INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7NZ/mdr --branch master repo DEBUG:root:Time to deadline 35879.998212 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35876.1214 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35874.150574 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 140 packages in 7s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.2 npm notice Changelog: npm notice Run `npm install -g npm@11.5.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7NZ/mdr/ -out /scratch/repo DEBUG:root:Time to deadline 35867.297457 seconds FHIR IG Publisher Version 2.0.13 (Git# bdf473444570). Built 2025-08-07T03:35:38.89Z (11 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7NZ/mdr/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, August 19, 2025, 12:17:17 AM Coordinated Universal Time (2025-08-19T00:17:17Z) Build FHIR IG from /scratch/repo (00:00.028 / 00:00.029, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.031, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.034, 97Mb) Found dependency on hl7.org.nz.fhir.ig.formulary#current in Sushi config. Pre-installing (00:00.004 / 00:00.039, 97Mb) Installing hl7.org.nz.fhir.ig.formulary#current to the package cache  Fetching:  Installing hl7.org.nz.fhir.ig.formulary#current  done. Found dependency on fhir.org.nz.ig.base#3.0.1 in Sushi config. Pre-installing (00:01.579 / 00:01.619, 72Mb) Installing fhir.org.nz.ig.base#3.0.1 to the package cache  Fetching:  Installing fhir.org.nz.ig.base#3.0.1  done. Run Sushi on /scratch/repo (00:00.985 / 00:02.604, 93Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.737 / 00:03.341, 96Mb) Sushi: info Arguments: (00:00.000 / 00:03.341, 96Mb) Sushi: info --require-latest (00:00.000 / 00:03.342, 96Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:03.342, 96Mb) Sushi: info /scratch/repo (00:00.000 / 00:03.343, 96Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.766 / 00:04.109, 96Mb) Sushi: info Importing FSH text... (00:00.157 / 00:04.266, 96Mb) Sushi: info Preprocessed 29 documents with 29 aliases. (00:00.344 / 00:04.610, 96Mb) Sushi: info Imported 22 definitions and 6 instances. (00:00.031 / 00:04.642, 96Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.164 / 00:04.807, 96Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.612 / 00:05.420, 96Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:05.421, 96Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.795 / 00:06.217, 104Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.003 / 00:06.220, 104Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.081 / 00:06.302, 104Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.473 / 00:06.775, 104Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:06.776, 104Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.432 / 00:09.208, 104Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:09.209, 104Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.796 / 00:11.006, 104Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.460 / 00:11.467, 104Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:11.467, 104Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.522 / 00:12.990, 104Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.002 / 00:12.993, 104Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.344 / 00:13.337, 104Mb) Sushi: info Loaded hl7.org.nz.fhir.ig.formulary#current with 49 resources (00:00.092 / 00:13.430, 104Mb) Sushi: info Loaded fhir.org.nz.ig.base#3.0.1 with 120 resources (00:00.095 / 00:13.525, 104Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:13.526, 104Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.875 / 00:16.402, 104Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:16.403, 104Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.564 / 00:17.967, 104Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 2 resources (00:00.014 / 00:17.982, 104Mb) Sushi: info Converting FSH to FHIR resources... (00:00.022 / 00:18.005, 104Mb) Sushi: info Converted 22 FHIR StructureDefinitions. (00:02.560 / 00:20.565, 104Mb) Sushi: info Converted 6 FHIR instances. (00:00.703 / 00:21.268, 104Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 00:21.269, 104Mb) Sushi: info Exported 28 FHIR resources as JSON. (00:00.065 / 00:21.335, 104Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:21.337, 104Mb) Sushi: info Generated ImplementationGuide-hl7.org.nz.fhir.ig.mdr.json (00:00.067 / 00:21.405, 104Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:21.405, 104Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:21.407, 104Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:21.407, 104Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:21.407, 104Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:21.408, 104Mb) Sushi: | | 3 | 19 | 0 | 0 | | (00:00.000 / 00:21.408, 104Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:21.408, 104Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:21.408, 104Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:21.409, 104Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:21.409, 104Mb) Sushi: | | 0 | 0 | 6 | | (00:00.000 / 00:21.409, 104Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:21.409, 104Mb) Sushi: | | (00:00.000 / 00:21.409, 104Mb) Sushi: =================================================================== (00:00.000 / 00:21.410, 104Mb) Sushi: | You really made a splash! 0 Errors 0 Warnings | (00:00.000 / 00:21.410, 104Mb) Sushi: =================================================================== (00:00.000 / 00:21.410, 104Mb) Root directory: /scratch/repo (00:00.024 / 00:21.434, 104Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.734 / 00:22.169, 65Mb) Load Template from tewhatuora (00:00.694 / 00:22.864, 65Mb) Load Template from fhir.base.template#current (00:00.081 / 00:22.945, 65Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.392 / 00:27.337, 352Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:27.338, 352Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-7331086429388694486.html Connect to Terminology Server at http://tx.fhir.org (00:22.911 / 00:50.249, 205Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Version mismatch. This IG is version 4.0.1, while the IG 'hl7.org.nz.fhir.ig.formulary' is from version 4.3.0 (will try to run anyway) (00:06.880 / 00:57.129, 701Mb) Ignore Dependency on Core FHIR hl7.fhir.r4b.core#4.3.0, from package 'hl7.org.nz.fhir.ig.formulary#current' (00:00.000 / 00:57.130, 701Mb) Load Package hl7.org.nz.fhir.ig.formulary#current Installing hl7.terminology.r4#6.0.2 to the package cache  Fetching:  Installing hl7.terminology.r4#6.0.2  done. Load Package hl7.terminology.r4#6.0.2 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package fhir.org.nz.ig.base#3.0.1 Installing hl7.fhir.uv.tools.r4#0.7.1 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.7.1  done. Load Package hl7.fhir.uv.tools.r4#0.7.1 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:11.719 / 01:08.850, 695Mb) Load IG (00:00.000 / 01:08.850, 695Mb) Load Content (00:00.000 / 01:08.851, 695Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.114 / 01:08.966, 702Mb) Process Loaded Resources (00:01.158 / 01:10.124, 758Mb) Generating Snapshots (00:00.440 / 01:10.564, 814Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org.nz/fhir/ig/mdr/package-list.json for version check (00:01.247 / 01:11.812, 974Mb) Processing Conformance Resources (00:01.490 / 01:13.303, 979Mb) Checking Language (00:00.000 / 01:13.303, 979Mb) Load Dependency Info (00:00.001 / 01:13.304, 979Mb) Load Info (00:00.001 / 01:13.305, 979Mb) Load Paths (00:00.000 / 01:13.305, 984Mb) Check R4 / R4B (00:00.000 / 01:13.306, 984Mb) Assign Comparison Ids (00:00.038 / 01:13.344, 990Mb) Propagating status (00:00.000 / 01:13.344, 990Mb) Generating Narratives (00:00.000 / 01:13.345, 990Mb) Validating Conformance Resources (00:02.648 / 01:15.994, 763Mb) Error fetching https://packages2.fhir.org/packages/hl7.org.nz.fhir.ig.formulary: Not Found Error fetching https://packages2.fhir.org/packages/hl7.org.nz.fhir.ig.formulary: Not Found Failed to determine latest version of package hl7.org.nz.fhir.ig.formulary from server: https://packages2.fhir.org/packages Error fetching https://packages.fhir.org/hl7.org.nz.fhir.ig.formulary: Not Found Failed to determine latest version of package hl7.org.nz.fhir.ig.formulary from server: https://packages.fhir.org Failed to determine latest version of package hl7.org.nz.fhir.ig.formulary from server: build.fhir.org Latest version of package hl7.org.nz.fhir.ig.formulary found locally is current - using that Check profiles & code systems (00:12.482 / 01:28.476, 1Gb) Check realm rules (00:00.002 / 01:28.479, 1Gb) Previous Version Comparison (00:00.000 / 01:28.479, 1Gb) Checking for Bundles to sign (00:00.024 / 01:28.504, 1Gb) Validating Resources (00:00.000 / 01:28.504, 1Gb) Publishing Content Failed: The terminology server https://nzhts.digital.health.nz/fhir is not approved for use with this software (it does not pass the required tests). If you wish to use this server, add the parameter -authorise-non-conformant-tx-servers to the command line parameters (00:01.436 / 01:29.940, 1Gb) (00:00.000 / 01:29.940, 1Gb)