Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
Official URL: http://hl7.org/fhir/uv/molecular-definition-data-types/StructureDefinition/variation | Version: 1.0.0-ballot1 | |||
Standards status: Informative | Computable Name: Variation |
Variation profile of the MolecularDefinition resource.
The Variation profile defines a structured approach for representing genetic variations at specific genomic loci. It characterizes the genetic composition at a given location in three distinct states: context, reference, and alternative. This profile leverages MolecularDefinition resource to enable precise communication of genetic alterations. Where applicable, the Variation profile can integrate Sequence and Allele profiles to provide a comprehensive representation of genomic changes, supporting interoperability in health information systems.
Usages:
You can also check for usages in the FHIR IG Statistics
Description of Profiles, Differentials, Snapshots and how the different presentations work.
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
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0..* | MolecularDefinition | Definitional content for a molecular entity | |
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?!Σ | 0..1 | uri | A set of rules under which this content was created |
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0..* | Resource | Contained, inline Resources | |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored |
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SΣ | 1..1 | CodeableConcept | Classification of the molecule into types other than those defined by moleculeType Binding: Molecule Type (required) |
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Σ | 0..* | CodeableConcept | The structural topology of the molecular entity (e.g., linear, circular) Binding: Topology (required) |
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Σ | 1..1 | BackboneElement | A defined location on a molecular entity |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 2..* | BackboneElement | A representation of a molecular entity Slice: Unordered, Open by value:focus |
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Content/Rules for all slices | |||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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SΣ | 0..1 | BackboneElement | A representation of a molecular entity |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: context-state | |
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1..1 | string | Representation defined by the system Fixed Value: Context State | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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0..1 | string | Plain text representation of the concept | |
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SΣ | 1..1 | BackboneElement | A representation of a molecular entity |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: reference-state | |
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1..1 | string | Representation defined by the system Fixed Value: Reference State | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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0..1 | string | Plain text representation of the concept | |
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SΣ | 1..1 | BackboneElement | A representation of a molecular entity |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: alternative-state | |
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1..1 | string | Representation defined by the system Fixed Value: Alternative State | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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0..1 | string | Plain text representation of the concept | |
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Path | Conformance | ValueSet | URI |
MolecularDefinition.type | required | MoleculeTypeVS(a valid code from Molecule Type)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/molecule-type From this IG | |
MolecularDefinition.topology | required | TopologyVS(a valid code from Topology)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/topology From this IG |
Id | Grade | Path(s) | Details | Requirements |
dom-2 | error | MolecularDefinition | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
dom-3 | error | MolecularDefinition | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id.trace('id') in %resource.descendants().select(reference | as(uri))) or descendants().where(reference='#' | as(uri)='#').exists()).not()).trace('unmatched', id).empty() | |
dom-4 | error | MolecularDefinition | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
dom-5 | error | MolecularDefinition | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
dom-6 | best practice | MolecularDefinition | A resource should have narrative for robust management : text.`div`.exists() | |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |
This structure is derived from MolecularDefinition
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
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0..* | MolecularDefinition | Definitional content for a molecular entity | |
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S | 1..1 | CodeableConcept | Classification of the molecule into types other than those defined by moleculeType Binding: Molecule Type (required) |
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0..* | CodeableConcept | The structural topology of the molecular entity (e.g., linear, circular) Binding: Topology (required) | |
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0..0 | |||
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1..1 | BackboneElement | A defined location on a molecular entity | |
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1..1 | Reference(Sequence) | The sequence on which the location is defined | |
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0..1 | CodeableConcept | The location of the origin of the coordinate system Binding: Coordinate Origin (required) | |
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0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system Binding: Normalization Method (required) | |
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0..1 | CodeableConcept | The strand at the coordinateInterval Binding: Strand Orientation (required) | |
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2..* | BackboneElement | A representation of a molecular entity Slice: Unordered, Open by value:focus | |
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S | 0..1 | BackboneElement | A representation of a molecular entity |
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1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: context-state | |
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1..1 | string | Representation defined by the system Fixed Value: Context State | |
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S | 1..1 | BackboneElement | A representation of a molecular entity |
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1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: reference-state | |
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1..1 | string | Representation defined by the system Fixed Value: Reference State | |
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S | 1..1 | BackboneElement | A representation of a molecular entity |
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1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: alternative-state | |
