The jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content)
ActorDefinition/actor-consumer-uv-lab: ActorDefinition: Validated against fhir.ActorDefinition
Path
Severity
Message
ActorDefinition.jurisdiction[0] (l1/c1226)
information
Reference to deprecated ValueSet http://hl7.org/fhir/5.0/ValueSet/jurisdiction|5.0.0 (from http://tx.fhir.org/r4, see log) MSG_DEPRECATED
Resource
information
The resource ActorDefinition/actor-consumer-uv-lab could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)
ActorDefinition/actor-creator-uv-lab: ActorDefinition: Validated against fhir.ActorDefinition
Path
Severity
Message
ActorDefinition.jurisdiction[0] (l1/c1195)
information
Reference to deprecated ValueSet http://hl7.org/fhir/5.0/ValueSet/jurisdiction|5.0.0 (from http://tx.fhir.org/r4, see log) MSG_DEPRECATED
Resource
information
The resource ActorDefinition/actor-creator-uv-lab could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)
ActorDefinition/actor-repos-uv-lab: ActorDefinition: Validated against fhir.ActorDefinition
Path
Severity
Message
ActorDefinition.jurisdiction[0] (l1/c1175)
information
Reference to deprecated ValueSet http://hl7.org/fhir/5.0/ValueSet/jurisdiction|5.0.0 (from http://tx.fhir.org/r4, see log) MSG_DEPRECATED
Resource
information
The resource ActorDefinition/actor-repos-uv-lab could usefully have an OID assigned (OIDs are easy to assign - see https://build.fhir.org/ig/FHIR/fhir-tools-ig/CodeSystem-ig-parameters.html#ig-parameters-auto-oid-root)
There are no valid display names found for the code http://loinc.org#11502-2 for language(s) 'it-IT'. The display is 'Laboratory report' the default language display (from http://tx.fhir.org/r4)
There are no valid display names found for the code http://loinc.org#18719-5 for language(s) 'it-IT'. The display is 'Chemistry studies (set)' the default language display (from http://tx.fhir.org/r4)
There are no valid display names found for the code http://loinc.org#18729-4 for language(s) 'it-IT'. The display is 'Urinalysis studies (set)' the default language display (from http://tx.fhir.org/r4)
There are no valid display names found for the code http://loinc.org#14957-5 for language(s) 'it-IT'. The display is 'Microalbumin [Mass/volume] in Urine' the default language display (from http://tx.fhir.org/r4)
There are no valid display names found for the code http://loinc.org#11502-2 for language(s) 'cs-CZ'. The display is 'Laboratory report' the default language display (from http://tx.fhir.org/r4)
There are no valid display names found for the code http://loinc.org#18719-5 for language(s) 'cs-CZ'. The display is 'Chemistry studies (set)' the default language display (from http://tx.fhir.org/r4)
There are no valid display names found for the code http://loinc.org#26436-6 for language(s) 'cs-CZ'. The display is 'Laboratory studies (set)' the default language display (from http://tx.fhir.org/r4)
There are no valid display names found for the code http://loinc.org#18729-4 for language(s) 'cs-CZ'. The display is 'Urinalysis studies (set)' the default language display (from http://tx.fhir.org/r4)
There are no valid display names found for the code http://loinc.org#18719-5 for language(s) 'cs-CZ'. The display is 'Chemistry studies (set)' the default language display (from http://tx.fhir.org/r4)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)SD_PATH_SLICING_DEPRECATED
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)SD_PATH_SLICING_DEPRECATED
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)SD_PATH_SLICING_DEPRECATED
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)SD_PATH_SLICING_DEPRECATED
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)SD_PATH_SLICING_DEPRECATED
Unable to expand included value set 'http://hl7.org/fhir/uv/lab-report/ValueSet/obsCode-npu-uv-lab': Unable to expand imported value set: Error from http://tx.fhir.org/r4: Unable to provide support for code system http://npu-terminology.org (and Error from http://tx.fhir.org/r4: Unable to provide support for code system http://npu-terminology.org)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)SD_PATH_SLICING_DEPRECATED
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)SD_PATH_SLICING_DEPRECATED
It is reasonable for the 'example.org/lab-codes' code system to be (and remain) specified as 'experimental', so this is an expected message.
