822 / 01:16.044, 598Mb) Checking Language (00:00.166 / 01:16.210, 614Mb) Load Dependency Info (00:00.003 / 01:16.214, 614Mb) Load Info (00:00.001 / 01:16.215, 614Mb) Load Paths (00:00.000 / 01:16.216, 620Mb) Check R4 / R4B (00:00.000 / 01:16.216, 620Mb) Assign Comparison Ids (00:00.050 / 01:16.267, 638Mb) Propagating status (00:00.000 / 01:16.267, 638Mb) Generating Narratives (00:00.000 / 01:16.267, 638Mb) Validating Conformance Resources (00:05.834 / 01:22.102, 1Gb) Check profiles & code systems (00:21.150 / 01:43.253, 2Gb) Check realm rules (00:00.008 / 01:43.261, 2Gb) Previous Version Comparison (00:00.000 / 01:43.261, 2Gb) Installing ihe.iti.mhd#5.0.0-comment to the package cache  Fetching: java.io.IOException: Error reading https://profiles.ihe.net/ITI/MHD/5.0.0-comment/package.tgz: Cannot invoke "java.io.InputStream.read(byte[], int, int)" because "this.in" is null at org.hl7.fhir.utilities.npm.NpmPackage.extractFromTgz(NpmPackage.java:561) at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager.lambda$addPackageToCache$5(FilesystemPackageCacheManager.java:584) at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManagerLocks$PackageLock.doWriteWithLock(FilesystemPackageCacheManagerLocks.java:265) at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager.addPackageToCache(FilesystemPackageCacheManager.java:580) at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager.loadPackage(FilesystemPackageCacheManager.java:739) at org.hl7.fhir.igtools.publisher.comparators.PreviousVersionComparator.startChecks(PreviousVersionComparator.java:201) at org.hl7.fhir.igtools.publisher.PublisherProcessor.checkConformanceResources(PublisherProcessor.java:1467) at org.hl7.fhir.igtools.publisher.PublisherProcessor.loadConformance2(PublisherProcessor.java:104) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:403) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:232) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1575) Caused by: java.lang.NullPointerException: Cannot invoke "java.io.InputStream.read(byte[], int, int)" because "this.in" is null at org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:276) at java.base/java.io.BufferedInputStream.fill(BufferedInputStream.java:291) at java.base/java.io.BufferedInputStream.implRead(BufferedInputStream.java:325) at java.base/java.io.BufferedInputStream.read(BufferedInputStream.java:312) at org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream.init(GzipCompressorInputStream.java:210) at org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream.(GzipCompressorInputStream.java:168) at org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream.(GzipCompressorInputStream.java:142) at org.hl7.fhir.utilities.npm.NpmPackage.extractFromTgz(NpmPackage.java:559) ... 10 more Checking for Bundles to sign (00:00.414 / 01:43.676, 2Gb) Validating Resources (00:00.000 / 01:43.676, 2Gb) Processing Provenance Records (00:16.294 / 01:59.971, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:59.971, 1Gb) Generate Native Outputs (00:00.332 / 02:00.304, 1Gb) Run Template (00:09.733 / 02:10.037, 3Gb) Generate HTML Outputs (00:02.725 / 02:12.763, 3Gb) Generate Spreadsheets (00:21.172 / 02:33.935, 8Gb) Generate Summaries (00:11.997 / 02:45.933, 3Gb) Generating Summary Outputs (00:00.000 / 02:45.933, 3Gb) DB Cumulative Time invested: 00:00:01.0 Sending Usage Stats to Server (00:08.334 / 02:54.268, 5Gb) ## Memory (MB): Use = 5384, Free = 13623, Total = 19008, Max = 19008 (00:00.007 / 02:54.275, 5Gb) Reclaiming memory... (00:00.000 / 02:54.275, 5Gb) ## Memory (MB): Use = 817, Free = 18190, Total = 19008, Max = 19008 (00:00.665 / 02:54.941, 825Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.003 / 02:54.944, 825Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:54.944, 825Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:54.944, 825Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:54.944, 825Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.411 / 02:55.356, 841Mb) Jekyll: Generating... (00:00.000 / 02:55.356, 841Mb) Jekyll: done in 5.524 seconds. (00:05.523 / 03:00.879, 853Mb) Checking Output HTML (00:04.783 / 03:05.663, 4Gb) Processed /scratch/repo/output - % reduction = 100 (190649193 ==> 1187677) found 2128 files (00:03.232 / 03:08.895, 9Gb) ........................................ ........................................ ... 2128 html files, 0 pages invalid xhtml (0%) (00:54.346 / 04:03.242, 4Gb) ... 912457 links, 0 broken links (0%) (00:00.000 / 04:03.243, 4Gb) Generate fragment-usage-analysis.csv (00:00.000 / 04:03.243, 4Gb) Build final .zip (00:00.007 / 04:03.250, 4Gb) Final .zip built (00:04.936 / 04:08.187, 4Gb) Built. Times: loading: 00:04.995, generate: 02:55.299, narrative generation: 00:05.834, realm-rules: 00:00.000, previous-version: 00:00.358, jekyll: 00:05.989, validation: 00:37.284 (#126), template: 00:02.733 (#3) (00:03.323 / 04:11.510, 5Gb) Generating QA (00:00.000 / 04:11.511, 5Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links: 0 (00:00.318 / 04:11.829, 5Gb) Finished @ 11/3/25, 6:56 PM. Max Memory Used = 9Gb (00:00.029 / 04:11.859, 5Gb)