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1..1 | string | Representation defined by the system Fixed Value: Alternative State | |
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Path | Conformance | ValueSet | URI |
MolecularDefinition.type | required | MoleculeTypeVS(a valid code from Molecule Type)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/molecule-type From this IG | |
MolecularDefinition.topology | required | TopologyVS(a valid code from Topology)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/topology From this IG | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.origin | required | CoordinateOriginVS(a valid code from Coordinate Origin)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/coordinate-origin From this IG | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.normalizationMethod | required | NormalizationMethodVS(a valid code from Normalization Method)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/normalization-method From this IG | |
MolecularDefinition.location.sequenceLocation.strand | required | StrandOrientationVS(a valid code from Strand Orientation)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/strand-orientation From this IG |
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() | ||||
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0..* | MolecularDefinition | Definitional content for a molecular entity | |||||
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Σ | 0..1 | id | Logical id of this artifact | ||||
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Σ | 0..1 | Meta | Metadata about the resource | ||||
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?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
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0..1 | code | Language of the resource content Binding: AllLanguages (required): IETF language tag for a human language
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0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements | |||||
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0..* | Resource | Contained, inline Resources | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
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Σ | 0..* | Identifier | Unique ID of an instance | ||||
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0..1 | markdown | Description of the Molecular Definition instance | |||||
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Σ | 0..1 | CodeableConcept | The type of molecule (e.g., DNA, RNA, amino acid) | ||||
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SΣ | 1..1 | CodeableConcept | Classification of the molecule into types other than those defined by moleculeType Binding: Molecule Type (required) | ||||
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Σ | 0..* | CodeableConcept | The structural topology of the molecular entity (e.g., linear, circular) Binding: Topology (required) | ||||
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Σ | 1..1 | BackboneElement | A defined location on a molecular entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | BackboneElement | A coordinate-based location on a sequence | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(Sequence) | The sequence on which the location is defined | ||||
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Σ | 0..1 | BackboneElement | An interval on a sequence | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
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Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system Binding: Coordinate Origin (required) | ||||
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Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system Binding: Normalization Method (required) | ||||
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Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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0..1 | CodeableConcept | The strand at the coordinateInterval Binding: Strand Orientation (required) | |||||
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Σ | 0..1 | BackboneElement | A cytoband-based location on a sequence | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | BackboneElement | Reference Genome | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | CodeableConcept | Species of the organism | |||||
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0..1 | CodeableConcept | Build number | |||||
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0..1 | CodeableConcept | Accession | |||||
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0..1 | Genome assembly description | ||||||
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markdown | |||||||
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string | |||||||
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Σ | 1..1 | BackboneElement | Cytoband Interval | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | CodeableConcept | Chromosome | ||||
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Σ | 0..1 | BackboneElement | Start | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | Arm | ||||||
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code | |||||||
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string | |||||||
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0..1 | Region | ||||||
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code | |||||||
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string | |||||||
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0..1 | Band | ||||||
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code | |||||||
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string | |||||||
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0..1 | Sub-band | ||||||
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code | |||||||
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string | |||||||
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Σ | 0..1 | BackboneElement | End | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | Arm | ||||||
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code | |||||||
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string | |||||||
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0..1 | Region | ||||||
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code | |||||||
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string | |||||||
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0..1 | Band | ||||||
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code | |||||||
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string | |||||||
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0..1 | SuBand | ||||||
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code | |||||||
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string | |||||||
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Σ | 2..* | BackboneElement | A representation of a molecular entity Slice: Unordered, Open by value:focus | ||||
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Content/Rules for all slices | |||||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation | ||||
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Σ | 0..* | CodeableConcept | A code (e.g., sequence accession number) used to represent a molecular entity | ||||
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Σ | 0..1 | BackboneElement | A molecular entity defined as a string literal | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The encoding used in the value | ||||