%Reference to experimental CodeSystem http://example.org/lab-codes% (15 uses)
New warning introduced by the publisher - see https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Regression.20in.20ConceptMap
%The modifier extension http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence from FHIR version 1.0 is not allowed to be used at this point% (0 uses)
Pre adoption of R5 rules for Document Bundles (see extensive discussion in https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Entry.20isn't.20reachable.20by.20traversing.20from.20first.20Bundle.20entry)
%isn't reachable by traversing forwards from the Composition. Only Provenance is approved to be used this way (R4 section 3.3.1)% (6 uses)
The IG does include examples of these profiles in the Bundle and additional examples, so it is not clear why they are stated as having no explicitly linked examples (but these are information messages, not warnings or errors)
INFORMATION: StructureDefinition.where(url = 'http://hl7.org/fhir/uv/lab-report/StructureDefinition/Patient-uv-lab'): The Implementation Guide contains no explicitly linked examples for this profile (1 uses)
INFORMATION: StructureDefinition.where(url = 'http://hl7.org/fhir/uv/lab-report/StructureDefinition/ServiceRequest-uv-lab'): The Implementation Guide contains no explicitly linked examples for this profile (1 uses)
INFORMATION: StructureDefinition.where(url = 'http://hl7.org/fhir/uv/lab-report/StructureDefinition/Specimen-uv-lab'): The Implementation Guide contains no explicitly linked examples for this profile (1 uses)
The NIBSC code system is not available in the IG publication tooling (IG Publisher, tx.fhir.org)
%Error from http://tx.fhir.org/r4: Unable to provide support for code system http://nibsc.org% (1 uses)
A definition for CodeSystem 'http://nibsc.org' could not be found, so the code cannot be validated (1 uses)
Unknown System 'http://nibsc.org' specified, so Concepts and Filters can't be checked (Details: A definition for CodeSystem 'http://nibsc.org' could not be found, so the code cannot be validated) (1 uses)
The NPU code system is not available (at present) in the IG publication tooling (IG Publisher, tx.fhir.org)
A definition for CodeSystem 'http://npu-terminology.org' could not be found, so the code cannot be validated (1 uses)
Error from http://tx.fhir.org/r4: Unable to provide support for code system http://npu-terminology.org (1 uses)
WARNING: ValueSet.where(id = 'obsCode-uv-lab'): Unable to expand imported value set http://hl7.org/fhir/uv/lab-report/ValueSet/obsCode-npu-uv-lab: Unable to expand imported value set: Error from http://tx.fhir.org/r4: Unable to provide support for code system http://npu-terminology.org (and Error from http://tx.fhir.org/r4: Unable to provide support for code system http://npu-terminology.org) (0 uses)
The code systems for 'urn:oid:2.16.840.1.113883.2.9.2.30.6.11', 'urn:oid:2.16.840.1.113883.5.129', 'urn:oid:2.16.840.1.113883.2.9.5.1.88' and 'urn:oid:1.2.203.24341.11.2.2' are not available in the IG publication tooling (IG Publisher, tx.fhir.org)
A definition for CodeSystem 'urn:oid:1.2.203.24341.11.2.2' could not be found, so the code cannot be validated (4 uses)
A definition for CodeSystem 'urn:oid:2.16.840.1.113883.2.9.2.30.6.11' could not be found, so the code cannot be validated (4 uses)
A definition for CodeSystem 'urn:oid:2.16.840.1.113883.2.9.5.1.88' could not be found, so the code cannot be validated (1 uses)
A definition for CodeSystem 'urn:oid:2.16.840.1.113883.5.129' could not be found, so the code cannot be validated (2 uses)
The code systems for http://pei.de and http://niaid.nih.gov are not available in the IG publication tooling (IG Publisher, tx.fhir.org)
Unknown System 'http://niaid.nih.gov' specified, so Concepts and Filters can't be checked (Details: A definition for CodeSystem 'http://niaid.nih.gov' could not be found, so the code cannot be validated) (1 uses)
Unknown System 'http://pei.de' specified, so Concepts and Filters can't be checked (Details: A definition for CodeSystem 'http://pei.de' could not be found, so the code cannot be validated) (1 uses)
The extension url for referencing the R5 DiagnosticReport.composition element is correct. Per discussion with Brian Postlethwaite, the IG Publisher is not checking if the extension URL is a backport style reference, which is needed to apply the correct logic (or it can use the backport package once it is completed).
