Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/normalization-method | Version: 1.0.0-ballot1 | |||
| Standards status: Informative | Computable Name: NormalizationMethodVS | |||
Normalization method of genomic sequence, e.g., left or right shift.
References
http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/normalization-method
Expansion performed internally based on codesystem Normalization Method v1.0.0-ballot1 (CodeSystem)
This value set contains 3 concepts
| Code | System | Display | Definition |
| left-shift | http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/normalization-method | Left shift | Variant coordinates normalized by shifting bases to the left, as per VCF specifications |
| right-shift | http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/normalization-method | Right shift | Variant coordinates normalized by shifting bases to the right, as per HGVS specifications |
| fully-justified | http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/normalization-method | Fully justified | Variant coordinates normalized by full justification, as per VOCA specifications |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |