INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7Austria/ELGA-IV-Diabetes-R4 --branch poc_laboratory repo DEBUG:root:Time to deadline 35879.997045 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.723874 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.247696 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 140 packages in 7s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.2 npm notice Changelog: npm notice Run `npm install -g npm@11.5.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7Austria/ELGA-IV-Diabetes-R4/ -out /scratch/repo DEBUG:root:Time to deadline 35869.681933 seconds FHIR IG Publisher Version 2.0.13 (Git# bdf473444570). Built 2025-08-07T03:35:38.89Z (6 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7Austria/ELGA-IV-Diabetes-R4/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Wednesday, August 13, 2025, 5:36:58 AM Coordinated Universal Time (2025-08-13T05:36:58Z) Build FHIR IG from /scratch/repo (00:00.039 / 00:00.040, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.044, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.048, 97Mb) Found dependency on hl7.at.fhir.core.r4#2.0.0 in Sushi config. Pre-installing (00:00.007 / 00:00.056, 97Mb) Installing hl7.at.fhir.core.r4#2.0.0 to the package cache  Fetching:  Installing hl7.at.fhir.core.r4#2.0.0  done. Found dependency on hl7.at.fhir.elga.aps.r4#current in Sushi config. Pre-installing (00:01.770 / 00:01.827, 55Mb) Installing hl7.at.fhir.elga.aps.r4#current to the package cache  Fetching:  Installing hl7.at.fhir.elga.aps.r4#current  done. Run Sushi on /scratch/repo (00:01.255 / 00:03.082, 104Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:01.002 / 00:04.085, 120Mb) Sushi: info Arguments: (00:00.000 / 00:04.085, 120Mb) Sushi: info --require-latest (00:00.000 / 00:04.086, 120Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:04.086, 120Mb) Sushi: info /scratch/repo (00:00.000 / 00:04.087, 120Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.892 / 00:04.979, 120Mb) Sushi: info Importing FSH text... (00:00.209 / 00:05.188, 120Mb) Sushi: info Preprocessed 32 documents with 89 aliases. (00:00.949 / 00:06.138, 120Mb) Sushi: info Imported 21 definitions and 260 instances. (00:00.138 / 00:06.276, 120Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.178 / 00:06.454, 120Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.694 / 00:07.149, 120Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:07.150, 120Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.826 / 00:07.977, 120Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.004 / 00:07.982, 120Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.110 / 00:08.093, 120Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.465 / 00:08.558, 120Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:08.559, 120Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.393 / 00:11.952, 127Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.005 / 00:11.957, 127Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:02.332 / 00:14.289, 127Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.486 / 00:14.776, 127Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:14.776, 127Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.588 / 00:16.365, 127Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:16.367, 127Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.511 / 00:16.878, 127Mb) Sushi: info Loaded hl7.at.fhir.core.r4#2.0.0 with 12 resources (00:00.051 / 00:16.930, 127Mb) Sushi: info Loaded hl7.at.fhir.elga.aps.r4#current with 42 resources (00:00.195 / 00:17.125, 127Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:17.125, 127Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.832 / 00:20.958, 127Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.004 / 00:20.962, 127Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:02.230 / 00:23.192, 127Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.040 / 00:23.233, 127Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.002 / 00:23.235, 127Mb) Sushi: info Converting FSH to FHIR resources... (00:00.031 / 00:23.266, 127Mb) Sushi: info Converted 16 FHIR StructureDefinitions. (00:02.726 / 00:25.993, 127Mb) Sushi: info Converted 5 FHIR ValueSets. (00:00.618 / 00:26.611, 127Mb) Sushi: info Converted 260 FHIR instances. (00:32.327 / 00:58.939, 127Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 00:58.941, 127Mb) Sushi: info Exported 30 FHIR resources as JSON. (00:00.206 / 00:59.148, 127Mb) Sushi: info Assembling Implementation Guide sources... (00:00.004 / 00:59.152, 127Mb) Sushi: warn Files not in the supported file types (.md and .xml) were detected. These files will be included without any processing. (00:00.064 / 00:59.217, 127Mb) Sushi: File: /scratch/repo/input/pagecontent (00:00.000 / 00:59.217, 127Mb) Sushi: info Generated ImplementationGuide-hl7.at.fhir.elga.iv.diab.json (00:00.006 / 00:59.224, 127Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:59.224, 127Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 00:59.227, 127Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:59.228, 127Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:59.228, 127Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:59.228, 127Mb) Sushi: | | 3 | 0 | 13 | 0 | | (00:00.000 / 00:59.229, 127Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:59.229, 127Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:59.229, 127Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:59.229, 127Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:59.230, 127Mb) Sushi: | | 5 | 0 | 260 | | (00:00.000 / 00:59.230, 127Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:59.230, 127Mb) Sushi: | | (00:00.000 / 00:59.230, 127Mb) Sushi: =================================================================== (00:00.000 / 00:59.231, 127Mb) Sushi: | Let minnow if you need some help 0 Errors 1 Warning | (00:00.000 / 00:59.231, 127Mb) Sushi: =================================================================== (00:00.000 / 00:59.232, 127Mb) Root directory: /scratch/repo (00:00.030 / 00:59.263, 127Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.992 / 01:00.255, 64Mb) Load Template from hl7.at.fhir.template#current (00:00.824 / 01:01.080, 65Mb) Installing hl7.at.fhir.template#current to the package cache  Fetching:  Installing hl7.at.fhir.template#current  done.  Load Template from fhir.base.template#current (00:00.376 / 01:01.456, 65Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:06.477 / 01:07.934, 353Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 01:07.934, 353Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-14717766879925755975.html Connect to Terminology Server at http://tx.fhir.org (00:53.498 / 02:01.433, 219Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology.r4#6.2.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.2.0  done. Load Package hl7.terminology.r4#6.2.0 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.at.fhir.core.r4#2.0.0 Installing hl7.terminology.r4#6.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.3.0  done. Load Package hl7.terminology.r4#6.3.0 Installing hl7.fhir.uv.ips#current to the package cache  Fetching:  Installing hl7.fhir.uv.ips#current  done. Load Package hl7.fhir.uv.ips#current Installing hl7.fhir.uv.ipa#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ipa#1.1.0  done. Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Load Package hl7.fhir.uv.ipa#1.1.0 Load Package hl7.at.fhir.elga.aps.r4#current Installing hl7.fhir.uv.tools.r4#0.7.1 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.7.1  done. Load Package hl7.fhir.uv.tools.r4#0.7.1 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:27.329 / 02:28.762, 821Mb) Load IG (00:00.000 / 02:28.763, 821Mb) Load Content (00:00.001 / 02:28.764, 821Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.145 / 02:28.910, 828Mb) Process Loaded Resources (00:01.944 / 02:30.855, 956Mb) Generating Snapshots (00:00.749 / 02:31.605, 1Gb) loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch https://fhir.hl7.at/elga-iv-diabetes-r4/package-list.json for version check (00:02.663 / 02:34.268, 850Mb) Processing Conformance Resources (00:00.253 / 02:34.522, 862Mb) Checking Language (00:00.000 / 02:34.522, 862Mb) Load Dependency Info (00:00.001 / 02:34.523, 862Mb) Load Info (00:00.002 / 02:34.525, 862Mb) Load Paths (00:00.000 / 02:34.526, 866Mb) Check R4 / R4B (00:00.000 / 02:34.527, 866Mb) Assign Comparison Ids (00:00.084 / 02:34.612, 874Mb) Propagating status (00:00.000 / 02:34.612, 874Mb) Generating Narratives (00:00.000 / 02:34.613, 874Mb) Validating Conformance Resources (00:18.594 / 02:53.207, 1Gb) Error fetching https://packages2.fhir.org/packages/hl7.at.fhir.elga.aps.r4: Not Found Error fetching https://packages2.fhir.org/packages/hl7.at.fhir.elga.aps.r4: Not Found Failed to determine latest version of package hl7.at.fhir.elga.aps.r4 from server: https://packages2.fhir.org/packages Error fetching https://packages.fhir.org/hl7.at.fhir.elga.aps.r4: Not Found Failed to determine latest version of package hl7.at.fhir.elga.aps.r4 from server: https://packages.fhir.org Failed to determine latest version of package hl7.at.fhir.elga.aps.r4 from server: build.fhir.org Latest version of package hl7.at.fhir.elga.aps.r4 found locally is current - using that Check profiles & code systems (00:54.154 / 03:47.361, 1Gb) Check realm rules (00:00.007 / 03:47.369, 1Gb) Previous Version Comparison (00:00.000 / 03:47.369, 1Gb) Checking for Bundles to sign (00:00.057 / 03:47.427, 1Gb) Validating Resources (00:00.000 / 03:47.427, 1Gb) Processing Provenance Records (05:17.852 / 09:05.281, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 09:05.281, 2Gb) Generate Native Outputs (00:00.368 / 09:05.649, 2Gb) Run Template (00:09.789 / 09:15.439, 3Gb) Generate HTML Outputs (00:01.743 / 09:17.182, 3Gb) Value set 'http://hl7.org/fhir/uv/ips/ValueSet/problems-snomed-absent-unknown-uv-ips' at https://fhir.hl7.at/elga-iv-diabetes-r4/StructureDefinition/ProblemList-ips#ProblemList-ips.code not found Value set 'http://hl7.org/fhir/uv/ips/ValueSet/problems-snomed-absent-unknown-uv-ips' at https://fhir.hl7.at/elga-iv-diabetes-r4/StructureDefinition/ProblemList-ips#ProblemList-ips.code not found Value set 'http://hl7.org/fhir/uv/ips/ValueSet/problems-snomed-absent-unknown-uv-ips' at https://fhir.hl7.at/elga-iv-diabetes-r4/StructureDefinition/ProblemList-ips#ProblemList-ips.code not found Value set 'https://termgit.elga.gv.at/ValueSet/hl7-at-administrativegender-fhir-extension' at https://fhir.hl7.at/elga-iv-diabetes-r4/StructureDefinition/Subject-ips#Subject-ips.genderExtension not found Value set 'https://termgit.elga.gv.at/ValueSet/hl7-at-administrativegender-fhir-extension' at https://fhir.hl7.at/elga-iv-diabetes-r4/StructureDefinition/Subject-ips#Subject-ips.genderExtension not found Value set 'https://termgit.elga.gv.at/ValueSet/hl7-at-administrativegender-fhir-extension' at https://fhir.hl7.at/elga-iv-diabetes-r4/StructureDefinition/Subject-ips#Subject-ips.genderExtension not found XSLT Error: Error reported by XML parser: Content is not allowed in prolog. Exception generating xslt page /scratch/repo/temp/pages/_includes/mappings._md for _includes/mappings._md in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. (00:26.669 / 09:43.851, 1Gb) Generate Spreadsheets (00:00.002 / 09:43.854, 1Gb) Generate Summaries (00:10.647 / 09:54.502, 3Gb) Generating Summary Outputs (00:00.000 / 09:54.502, 3Gb) DB Cumulative Time invested: 00:00:00.835 Sending Usage Stats to Server (00:21.494 / 10:15.997, 6Gb) ## Memory (MB): Use = 7120, Free = 11887, Total = 19008, Max = 19008 (00:00.009 / 10:16.007, 6Gb) Reclaiming memory... (00:00.000 / 10:16.007, 6Gb) ## Memory (MB): Use = 814, Free = 18193, Total = 19008, Max = 19008 (00:01.536 / 10:17.544, 830Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 10:17.545, 830Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 10:17.545, 830Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 10:17.546, 830Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 10:17.546, 830Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.675 / 10:18.222, 846Mb) Jekyll: Generating... (00:00.000 / 10:18.222, 846Mb) Jekyll: done in 2.917 seconds. (00:02.916 / 10:21.138, 846Mb) Checking Output HTML (00:05.026 / 10:26.165, 2Gb) found 956 files (00:00.008 / 10:26.174, 2Gb) ......................................... ......................................... Publishing Content Failed: The