WARNING: StructureDefinition/Bundle-uv-lab: StructureDefinition.snapshot.element[0].constraint[9]: dr-to-comp-link: Reference to an unknown extension - double check that the URL 'http://hl7.org/fhir/5.0/StructureDefinition/extension-DiagnosticReport.composition' is correct (1 uses)
The specified display names are the correct English Long Common Name terms, but the specified language for the Composition resource in the Bundle is 'cs-CZ' and this apparently is causing the display term validation to fail
WARNING: Bundle/SimpleChemistryResultReport: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.category[0].coding[0].display: Wrong Display Name 'Chemistry studies (set)' for http://loinc.org#18719-5. Valid display is one of 0 choices: 'Chemistry studies (set)' (en-US), 'Chemistry studies (set)' (en-US), 'estudios químicos:complejo:-:^paciente:Conjunto:' (es-AR), 'Klinische Chemie' (de-DE) or 'Biochimie [Autre] - ; Patient ; Statut' (fr-FR) (for the language(s) 'cs-CZ') (0 uses)
WARNING: Bundle/SimpleChemistryResultReport: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.section[0].code.coding[0].display: Wrong Display Name 'Laboratory studies (set)' for http://loinc.org#26436-6. Valid display is one of 0 choices: 'Laboratory studies (set)' (en-US), 'Laboratory studies (set)' (en-US), 'estudios de laboratorio:complejo:-:^paciente:Conjunto:' (es-AR), 'Laboruntersuchungen' (de-DE) or 'Biologie polyvalente [Autre] - ; Patient ; Statut' (fr-FR) (for the language(s) 'cs-CZ') (0 uses)
WARNING: Bundle/SimpleChemistryResultReport: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.section[0].section[0].code.coding[0].display: Wrong Display Name 'Urinalysis studies (set)' for http://loinc.org#18729-4. Valid display is one of 0 choices: 'Urinalysis studies (set)' (en-US), 'Urinalysis studies (set)' (en-US), 'estudios de laboratorio en orina:complejo:-:^paciente:Conjunto:' (es-AR), 'Urindiagnostik' (de-DE) or 'Examens urinaires - cristallurie [Autre] - ; Patient ; Statut' (fr-FR) (for the language(s) 'cs-CZ') (0 uses)
WARNING: Bundle/SimpleChemistryResultReport: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.section[0].section[1].code.coding[0].display: Wrong Display Name 'Chemistry studies (set)' for http://loinc.org#18719-5. Valid display is one of 0 choices: 'Chemistry studies (set)' (en-US), 'Chemistry studies (set)' (en-US), 'estudios químicos:complejo:-:^paciente:Conjunto:' (es-AR), 'Klinische Chemie' (de-DE) or 'Biochimie [Autre] - ; Patient ; Statut' (fr-FR) (for the language(s) 'cs-CZ') (0 uses)
WARNING: Bundle/SimpleChemistryResultReport: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.type.coding[0].display: Wrong Display Name 'Laboratory report' for http://loinc.org#11502-2. Valid display is one of 0 choices: 'Laboratory report' (en-US), 'Laboratory report' (en-US), 'Laboratory report' (en-US), 'Y' (en-US), 'Reporte de laboratorio: Paciente:Punto temporal:Tipo:Documento:' (es-MX), 'informe del laboratorio.total:hallazgo:duración del encuentro:^paciente:Múltiple:' (es-AR), 'Laborbericht' (de-DE), 'Compte rendu du laboratoire [Recherche] Patient ; Document' (fr-FR), 'Laboratoriumrapport [bevinding] (document)' (nl-NL) or 'Laborbefund' (de-AT) (for the language(s) 'cs-CZ') (0 uses)
The specified display names are the correct English Long Common Name terms, but the specified language for the Composition resource in the Bundle is 'it-IT', and this apparently is causing the display term validation to fail
WARNING: Bundle/IT-CDA2FHIR-17e2cad1-c3e3-4901-adb1-c35a0b82b883: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.category[0].coding[0].display: Wrong Display Name 'Chemistry studies (set)' for http://loinc.org#18719-5. Valid display is one of 0 choices: 'Chemistry studies (set)' (en-US), 'Chemistry studies (set)' (en-US), 'estudios químicos:complejo:-:^paciente:Conjunto:' (es-AR), 'Klinische Chemie' (de-DE) or 'Biochimie [Autre] - ; Patient ; Statut' (fr-FR) (for the language(s) 'it-IT') (0 uses)
WARNING: Bundle/IT-CDA2FHIR-17e2cad1-c3e3-4901-adb1-c35a0b82b883: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.section[0].code.coding[0].display: Wrong Display Name 'Urinalysis studies (set)' for http://loinc.org#18729-4. Valid display is one of 0 choices: 'Urinalysis studies (set)' (en-US), 'Urinalysis studies (set)' (en-US), 'estudios de laboratorio en orina:complejo:-:^paciente:Conjunto:' (es-AR), 'Urindiagnostik' (de-DE) or 'Examens urinaires - cristallurie [Autre] - ; Patient ; Statut' (fr-FR) (for the language(s) 'it-IT') (0 uses)
WARNING: Bundle/IT-CDA2FHIR-17e2cad1-c3e3-4901-adb1-c35a0b82b883: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.section[0].section[0].code.coding[0].display: Wrong Display Name 'Microalbumin [Mass/volume] in Urine' for http://loinc.org#14957-5. Valid display is one of 0 choices: 'Microalbumin [Mass/volume] in Urine' (en-US), 'Microalbumin [Mass/volume] in Urine' (en-US), 'Microalbumin Ur-mCnc' (en-US), 'Albumin, Urine' (en-US), 'Albúmina: Orina : Punto temporal: Concentración de masa: Cuantitativo: Límite de detección <= 20 mg / L' (es-MX), 'albúmina:concentración de masa:punto en el tiempo:orina:cuantitativo:límite de detección <= 20 mg/l' (es-AR), 'Microalbumin Ur-mCnc' (pt-BR), 'Albumin (Mikroalbumin) [Masse/Volumen] in Urin' (de-DE), 'Albumine [Masse/Volume] Urine ; Numérique ; Limite de détection<=20mg/L' (fr-FR), 'Albumine [massa/volume] in urine d.m.v. detectielimiet <= 20 mg/L' (nl-NL), 'Albumin /U' (de-AT), 'Мікроальбумін [Маса/об'єм] в сечі' (uk-UA), 'Мікроальбумін Сеч-МасКонц' (uk-UA) or 'Альбумін Межа визначення <= 20 мг/л (Сеч) [Маса/об'єм]' (uk-UA) (for the language(s) 'it-IT') (0 uses)
WARNING: Bundle/IT-CDA2FHIR-17e2cad1-c3e3-4901-adb1-c35a0b82b883: Bundle.entry[0].resource/*Composition/26032a57-083a-4ddf-b019-e566ae02f740*/.type.coding[0].display: Wrong Display Name 'Laboratory report' for http://loinc.org#11502-2. Valid display is one of 0 choices: 'Laboratory report' (en-US), 'Laboratory report' (en-US), 'Laboratory report' (en-US), 'Y' (en-US), 'Reporte de laboratorio: Paciente:Punto temporal:Tipo:Documento:' (es-MX), 'informe del laboratorio.total:hallazgo:duración del encuentro:^paciente:Múltiple:' (es-AR), 'Laborbericht' (de-DE), 'Compte rendu du laboratoire [Recherche] Patient ; Document' (fr-FR), 'Laboratoriumrapport [bevinding] (document)' (nl-NL) or 'Laborbefund' (de-AT) (for the language(s) 'it-IT') (0 uses)
This issue won't be fixed at this time - see https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/QA.20error.20with.20ActorDefinition.20in.20R4.20IG
%ActorDefinition.type: The value provided ('system') was not found in the value set 'Example Scenario Actor Type'% (0 uses)
We do not have an OID root for this IG and are not anticipating assigning resource OIDs at this time
%Resource: This resource could usefully have an OID assigned% (0 uses)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)
The discriminator type 'pattern' is deprecated in R5+. For future compatibility, you could consider using type=value with a pattern[x] instead (if this is not an inherited slicing)
hl7.fhir.uv.lab-report
