genotype
type: StructureDefinition
node role: treeRoot
id:
  v: genotype
language:
  v: en
text:
  status:
    v: extensions
  div:
    v: Generated Narrative: StructureDefinition genotype Name Flags Card. Type Description & Constraints<img src="[binary]" alt="doco" style="background-color: inherit"/> MolecularDefinition 0..* MolecularDefinition Definitional content for a molecular entity #xD; type S 1..1 CodeableConcept Classification of the molecule into types other than those defined by moleculeType Binding: Molecule Type ValueSet (required) #xD; topology 0..* CodeableConcept The structural topology of the molecular entity (e.g., linear, circular) Binding: Topology ValueSet (required) #xD; member S 0..* Reference(Allele | Haplotype) Constituents of an aggregate molecular concept (e.g., haplotype, genotype) #xD; location 0..0 A defined location on a molecular entity #xD; representation #xD; extracted 0..0 A molecular entity that is represented as a portion of a different entity #xD; repeated 0..0 A representation as a repeated motif #xD; concatenated 0..0 An ordered concatenation of molecular entities #xD; relative 0..0 A molecular entity represented as an ordered series of edits on a specified starting entity #xD; <img src="[binary]" alt="doco" style="background-color: inherit"/> Documentation for this format
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/structuredefinition-wg
    l: structuredefinition-wg
  value: Code
    v: cg
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status
    l: structuredefinition-standards-status
  value: Code
    v: informative
    extension:
      url:
        v: http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom
        l: structuredefinition-conformance-derivedFrom
      value: Canonical
        v: http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types
        l: hl7.fhir.uv.molecular-definition-data-types
url:
  v: http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/genotype
  l: genotype
version:
  v: 1.0.0-ballot1
name:
  v: Genotype
status:
  v: draft
experimental:
  v: true
date:
  v: 2026-03-24T17:16:29+00:00
publisher:
  v: HL7 International / Clinical Genomics
contact:
  name:
    v: HL7 International / Clinical Genomics
  telecom:
    system:
      v: url
    value:
      v: http://www.hl7.org/Special/committees/clingenomics
  telecom:
    system:
      v: email
description:
  v: Genotype profile of MolecularDefinition
jurisdiction:
  coding:
    system:
      v: http://unstats.un.org/unsd/methods/m49/m49.htm
      l: m49.htm
    code:
      v: 001
    display:
      v: World
fhir version:
  v: 6.0.0-ballot3
mapping:
  identity:
    v: w5
  uri:
    v: http://hl7.org/fhir/fivews
    l: fivews
  name:
    v: FiveWs Pattern Mapping
mapping:
  identity:
    v: rim
  uri:
    v: http://hl7.org/v3
    l: v3
  name:
    v: RIM Mapping
kind:
  v: resource
abstract:
  v: false
type:
  v: MolecularDefinition
  l: MolecularDefinition
base definition:
  v: http://hl7.org/fhir/StructureDefinition/MolecularDefinition
  l: MolecularDefinition
derivation:
  v: constraint
snapshot:
  extension:
    url:
      v: http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version
      l: snapshot-base-version
    value: String
      v: 6.0.0-ballot3
  element:
    id:
      v: MolecularDefinition
    path:
      v: MolecularDefinition
    short:
      v: Definitional content for a molecular entity
    definition:
      v: Definitional content for a molecular entity, such as a nucleotide or protein sequence.
    min:
      v: 0
    max:
      v: *
    base:
      path:
        v: MolecularDefinition
      min:
        v: 0
      max:
        v: *
    constraint:
      key:
        v: dom-2
      severity:
        v: error
      human:
        v: If the resource is contained in another resource, it SHALL NOT contain nested Resources
      expression:
        v: contained.contained.empty()
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        l: DomainResource
    constraint:
      key:
        v: dom-3
      severity:
        v: error
      human:
        v: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
      expression:
        v: contained.where((('#'+id.trace('id') in %resource.descendants().select(reference | as(uri))) or descendants().where(reference='#' | as(uri)='#').exists()).not()).trace('unmatched', id).empty()
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        l: DomainResource
    constraint:
      key:
        v: dom-4
      severity:
        v: error
      human:
        v: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
      expression:
        v: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        l: DomainResource
    constraint:
      key:
        v: dom-5
      severity:
        v: error
      human:
        v: If a resource is contained in another resource, it SHALL NOT have a security label
      expression:
        v: contained.meta.security.empty()
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        l: DomainResource
    constraint:
      extension:
        value: Boolean
      extension:
        value: Markdown
      key:
        v: dom-6
      severity:
        v: warning
      human:
        v: A resource should have narrative for robust management
      expression:
        v: text.`div`.exists()
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        l: DomainResource
    must support:
      v: false
    is modifier:
      v: false
    is summary:
      v: false
    mapping:
      identity:
        v: rim
      map:
        v: Entity, Role, or Act
    mapping:
      identity:
        v: w5
      map:
        v: clinical.diagnostics

