Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/coordinate-origin | Version: 1.0.0-ballot1 | |||
| Standards status: Informative | Computable Name: CoordinateOriginVS | |||
Coordinate origin of how the start of the sequence is denoted.
References
http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/coordinate-origin
Expansion performed internally based on codesystem Coordinate Origin v1.0.0-ballot1 (CodeSystem)
This value set contains 3 concepts
| Code | System | Display | Definition |
| sequence-start | http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/coordinate-origin | Sequence start | Counting begins at the start of the sequence - e.g., 5' end or N terminus |
| feature-start | http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/coordinate-origin | Feature start | Counting begins at the start of a designated feature - e.g., translation initiation codon (A in ATG), exon |
| feature-end | http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/coordinate-origin | Feature end | Counting begins at the end of a designated feature - e.g., exon (as offset into the following intron) |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |