Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build International flag

Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions

ValueSet: Coordinate Origin ValueSet (Experimental)

Official URL: http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/coordinate-origin Version: 1.0.0-ballot1
Standards status: Informative Computable Name: CoordinateOriginVS

Coordinate origin of how the start of the sequence is denoted.

References

Logical Definition (CLD)

 

Expansion

Expansion performed internally based on codesystem Coordinate Origin v1.0.0-ballot1 (CodeSystem)

This value set contains 3 concepts

CodeSystemDisplayDefinition
  sequence-starthttp://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/coordinate-originSequence startCounting begins at the start of the sequence - e.g., 5' end or N terminus
  feature-starthttp://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/coordinate-originFeature startCounting begins at the start of a designated feature - e.g., translation initiation codon (A in ATG), exon
  feature-endhttp://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/coordinate-originFeature endCounting begins at the end of a designated feature - e.g., exon (as offset into the following intron)

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code