Boolean
v: true

Markdown
v: When a resource has no narrative, only systems that fully understand the data can display the resource to a human safely. Including a human readable representation in the resource makes for a much more robust eco-system and cheaper handling of resources by intermediary systems. Some ecosystems restrict distribution of resources to only those systems that do fully understand the resources, and as a consequence implementers may believe that the narrative is superfluous. However experience shows that such eco-systems often open up to new participants over time.

id:
  v: MolecularDefinition.id
path:
  v: MolecularDefinition.id
short:
  v: Logical id of this artifact
definition:
  v: The logical id of the resource, as used in the URL for the resource. Once assigned, this value never changes.
comment:
  v: Within the context of the FHIR RESTful interactions, the resource has an id except for cases like the create and conditional update. Otherwise, the use of the resouce id depends on the given use case.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Resource.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
      l: structuredefinition-fhir-type
    value: Url
      v: id
      l: id
  code:
    v: http://hl7.org/fhirpath/System.String
    l: System.String
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.meta
path:
  v: MolecularDefinition.meta
short:
  v: Metadata about the resource
definition:
  v: The metadata about the resource. This is content that is maintained by the infrastructure. Changes to the content might not always be associated with version changes to the resource.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Resource.meta
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Meta
    l: Meta
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.implicitRules
path:
  v: MolecularDefinition.implicitRules
short:
  v: A set of rules under which this content was created
definition:
  v: A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content. Often, this is a reference to an implementation guide that defines the special rules along with other profiles etc.
comment:
  v: Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. Often, when used, the URL is a reference to an implementation guide that defines these special rules as part of its narrative along with other profiles, value sets, etc.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Resource.implicitRules
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: uri
    l: uri
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: true
is modifier reason:
  v: This element is labeled as a modifier because the implicit rules may provide additional knowledge about the resource that modifies its meaning or interpretation
is summary:
  v: true

id:
  v: MolecularDefinition.language
path:
  v: MolecularDefinition.language
short:
  v: Language of the resource content
definition:
  v: The base language in which the resource is written.
comment:
  v: Language is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource. Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Resource.language
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: code
    l: code
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: false
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
      l: elementdefinition-bindingName
    value: String
      v: Language
  strength:
    v: required
  description:
    v: IETF language tag for a human language
  value set:
    v: http://hl7.org/fhir/ValueSet/all-languages|6.0.0-ballot3
    l: http://hl7.org/fhir/ValueSet/all-languages
  additional:
    purpose:
      v: starter
    value set:
      v: http://hl7.org/fhir/ValueSet/languages|6.0.0-ballot3
      l: http://hl7.org/fhir/ValueSet/languages

id:
  v: MolecularDefinition.text
path:
  v: MolecularDefinition.text
short:
  v: Text summary of the resource, for human interpretation
definition:
  v: A human-readable narrative that contains a summary of the resource and can be used to represent the content of the resource to a human. The narrative need not encode all the structured data, but is required to contain sufficient detail to make it "clinically safe" for a human to just read the narrative. Resource definitions may define what content should be represented in the narrative to ensure clinical safety.
comment:
  v: Contained resources do not have a narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded information is added later.
alias:
  v: narrative
alias:
  v: html
alias:
  v: xhtml
alias:
  v: display
min:
  v: 0
max:
  v: 1
base:
  path:
    v: DomainResource.text
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Narrative
    l: Narrative
condition:
  v: dom-6
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: Act.text?

id:
  v: MolecularDefinition.contained
path:
  v: MolecularDefinition.contained
short:
  v: Contained, inline Resources
definition:
  v: These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, nor can they have their own independent transaction scope. This is allowed to be a Parameters resource if and only if it is referenced by a resource that provides context/meaning.
comment:
  v: This should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again. Contained resources may have profiles and tags in their meta elements, but SHALL NOT have security labels. Contained resources may be a resource type defined in the FHIR specification, or an [additional resource](http://build.fhir.org/resource.html#additional).
alias:
  v: inline resources
alias:
  v: anonymous resources
alias:
  v: contained resources
min:
  v: 0
max:
  v: *
base:
  path:
    v: DomainResource.contained
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Resource
    l: Resource
condition:
  v: dom-2
condition:
  v: dom-4
condition:
  v: dom-3
condition:
  v: dom-5
must support:
  v: false
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.extension
path:
  v: MolecularDefinition.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: DomainResource.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.modifierExtension
path:
  v: MolecularDefinition.modifierExtension
short:
  v: Extensions that cannot be ignored
definition:
  v: May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: DomainResource.modifierExtension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the resource that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.identifier
path:
  v: MolecularDefinition.identifier
short:
  v: Unique ID of an instance
definition:
  v: A unique identifier for a particular instance of this resource.
min:
  v: 0
max:
  v: *
base:
  path:
    v: MolecularDefinition.identifier
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Identifier
    l: Identifier
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.identifier

id:
  v: MolecularDefinition.description
path:
  v: MolecularDefinition.description
short:
  v: Description of the Molecular Definition instance
definition:
  v: A description of the molecular entity in a human friendly format.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.description
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: markdown
    l: markdown
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: false

id:
  v: MolecularDefinition.moleculeType
path:
  v: MolecularDefinition.moleculeType
short:
  v: The type of molecule (e.g., DNA, RNA, amino acid)
definition:
  v: The type of molecule (e.g., DNA, RNA, amino acid). This is a broad concept that refers to the general physical composition of the molecule, intended to facilitate searching and to provide domain context for profiles and instances. The terminology binding may be expanded to support additional types of molecules in the future (e.g., peptide nucleic acids, oligosaccharides).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.moleculeType
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.type
path:
  v: MolecularDefinition.type
short:
  v: Classification of the molecule into types other than those defined by moleculeType
definition:
  v: Classifications of an instance of the resource into arbitrary types, based on domain semantics. For example, this element could indicate that an instance of moleculeType 'RNA' could have a type of 'mRNA' or 'siRNA'.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: MolecularDefinition.type
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: true
binding:
  strength:
    v: required
  value set:
    v: http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/molecule-type
    l: molecule-type

id:
  v: MolecularDefinition.topology
path:
  v: MolecularDefinition.topology
short:
  v: The structural topology of the molecular entity (e.g., linear, circular)
definition:
  v: The structural topology of the molecular entity. For sequences (e.g., DNA), this could specify 'linear' and 'circular'. More complex entities might be branched or have a quaternary structure.
min:
  v: 0
max:
  v: *
base:
  path:
    v: MolecularDefinition.topology
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true
binding:
  strength:
    v: required
  value set:
    v: http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/topology
    l: topology

id:
  v: MolecularDefinition.member
path:
  v: MolecularDefinition.member
short:
  v: Constituents of an aggregate molecular concept (e.g., haplotype, genotype)
definition:
  v: Constituents of an aggregate molecular concept (e.g., haplotype, genotype).
min:
  v: 0
max:
  v: *
base:
  path:
    v: MolecularDefinition.member
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Reference
    l: Reference
  target profile:
    v: http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/allele
    l: allele
  target profile:
    v: http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/haplotype
    l: haplotype
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.location
path:
  v: MolecularDefinition.location
short:
  v: A defined location on a molecular entity
definition:
  v: A defined location on a molecular entity. Location definitions may vary with respect to coordinate space and precision or level of granularity.
min:
  v: 0
max:
  v: 0
base:
  path:
    v: MolecularDefinition.location
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: BackboneElement
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  v: The normalization method used for determining a location within the coordinate system
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  v: The start location of the interval
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  v: The strand at the coordinateInterval
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    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.focus
path:
  v: MolecularDefinition.representation.focus
short:
  v: The domain concept that is the focus of a given instance of the representation
definition:
  v: The domain concept that is the focus of the representation. This element is used to disambiguate the representations of the “reference” and the “alternate” alleles at a given location, for example.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.focus
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    v: 0
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    v: 1
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
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    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children
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    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.code
path:
  v: MolecularDefinition.representation.code
short:
  v: A code (e.g., sequence accession number) used to represent a molecular entity
definition:
  v: A code (e.g., sequence accession number) used to represent a molecular entity.
min:
  v: 0
max:
  v: *
base:
  path:
    v: MolecularDefinition.representation.code
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    v: 0
  max:
    v: *
type:
  code:
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    v: error
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    v: All FHIR elements must have a @value or children
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    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.literal
path:
  v: MolecularDefinition.representation.literal
short:
  v: A molecular entity defined as a string literal
definition:
  v: A molecular entity defined as a string literal.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.literal
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    v: 0
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    v: 1
type:
  code:
    v: BackboneElement
    l: BackboneElement
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    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children or both
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    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.literal.id
path:
  v: MolecularDefinition.representation.literal.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
      l: structuredefinition-fhir-type
    value: Url
      v: string
      l: string
  code:
    v: http://hl7.org/fhirpath/System.String
    l: System.String
condition:
  v: ele-1
is modifier:
  v: false
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  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.literal.extension
path:
  v: MolecularDefinition.representation.literal.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
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  v: false
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  v: false
mapping:
  identity:
    v: rim
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    v: n/a

id:
  v: MolecularDefinition.representation.literal.modifierExtension
path:
  v: MolecularDefinition.representation.literal.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
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alias:
  v: user content
alias:
  v: modifiers
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  v: 0
max:
  v: *
base:
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    v: 0
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    v: *
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    v: All FHIR elements must have a @value or children
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    v: hasValue() or (children().count() > id.count())
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  v: true
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  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.literal.encoding
path:
  v: MolecularDefinition.representation.literal.encoding
short:
  v: The encoding used in the value
definition:
  v: The encoding used for the expression of the entity. For a primary sequence, this element represents the alphabet used (e.g., 1 character DNA without ambiguity codes, 3 character amino acid codes).
min:
  v: 0
max:
  v: 1
base:
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    v: 0
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    v: 1
type:
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    v: error
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    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
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  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.literal.value
path:
  v: MolecularDefinition.representation.literal.value
short:
  v: A string literal representation of the molecular entity, using the encoding specified in encoding
definition:
  v: A string literal representation of the molecular entity, using a specific encoding. For example, this may be the primary sequence of a strand of DNA.
min:
  v: 1
max:
  v: 1
base:
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    v: 1
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    v: 1
type:
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    v: All FHIR elements must have a @value or children
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    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
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  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.resolvable
path:
  v: MolecularDefinition.representation.resolvable
short:
  v: A resolvable representation of a molecular entity (e.g., URI, attached and formatted file)
definition:
  v: A resolvable representation of a molecular entity, which may be specified as a URI and/or attached document (in a defined format).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.resolvable
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Reference
    l: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/DocumentReference|6.0.0-ballot3
    l: http://hl7.org/fhir/StructureDefinition/DocumentReference
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.extracted
path:
  v: MolecularDefinition.representation.extracted
short:
  v: A molecular entity that is represented as a portion of a different entity
definition:
  v: A molecular entity that is represented as a portion of a different entity. For example, this element can represent a subsequence (e.g., genetic region) that is part of and conceptually extracted from a longer sequence (e.g., chromosome sequence). The “parent” entity is specified in startingMolecule and the location of the intended molecular entity on the parent entity is defined by coordinateInterval.
min:
  v: 0
max:
  v: 0
base:
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    v: MolecularDefinition.representation.extracted
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    v: 0
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    v: 1
type:
  code:
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    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children or both
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    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
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  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.extracted.id
path:
  v: MolecularDefinition.representation.extracted.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
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    v: 0
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    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
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      v: string
      l: string
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    v: http://hl7.org/fhirpath/System.String
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condition:
  v: ele-1
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  v: false
mapping:
  identity:
    v: rim
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    v: n/a

id:
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path:
  v: MolecularDefinition.representation.extracted.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
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  v: 0
max:
  v: *
base:
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    v: 0
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    v: *
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  code:
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    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
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  v: false
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  v: false
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    v: rim
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    v: n/a

id:
  v: MolecularDefinition.representation.extracted.modifierExtension
path:
  v: MolecularDefinition.representation.extracted.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
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alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
  v: *
base:
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    v: 0
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type:
  code:
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    v: error
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    v: All FHIR elements must have a @value or children
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  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
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  v: true
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    v: rim
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id:
  v: MolecularDefinition.representation.extracted.startingMolecule
path:
  v: MolecularDefinition.representation.extracted.startingMolecule
short:
  v: The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived
definition:
  v: A reference to the molecular entity that serves as the conceptual 'parent' from which the intended entity is derived. For example, this could be a chromosome sequence on which a coordinateInterval is defined.
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  v: 1
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  v: 1
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    v: 1
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    v: 1
type:
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    l: http://hl7.org/fhir/StructureDefinition/MolecularDefinition
constraint:
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    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children
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  v: false
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  v: false
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  v: true

id:
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path:
  v: MolecularDefinition.representation.extracted.coordinateInterval
short:
  v: The interval on startingMolecule that defines the portion to be extracted to produce the intended entity
definition:
  v: The interval on startingMolecule that defines the portion to be extracted in order to create the intended entity.
min:
  v: 0
max:
  v: 1
base:
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  v: false
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  v: false
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id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.id
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.id
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  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
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  v: 0
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  v: 1
base:
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    v: 1
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  extension:
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      v: string
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condition:
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  v: false
mapping:
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    v: rim
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    v: n/a

id:
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path:
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short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
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alias:
  v: user content
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  v: *
base:
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    v: 0
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    v: error
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    v: All FHIR elements must have a @value or children
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    v: hasValue() or (children().count() > id.count())
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id:
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path:
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short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
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alias:
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alias:
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max:
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base:
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  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
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    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem
short:
  v: The coordinate system used to define the location
definition:
  v: The coordinate system used to define the location, which may vary depending on application or context of use.
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  v: 0
max:
  v: 1
base:
  path:
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    v: http://hl7.org/fhir/StructureDefinition/Element
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must support:
  v: false
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  v: false
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  v: true

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.id
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.id
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  v: xmlAttr
short:
  v: Unique id for inter-element referencing
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  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
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  v: 0
max:
  v: 1
base:
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condition:
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is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.extension
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.modifierExtension
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
  v: *
base:
  path:
    v: BackboneElement.modifierExtension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.system
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.system
short:
  v: The type of coordinate system used
definition:
  v: A definition of the coordinate system. Examples include 1-based character counting, and 0-based interval counting.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.system
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
      l: elementdefinition-bindingName
    value: String
      v: LL5323-2
  strength:
    v: extensible
  description:
    v: Coordinate system.
  value set:
    v: http://loinc.org/vs/LL5323-2
    l: LL5323-2

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.origin
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.origin
short:
  v: The location of the origin of the coordinate system
definition:
  v: The location of the origin (0 or 1, depending on the coordinate system). For example, this could specify the origin is at the start of the sequence (e.g., 5’ end or N-terminus), the beginning of a designated feature (e.g., A in the ATG translation initiation codon), or the end of a designated feature (e.g., 3’ end of an exon, from which an offset is calculated into the following intron).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.origin
  min:
    v: 0
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    v: 1
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.normalizationMethod
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.normalizationMethod
short:
  v: The normalization method used for determining a location within the coordinate system
definition:
  v: The normalization method used for determining a location within the coordinate system. Examples include left shift (e.g., VCF), right shift (e.g., HGVS), or fully justified (e.g., VOCA).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.normalizationMethod
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    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.start[x]
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.start[x]
short:
  v: The start location of the interval
definition:
  v: The start location of the interval expressed as a precise coordinate (Quantity) or expressed as a range (Range) that is defined by low (range start) and high (range end). Open-ended ranges, where one end is unbounded, may be supported.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.extracted.coordinateInterval.start[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Quantity
    l: Quantity
type:
  code:
    v: Range
    l: Range
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.extracted.coordinateInterval.end[x]
path:
  v: MolecularDefinition.representation.extracted.coordinateInterval.end[x]
short:
  v: The end location of the interval
definition:
  v: The end location of the interval expressed as a precise coordinate (Quantity) or as a range (Range) that is defined by low (range start) and high (range end). Open-ended ranges, where one end is unbounded, may be supported..
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.extracted.coordinateInterval.end[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Quantity
    l: Quantity
type:
  code:
    v: Range
    l: Range
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.extracted.reverseComplement
path:
  v: MolecularDefinition.representation.extracted.reverseComplement
short:
  v: A flag that indicates whether the extracted sequence should be reverse complemented
definition:
  v: A flag that indicates whether the extracted sequence should be reverse complemented in order to produce the intended entity. This element is only relevant to molecular entities that support the concept of reverse complement (e.g., double stranded DNA).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.extracted.reverseComplement
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: boolean
    l: boolean
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.repeated
path:
  v: MolecularDefinition.representation.repeated
short:
  v: A representation as a repeated motif
definition:
  v: A representation of a molecular entity that is expressed as a number of copies of a repeated motif.
min:
  v: 0
max:
  v: 0
base:
  path:
    v: MolecularDefinition.representation.repeated
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: BackboneElement
    l: BackboneElement
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children or both
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.repeated.id
path:
  v: MolecularDefinition.representation.repeated.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
      l: structuredefinition-fhir-type
    value: Url
      v: string
      l: string
  code:
    v: http://hl7.org/fhirpath/System.String
    l: System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.repeated.extension
path:
  v: MolecularDefinition.representation.repeated.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.repeated.modifierExtension
path:
  v: MolecularDefinition.representation.repeated.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
  v: *
base:
  path:
    v: BackboneElement.modifierExtension
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    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.repeated.sequenceMotif
path:
  v: MolecularDefinition.representation.repeated.sequenceMotif
short:
  v: The motif that is repeated
definition:
  v: The motif that is repeated in tandem, which ultimately defines the intended molecular entity.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.repeated.sequenceMotif
  min:
    v: 1
  max:
    v: 1
type:
  code:
    v: Reference
    l: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/MolecularDefinition|6.0.0-ballot3
    l: http://hl7.org/fhir/StructureDefinition/MolecularDefinition
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.repeated.copyCount
path:
  v: MolecularDefinition.representation.repeated.copyCount
short:
  v: The number of copies of the motif
definition:
  v: The number of times the motif is repeated to create the intended molecular entity.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.repeated.copyCount
  min:
    v: 1
  max:
    v: 1
type:
  code:
    v: integer
    l: integer
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.concatenated
path:
  v: MolecularDefinition.representation.concatenated
short:
  v: An ordered concatenation of molecular entities
definition:
  v: A representation comprised of an ordered concatenation of two or more molecular entities.
min:
  v: 0
max:
  v: 0
base:
  path:
    v: MolecularDefinition.representation.concatenated
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: BackboneElement
    l: BackboneElement
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children or both
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.concatenated.id
path:
  v: MolecularDefinition.representation.concatenated.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
      l: structuredefinition-fhir-type
    value: Url
      v: string
      l: string
  code:
    v: http://hl7.org/fhirpath/System.String
    l: System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.concatenated.extension
path:
  v: MolecularDefinition.representation.concatenated.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.concatenated.modifierExtension
path:
  v: MolecularDefinition.representation.concatenated.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
  v: *
base:
  path:
    v: BackboneElement.modifierExtension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.concatenated.sequenceElement
path:
  v: MolecularDefinition.representation.concatenated.sequenceElement
short:
  v: One of the concatenated entities
definition:
  v: One of the concatenated entities within the concatenated representation.
comment:
  v: At least two elements are required to represent a concatenated sequence.
min:
  v: 1
max:
  v: *
base:
  path:
    v: MolecularDefinition.representation.concatenated.sequenceElement
  min:
    v: 1
  max:
    v: *
type:
  code:
    v: BackboneElement
    l: BackboneElement
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children or both
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.concatenated.sequenceElement.id
path:
  v: MolecularDefinition.representation.concatenated.sequenceElement.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
      l: structuredefinition-fhir-type
    value: Url
      v: string
      l: string
  code:
    v: http://hl7.org/fhirpath/System.String
    l: System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.concatenated.sequenceElement.extension
path:
  v: MolecularDefinition.representation.concatenated.sequenceElement.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
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    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.concatenated.sequenceElement.modifierExtension
path:
  v: MolecularDefinition.representation.concatenated.sequenceElement.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
  v: modifiers
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  v: 0
max:
  v: *
base:
  path:
    v: BackboneElement.modifierExtension
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    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.concatenated.sequenceElement.sequence
path:
  v: MolecularDefinition.representation.concatenated.sequenceElement.sequence
short:
  v: A reference to the sequence that defines this specific concatenated element
definition:
  v: A reference to the sequence that defines this specific concatenated element.
min:
  v: 1
max:
  v: 1
base:
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  min:
    v: 1
  max:
    v: 1
type:
  code:
    v: Reference
    l: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/MolecularDefinition|6.0.0-ballot3
    l: http://hl7.org/fhir/StructureDefinition/MolecularDefinition
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex
path:
  v: MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex
short:
  v: The ordinal index of the element within the concatenated representation
definition:
  v: The ordinal index of the element within the concatenated representation.
comment:
  v: 0 or 1 based indices are possible, could potentially skip numbers in the sequence, suggest implementers sort numerically prior to concatenating
min:
  v: 1
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex
  min:
    v: 1
  max:
    v: 1
type:
  code:
    v: integer
    l: integer
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative
path:
  v: MolecularDefinition.representation.relative
short:
  v: A molecular entity represented as an ordered series of edits on a specified starting entity
definition:
  v: A molecular entity represented as an ordered series of edits on a specified starting entity. This representation can be used to define one entity relative to another.
min:
  v: 0
max:
  v: 0
base:
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    v: 0
  max:
    v: 1
type:
  code:
    v: BackboneElement
    l: BackboneElement
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children or both
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.id
path:
  v: MolecularDefinition.representation.relative.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
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      v: string
      l: string
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    v: http://hl7.org/fhirpath/System.String
    l: System.String
condition:
  v: ele-1
is modifier:
  v: false
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  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.relative.extension
path:
  v: MolecularDefinition.representation.relative.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
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  v: 0
max:
  v: *
base:
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    v: 0
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  code:
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    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.relative.modifierExtension
path:
  v: MolecularDefinition.representation.relative.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
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min:
  v: 0
max:
  v: *
base:
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    v: 0
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    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
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  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.relative.startingMolecule
path:
  v: MolecularDefinition.representation.relative.startingMolecule
short:
  v: The molecular entity on which edits will be applied
definition:
  v: The molecular entity that serves as the starting point, on which edits will be applied.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.startingMolecule
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    v: 1
  max:
    v: 1
type:
  code:
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    l: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/MolecularDefinition|6.0.0-ballot3
    l: http://hl7.org/fhir/StructureDefinition/MolecularDefinition
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit
path:
  v: MolecularDefinition.representation.relative.edit
short:
  v: A defined edit (change) to be applied
definition:
  v: A defined edit (change) to be applied to the molecular entity.
comment:
  v: Edits are applied sequentially. The sequence that results from one edit operation is used as the 'starting' sequence of the next edit operation.
min:
  v: 0
max:
  v: *
base:
  path:
    v: MolecularDefinition.representation.relative.edit
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    v: 0
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    v: *
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  code:
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    l: BackboneElement
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    v: ele-1
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    v: error
  human:
    v: All FHIR elements must have a @value or children or both
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    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
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  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit.id
path:
  v: MolecularDefinition.representation.relative.edit.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
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    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
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    value: Url
      v: string
      l: string
  code:
    v: http://hl7.org/fhirpath/System.String
    l: System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.relative.edit.extension
path:
  v: MolecularDefinition.representation.relative.edit.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
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alias:
  v: user content
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  v: 0
max:
  v: *
base:
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    v: 0
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    v: error
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    v: All FHIR elements must have a @value or children
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    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
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    v: rim
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    v: n/a

id:
  v: MolecularDefinition.representation.relative.edit.modifierExtension
path:
  v: MolecularDefinition.representation.relative.edit.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
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alias:
  v: user content
alias:
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min:
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max:
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base:
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    v: 0
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type:
  code:
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    l: Extension
constraint:
  key:
    v: ele-1
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    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
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    v: http://hl7.org/fhir/StructureDefinition/Element
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  v: true
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  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.relative.edit.editOrder
path:
  v: MolecularDefinition.representation.relative.edit.editOrder
short:
  v: Defines the order of edits when multiple edits are to be applied to the startingMolecule
definition:
  v: Defines the order of edits when multiple edits are to be applied to the startingMolecule. This is important when edits may overlap (intervals) or when edits change the length of the entity.
min:
  v: 0
max:
  v: 1
base:
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    v: MolecularDefinition.representation.relative.edit.editOrder
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    v: 0
  max:
    v: 1
type:
  code:
    v: integer
    l: integer
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: false

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval
short:
  v: The interval on startingMolecule that defines the portion to be extracted to produce the intended entity
definition:
  v: The interval on startingMolecule that defines the portion to be extracted in order to create the intended entity.
min:
  v: 0
max:
  v: 1
base:
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type:
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    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children or both
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    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
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  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.id
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
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  v: 0
max:
  v: 1
base:
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    v: Element.id
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    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
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    value: Url
      v: string
      l: string
  code:
    v: http://hl7.org/fhirpath/System.String
    l: System.String
condition:
  v: ele-1
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  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.extension
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
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alias:
  v: user content
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max:
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    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
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id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.modifierExtension
path:
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short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
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alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
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base:
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type:
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constraint:
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    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
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  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem
short:
  v: The coordinate system used to define the location
definition:
  v: The coordinate system used to define the location, which may vary depending on application or context of use.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: BackboneElement
    l: BackboneElement
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children or both
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.id
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
      l: structuredefinition-fhir-type
    value: Url
      v: string
      l: string
  code:
    v: http://hl7.org/fhirpath/System.String
    l: System.String
condition:
  v: ele-1
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.extension
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children
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    v: hasValue() or (children().count() > id.count())
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is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.modifierExtension
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://build.fhir.org/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
  v: *
base:
  path:
    v: BackboneElement.modifierExtension
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    v: 0
  max:
    v: *
type:
  code:
    v: Extension
    l: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.system
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.system
short:
  v: The type of coordinate system used
definition:
  v: A definition of the coordinate system. Examples include 1-based character counting, and 0-based interval counting.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.system
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    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
      l: elementdefinition-bindingName
    value: String
      v: LL5323-2
  strength:
    v: extensible
  description:
    v: Coordinate system.
  value set:
    v: http://loinc.org/vs/LL5323-2
    l: LL5323-2

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.origin
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.origin
short:
  v: The location of the origin of the coordinate system
definition:
  v: The location of the origin (0 or 1, depending on the coordinate system). For example, this could specify the origin is at the start of the sequence (e.g., 5’ end or N-terminus), the beginning of a designated feature (e.g., A in the ATG translation initiation codon), or the end of a designated feature (e.g., 3’ end of an exon, from which an offset is calculated into the following intron).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.origin
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
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    v: error
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    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.normalizationMethod
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.normalizationMethod
short:
  v: The normalization method used for determining a location within the coordinate system
definition:
  v: The normalization method used for determining a location within the coordinate system. Examples include left shift (e.g., VCF), right shift (e.g., HGVS), or fully justified (e.g., VOCA).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.normalizationMethod
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
    l: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
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    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
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must support:
  v: false
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  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.start[x]
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.start[x]
short:
  v: The start location of the interval
definition:
  v: The start location of the interval expressed as a precise coordinate (Quantity) or expressed as a range (Range) that is defined by low (range start) and high (range end). Open-ended ranges, where one end is unbounded, may be supported.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.edit.coordinateInterval.start[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Quantity
    l: Quantity
type:
  code:
    v: Range
    l: Range
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.end[x]
path:
  v: MolecularDefinition.representation.relative.edit.coordinateInterval.end[x]
short:
  v: The end location of the interval
definition:
  v: The end location of the interval expressed as a precise coordinate (Quantity) or as a range (Range) that is defined by low (range start) and high (range end). Open-ended ranges, where one end is unbounded, may be supported..
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.edit.coordinateInterval.end[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Quantity
    l: Quantity
type:
  code:
    v: Range
    l: Range
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
is modifier:
  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit.replacementMolecule
path:
  v: MolecularDefinition.representation.relative.edit.replacementMolecule
short:
  v: The molecular entity that serves as the replacement in the edit operation
definition:
  v: The molecular entity that serves as the replacement in the edit operation. After the edit has been applied, the state of the entity at the specified coordinateInterval is defined by the state of the replacementMolecule.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.edit.replacementMolecule
  min:
    v: 1
  max:
    v: 1
type:
  code:
    v: Reference
    l: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/MolecularDefinition|6.0.0-ballot3
    l: http://hl7.org/fhir/StructureDefinition/MolecularDefinition
constraint:
  key:
    v: ele-1
  severity:
    v: error
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    v: All FHIR elements must have a @value or children
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    v: http://hl7.org/fhir/StructureDefinition/Element
    l: Element
must support:
  v: false
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  v: false
is summary:
  v: true

id:
  v: MolecularDefinition.representation.relative.edit.replacedMolecule
path:
  v: MolecularDefinition.representation.relative.edit.replacedMolecule
short:
  v: The portion of the molecular entity that is replaced by the replacementMolecule
definition:
  v: The portion of the molecular entity that is replaced by the replacementMolecule as a result of the edit. The value of this element can be derived as the state of the entity at the specified coordinateInterval, prior to the edit being applied. It is provided for convenience.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: MolecularDefinition.representation.relative.edit.replacedMolecule
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    v: 0
  max:
    v: 1
type:
  code:
    v: Reference
    l: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/MolecularDefinition|6.0.0-ballot3
    l: http://hl7.org/fhir/StructureDefinition/MolecularDefinition
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    v: All FHIR elements must have a @value or children
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    v: MolecularDefinition
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    v: MolecularDefinition.type
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    v: 1
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    v: 1
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    v: true
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      v: required
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      v: http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/molecule-type
      l: molecule-type
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    v: MolecularDefinition.topology
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    v: MolecularDefinition.topology
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      v: required
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      v: http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/topology
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  id:
    v: MolecularDefinition.member
  path:
    v: MolecularDefinition.member
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      v: Reference
      l: Reference
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      v: http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/allele
      l: allele
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      v: http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/haplotype
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    v: true
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    v: MolecularDefinition.location
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    v: MolecularDefinition.location
  max:
    v: 0
element:
  id:
    v: MolecularDefinition.representation.extracted
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    v: MolecularDefinition.representation.extracted
  max:
    v: 0
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    v: MolecularDefinition.representation.repeated
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    v: MolecularDefinition.representation.repeated
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    v: 0
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    v: MolecularDefinition.representation.concatenated
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    v: MolecularDefinition.representation.concatenated
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    v: 0