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Σ | 1..1 | string | A string literal representation of the molecular entity, using the encoding specified in encoding | ||||
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Σ | 0..1 | Reference(DocumentReference) | A resolvable representation of a molecular entity (e.g., URI, attached and formatted file) | ||||
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Σ | 0..1 | BackboneElement | A molecular entity that is represented as a portion of a different entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived | ||||
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Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | boolean | A flag that indicates whether the extracted sequence should be reverse complemented | ||||
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Σ | 0..1 | BackboneElement | A representation as a repeated motif | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The motif that is repeated | ||||
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Σ | 1..1 | integer | The number of copies of the motif | ||||
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Σ | 0..1 | BackboneElement | An ordered concatenation of molecular entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..* | BackboneElement | One of the concatenated entities | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | A reference to the sequence that defines this specific concatenated element | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The ordinal index of the element within the concatenated representation | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity represented as an ordered series of edits on a specified starting entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity on which edits will be applied | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | BackboneElement | A defined edit (change) to be applied | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | integer | Defines the order of edits when multiple edits are to be applied to the startingMolecule | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the replacement in the edit operation | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(MolecularDefinition) | The portion of the molecular entity that is replaced by the replacementMolecule | ||||
![]() ![]() ![]() ![]() |
SΣ | 0..1 | BackboneElement | A representation of a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: context-state | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Context State | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | CodeableConcept | A code (e.g., sequence accession number) used to represent a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity defined as a string literal | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The encoding used in the value | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | string | A string literal representation of the molecular entity, using the encoding specified in encoding | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(DocumentReference) | A resolvable representation of a molecular entity (e.g., URI, attached and formatted file) | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity that is represented as a portion of a different entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The end location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | boolean | A flag that indicates whether the extracted sequence should be reverse complemented | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A representation as a repeated motif | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The motif that is repeated | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The number of copies of the motif | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | An ordered concatenation of molecular entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..* | BackboneElement | One of the concatenated entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | A reference to the sequence that defines this specific concatenated element | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The ordinal index of the element within the concatenated representation | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity represented as an ordered series of edits on a specified starting entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity on which edits will be applied | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | BackboneElement | A defined edit (change) to be applied | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | integer | Defines the order of edits when multiple edits are to be applied to the startingMolecule | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The end location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the replacement in the edit operation | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(MolecularDefinition) | The portion of the molecular entity that is replaced by the replacementMolecule | ||||
![]() ![]() ![]() ![]() |
SΣ | 1..1 | BackboneElement | A representation of a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: reference-state | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Reference State | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | CodeableConcept | A code (e.g., sequence accession number) used to represent a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity defined as a string literal | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The encoding used in the value | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | string | A string literal representation of the molecular entity, using the encoding specified in encoding | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(DocumentReference) | A resolvable representation of a molecular entity (e.g., URI, attached and formatted file) | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity that is represented as a portion of a different entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The end location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | boolean | A flag that indicates whether the extracted sequence should be reverse complemented | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A representation as a repeated motif | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The motif that is repeated | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The number of copies of the motif | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | An ordered concatenation of molecular entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..* | BackboneElement | One of the concatenated entities | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | A reference to the sequence that defines this specific concatenated element | ||||
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Σ | 1..1 | integer | The ordinal index of the element within the concatenated representation | ||||
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Σ | 0..1 | BackboneElement | A molecular entity represented as an ordered series of edits on a specified starting entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity on which edits will be applied | ||||
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Σ | 0..* | BackboneElement | A defined edit (change) to be applied | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | integer | Defines the order of edits when multiple edits are to be applied to the startingMolecule | |||||
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Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
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Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
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Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
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Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the replacement in the edit operation | ||||
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Σ | 0..1 | Reference(MolecularDefinition) | The portion of the molecular entity that is replaced by the replacementMolecule | ||||
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SΣ | 1..1 | BackboneElement | A representation of a molecular entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |||||
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0..1 | string | Version of the system - if relevant | |||||
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1..1 | code | Symbol in syntax defined by the system Fixed Value: alternative-state | |||||
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1..1 | string | Representation defined by the system Fixed Value: Alternative State | |||||
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0..1 | boolean | If this coding was chosen directly by the user | |||||
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0..1 | string | Plain text representation of the concept | |||||
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Σ | 0..* | CodeableConcept | A code (e.g., sequence accession number) used to represent a molecular entity | ||||
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Σ | 0..1 | BackboneElement | A molecular entity defined as a string literal | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The encoding used in the value | ||||
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Σ | 1..1 | string | A string literal representation of the molecular entity, using the encoding specified in encoding | ||||
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Σ | 0..1 | Reference(DocumentReference) | A resolvable representation of a molecular entity (e.g., URI, attached and formatted file) | ||||
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Σ | 0..1 | BackboneElement | A molecular entity that is represented as a portion of a different entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived | ||||
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Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | boolean | A flag that indicates whether the extracted sequence should be reverse complemented | ||||
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Σ | 0..1 | BackboneElement | A representation as a repeated motif | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The motif that is repeated | ||||
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Σ | 1..1 | integer | The number of copies of the motif | ||||
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Σ | 0..1 | BackboneElement | An ordered concatenation of molecular entities | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..* | BackboneElement | One of the concatenated entities | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | A reference to the sequence that defines this specific concatenated element | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The ordinal index of the element within the concatenated representation | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity represented as an ordered series of edits on a specified starting entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity on which edits will be applied | ||||
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Σ | 0..* | BackboneElement | A defined edit (change) to be applied | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | integer | Defines the order of edits when multiple edits are to be applied to the startingMolecule | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the replacement in the edit operation | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(MolecularDefinition) | The portion of the molecular entity that is replaced by the replacementMolecule | ||||
![]() |
Path | Conformance | ValueSet | URI |
MolecularDefinition.language | required | AllLanguageshttp://hl7.org/fhir/ValueSet/all-languages|6.0.0-ballot3 From the FHIR Standard | |
MolecularDefinition.type | required | MoleculeTypeVS(a valid code from Molecule Type)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/molecule-type From this IG | |
MolecularDefinition.topology | required | TopologyVS(a valid code from Topology)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/topology From this IG | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.origin | required | CoordinateOriginVS(a valid code from Coordinate Origin)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/coordinate-origin From this IG | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.normalizationMethod | required | NormalizationMethodVS(a valid code from Normalization Method)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/normalization-method From this IG | |
MolecularDefinition.location.sequenceLocation.strand | required | StrandOrientationVS(a valid code from Strand Orientation)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/strand-orientation From this IG | |
MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:contextState.extracted.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:contextState.relative.edit.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:referenceState.extracted.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:referenceState.relative.edit.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:alternativeState.extracted.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:alternativeState.relative.edit.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 |
Id | Grade | Path(s) | Details | Requirements |
dom-2 | error | MolecularDefinition | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
dom-3 | error | MolecularDefinition | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id.trace('id') in %resource.descendants().select(reference | as(uri))) or descendants().where(reference='#' | as(uri)='#').exists()).not()).trace('unmatched', id).empty() | |
dom-4 | error | MolecularDefinition | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
dom-5 | error | MolecularDefinition | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
dom-6 | best practice | MolecularDefinition | A resource should have narrative for robust management : text.`div`.exists() | |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |
This structure is derived from MolecularDefinition
Summary
Mandatory: 6 elements(1 nested mandatory element)
Must-Support: 4 elements
Prohibited: 1 element
Structures
This structure refers to these other structures:
Slices
This structure defines the following Slices:
Key Elements View
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
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0..* | MolecularDefinition | Definitional content for a molecular entity | |
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?!Σ | 0..1 | uri | A set of rules under which this content was created |
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0..* | Resource | Contained, inline Resources | |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored |
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SΣ | 1..1 | CodeableConcept | Classification of the molecule into types other than those defined by moleculeType Binding: Molecule Type (required) |
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Σ | 0..* | CodeableConcept | The structural topology of the molecular entity (e.g., linear, circular) Binding: Topology (required) |
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Σ | 1..1 | BackboneElement | A defined location on a molecular entity |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 2..* | BackboneElement | A representation of a molecular entity Slice: Unordered, Open by value:focus |
![]() ![]() ![]() ![]() |
Content/Rules for all slices | |||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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SΣ | 0..1 | BackboneElement | A representation of a molecular entity |
![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
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Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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0..1 | string | Unique id for inter-element referencing | |
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0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: context-state | |
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1..1 | string | Representation defined by the system Fixed Value: Context State | |
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0..1 | boolean | If this coding was chosen directly by the user | |
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0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() ![]() |
SΣ | 1..1 | BackboneElement | A representation of a molecular entity |
![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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0..1 | string | Version of the system - if relevant | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: reference-state | |
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1..1 | string | Representation defined by the system Fixed Value: Reference State | |
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0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() ![]() |
SΣ | 1..1 | BackboneElement | A representation of a molecular entity |
![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: alternative-state | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Alternative State | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |
![]() |
Path | Conformance | ValueSet | URI |
MolecularDefinition.type | required | MoleculeTypeVS(a valid code from Molecule Type)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/molecule-type From this IG | |
MolecularDefinition.topology | required | TopologyVS(a valid code from Topology)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/topology From this IG |
Id | Grade | Path(s) | Details | Requirements |
dom-2 | error | MolecularDefinition | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
dom-3 | error | MolecularDefinition | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id.trace('id') in %resource.descendants().select(reference | as(uri))) or descendants().where(reference='#' | as(uri)='#').exists()).not()).trace('unmatched', id).empty() | |
dom-4 | error | MolecularDefinition | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
dom-5 | error | MolecularDefinition | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
dom-6 | best practice | MolecularDefinition | A resource should have narrative for robust management : text.`div`.exists() | |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |
Differential View
This structure is derived from MolecularDefinition
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
---|---|---|---|---|
![]() ![]() |
0..* | MolecularDefinition | Definitional content for a molecular entity | |
![]() ![]() ![]() |
S | 1..1 | CodeableConcept | Classification of the molecule into types other than those defined by moleculeType Binding: Molecule Type (required) |
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0..* | CodeableConcept | The structural topology of the molecular entity (e.g., linear, circular) Binding: Topology (required) | |
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0..0 | |||
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1..1 | BackboneElement | A defined location on a molecular entity | |
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||||
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1..1 | Reference(Sequence) | The sequence on which the location is defined | |
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||||
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||||
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0..1 | CodeableConcept | The location of the origin of the coordinate system Binding: Coordinate Origin (required) | |
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0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system Binding: Normalization Method (required) | |
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0..1 | CodeableConcept | The strand at the coordinateInterval Binding: Strand Orientation (required) | |
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2..* | BackboneElement | A representation of a molecular entity Slice: Unordered, Open by value:focus | |
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S | 0..1 | BackboneElement | A representation of a molecular entity |
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1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | |
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1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: context-state | |
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1..1 | string | Representation defined by the system Fixed Value: Context State | |
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S | 1..1 | BackboneElement | A representation of a molecular entity |
![]() ![]() ![]() ![]() ![]() |
1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | |
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
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1..1 | code | Symbol in syntax defined by the system Fixed Value: reference-state | |
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1..1 | string | Representation defined by the system Fixed Value: Reference State | |
![]() ![]() ![]() ![]() |
S | 1..1 | BackboneElement | A representation of a molecular entity |
![]() ![]() ![]() ![]() ![]() |
1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | |
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: alternative-state | |
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1..1 | string | Representation defined by the system Fixed Value: Alternative State | |
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Path | Conformance | ValueSet | URI |
MolecularDefinition.type | required | MoleculeTypeVS(a valid code from Molecule Type)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/molecule-type From this IG | |
MolecularDefinition.topology | required | TopologyVS(a valid code from Topology)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/topology From this IG | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.origin | required | CoordinateOriginVS(a valid code from Coordinate Origin)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/coordinate-origin From this IG | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.normalizationMethod | required | NormalizationMethodVS(a valid code from Normalization Method)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/normalization-method From this IG | |
MolecularDefinition.location.sequenceLocation.strand | required | StrandOrientationVS(a valid code from Strand Orientation)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/strand-orientation From this IG |
Snapshot View
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() | ||||
---|---|---|---|---|---|---|---|---|
![]() ![]() |
0..* | MolecularDefinition | Definitional content for a molecular entity | |||||
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Σ | 0..1 | id | Logical id of this artifact | ||||
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Σ | 0..1 | Meta | Metadata about the resource | ||||
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?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
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0..1 | code | Language of the resource content Binding: AllLanguages (required): IETF language tag for a human language
| |||||
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0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements | |||||
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0..* | Resource | Contained, inline Resources | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
![]() ![]() ![]() |
Σ | 0..* | Identifier | Unique ID of an instance | ||||
![]() ![]() ![]() |
0..1 | markdown | Description of the Molecular Definition instance | |||||
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Σ | 0..1 | CodeableConcept | The type of molecule (e.g., DNA, RNA, amino acid) | ||||
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SΣ | 1..1 | CodeableConcept | Classification of the molecule into types other than those defined by moleculeType Binding: Molecule Type (required) | ||||
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Σ | 0..* | CodeableConcept | The structural topology of the molecular entity (e.g., linear, circular) Binding: Topology (required) | ||||
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Σ | 1..1 | BackboneElement | A defined location on a molecular entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A coordinate-based location on a sequence | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(Sequence) | The sequence on which the location is defined | ||||
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Σ | 0..1 | BackboneElement | An interval on a sequence | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system Binding: Coordinate Origin (required) | ||||
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Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system Binding: Normalization Method (required) | ||||
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Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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0..1 | CodeableConcept | The strand at the coordinateInterval Binding: Strand Orientation (required) | |||||
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Σ | 0..1 | BackboneElement | A cytoband-based location on a sequence | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | BackboneElement | Reference Genome | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | CodeableConcept | Species of the organism | |||||
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0..1 | CodeableConcept | Build number | |||||
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0..1 | CodeableConcept | Accession | |||||
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0..1 | Genome assembly description | ||||||
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markdown | |||||||
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string | |||||||
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Σ | 1..1 | BackboneElement | Cytoband Interval | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | CodeableConcept | Chromosome | ||||
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Σ | 0..1 | BackboneElement | Start | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | Arm | ||||||
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code | |||||||
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string | |||||||
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0..1 | Region | ||||||
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code | |||||||
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string | |||||||
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0..1 | Band | ||||||
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code | |||||||
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string | |||||||
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0..1 | Sub-band | ||||||
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code | |||||||
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string | |||||||
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Σ | 0..1 | BackboneElement | End | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | Arm | ||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
code | |||||||
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string | |||||||
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0..1 | Region | ||||||
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code | |||||||
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string | |||||||
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0..1 | Band | ||||||
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code | |||||||
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string | |||||||
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0..1 | SuBand | ||||||
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code | |||||||
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string | |||||||
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Σ | 2..* | BackboneElement | A representation of a molecular entity Slice: Unordered, Open by value:focus | ||||
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Content/Rules for all slices | |||||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation | ||||
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Σ | 0..* | CodeableConcept | A code (e.g., sequence accession number) used to represent a molecular entity | ||||
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Σ | 0..1 | BackboneElement | A molecular entity defined as a string literal | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The encoding used in the value | ||||
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Σ | 1..1 | string | A string literal representation of the molecular entity, using the encoding specified in encoding | ||||
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Σ | 0..1 | Reference(DocumentReference) | A resolvable representation of a molecular entity (e.g., URI, attached and formatted file) | ||||
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Σ | 0..1 | BackboneElement | A molecular entity that is represented as a portion of a different entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived | ||||
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Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | boolean | A flag that indicates whether the extracted sequence should be reverse complemented | ||||
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Σ | 0..1 | BackboneElement | A representation as a repeated motif | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The motif that is repeated | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The number of copies of the motif | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | An ordered concatenation of molecular entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..* | BackboneElement | One of the concatenated entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | A reference to the sequence that defines this specific concatenated element | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The ordinal index of the element within the concatenated representation | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity represented as an ordered series of edits on a specified starting entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity on which edits will be applied | ||||
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Σ | 0..* | BackboneElement | A defined edit (change) to be applied | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | integer | Defines the order of edits when multiple edits are to be applied to the startingMolecule | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the replacement in the edit operation | ||||
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Σ | 0..1 | Reference(MolecularDefinition) | The portion of the molecular entity that is replaced by the replacementMolecule | ||||
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SΣ | 0..1 | BackboneElement | A representation of a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: context-state | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Context State | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | CodeableConcept | A code (e.g., sequence accession number) used to represent a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity defined as a string literal | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The encoding used in the value | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | string | A string literal representation of the molecular entity, using the encoding specified in encoding | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(DocumentReference) | A resolvable representation of a molecular entity (e.g., URI, attached and formatted file) | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity that is represented as a portion of a different entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
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Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | boolean | A flag that indicates whether the extracted sequence should be reverse complemented | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A representation as a repeated motif | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The motif that is repeated | ||||
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Σ | 1..1 | integer | The number of copies of the motif | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | An ordered concatenation of molecular entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..* | BackboneElement | One of the concatenated entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | A reference to the sequence that defines this specific concatenated element | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The ordinal index of the element within the concatenated representation | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity represented as an ordered series of edits on a specified starting entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity on which edits will be applied | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | BackboneElement | A defined edit (change) to be applied | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | integer | Defines the order of edits when multiple edits are to be applied to the startingMolecule | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the replacement in the edit operation | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(MolecularDefinition) | The portion of the molecular entity that is replaced by the replacementMolecule | ||||
![]() ![]() ![]() ![]() |
SΣ | 1..1 | BackboneElement | A representation of a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: reference-state | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Reference State | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | CodeableConcept | A code (e.g., sequence accession number) used to represent a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity defined as a string literal | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The encoding used in the value | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | string | A string literal representation of the molecular entity, using the encoding specified in encoding | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(DocumentReference) | A resolvable representation of a molecular entity (e.g., URI, attached and formatted file) | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity that is represented as a portion of a different entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The end location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | boolean | A flag that indicates whether the extracted sequence should be reverse complemented | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A representation as a repeated motif | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The motif that is repeated | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The number of copies of the motif | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | An ordered concatenation of molecular entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..* | BackboneElement | One of the concatenated entities | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | A reference to the sequence that defines this specific concatenated element | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | integer | The ordinal index of the element within the concatenated representation | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity represented as an ordered series of edits on a specified starting entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity on which edits will be applied | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | BackboneElement | A defined edit (change) to be applied | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | integer | Defines the order of edits when multiple edits are to be applied to the startingMolecule | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The start location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | The end location of the interval | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Quantity | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Range | |||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the replacement in the edit operation | ||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(MolecularDefinition) | The portion of the molecular entity that is replaced by the replacementMolecule | ||||
![]() ![]() ![]() ![]() |
SΣ | 1..1 | BackboneElement | A representation of a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 1..1 | CodeableConcept | The domain concept that is the focus of a given instance of the representation Required Pattern: At least the following | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
1..* | Coding | Code defined by a terminology system Fixed Value: (Complex) | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | uri | Identity of the terminology system Fixed Value: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/molecular-definition-focus | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Version of the system - if relevant | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | code | Symbol in syntax defined by the system Fixed Value: alternative-state | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
1..1 | string | Representation defined by the system Fixed Value: Alternative State | |||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | boolean | If this coding was chosen directly by the user | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Plain text representation of the concept | |||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..* | CodeableConcept | A code (e.g., sequence accession number) used to represent a molecular entity | ||||
![]() ![]() ![]() ![]() ![]() |
Σ | 0..1 | BackboneElement | A molecular entity defined as a string literal | ||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The encoding used in the value | ||||
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Σ | 1..1 | string | A string literal representation of the molecular entity, using the encoding specified in encoding | ||||
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Σ | 0..1 | Reference(DocumentReference) | A resolvable representation of a molecular entity (e.g., URI, attached and formatted file) | ||||
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Σ | 0..1 | BackboneElement | A molecular entity that is represented as a portion of a different entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the conceptual 'parent' from which the intended entity is derived | ||||
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Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
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Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
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Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
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Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | boolean | A flag that indicates whether the extracted sequence should be reverse complemented | ||||
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Σ | 0..1 | BackboneElement | A representation as a repeated motif | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The motif that is repeated | ||||
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Σ | 1..1 | integer | The number of copies of the motif | ||||
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Σ | 0..1 | BackboneElement | An ordered concatenation of molecular entities | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..* | BackboneElement | One of the concatenated entities | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | A reference to the sequence that defines this specific concatenated element | ||||
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Σ | 1..1 | integer | The ordinal index of the element within the concatenated representation | ||||
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Σ | 0..1 | BackboneElement | A molecular entity represented as an ordered series of edits on a specified starting entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity on which edits will be applied | ||||
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Σ | 0..* | BackboneElement | A defined edit (change) to be applied | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | integer | Defines the order of edits when multiple edits are to be applied to the startingMolecule | |||||
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Σ | 0..1 | BackboneElement | The interval on startingMolecule that defines the portion to be extracted to produce the intended entity | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | BackboneElement | The coordinate system used to define the location | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | CodeableConcept | The type of coordinate system used Binding: LOINC Answer List LL5323-2 (extensible): Coordinate system. | ||||
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Σ | 0..1 | CodeableConcept | The location of the origin of the coordinate system | ||||
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Σ | 0..1 | CodeableConcept | The normalization method used for determining a location within the coordinate system | ||||
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Σ | 0..1 | The start location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 0..1 | The end location of the interval | |||||
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Quantity | |||||||
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Range | |||||||
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Σ | 1..1 | Reference(MolecularDefinition) | The molecular entity that serves as the replacement in the edit operation | ||||
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Σ | 0..1 | Reference(MolecularDefinition) | The portion of the molecular entity that is replaced by the replacementMolecule | ||||
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Path | Conformance | ValueSet | URI |
MolecularDefinition.language | required | AllLanguageshttp://hl7.org/fhir/ValueSet/all-languages|6.0.0-ballot3 From the FHIR Standard | |
MolecularDefinition.type | required | MoleculeTypeVS(a valid code from Molecule Type)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/molecule-type From this IG | |
MolecularDefinition.topology | required | TopologyVS(a valid code from Topology)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/topology From this IG | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.origin | required | CoordinateOriginVS(a valid code from Coordinate Origin)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/coordinate-origin From this IG | |
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.normalizationMethod | required | NormalizationMethodVS(a valid code from Normalization Method)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/normalization-method From this IG | |
MolecularDefinition.location.sequenceLocation.strand | required | StrandOrientationVS(a valid code from Strand Orientation)http://hl7.org/fhir/uv/molecular-definition-data-types/ValueSet/strand-orientation From this IG | |
MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:contextState.extracted.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:contextState.relative.edit.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:referenceState.extracted.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:referenceState.relative.edit.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:alternativeState.extracted.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 | |
MolecularDefinition.representation:alternativeState.relative.edit.coordinateInterval.coordinateSystem.system | extensible | LOINC LL5323-2http://loinc.org/vs/LL5323-2 |
Id | Grade | Path(s) | Details | Requirements |
dom-2 | error | MolecularDefinition | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
dom-3 | error | MolecularDefinition | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id.trace('id') in %resource.descendants().select(reference | as(uri))) or descendants().where(reference='#' | as(uri)='#').exists()).not()).trace('unmatched', id).empty() | |
dom-4 | error | MolecularDefinition | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
dom-5 | error | MolecularDefinition | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
dom-6 | best practice | MolecularDefinition | A resource should have narrative for robust management : text.`div`.exists() | |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |
This structure is derived from MolecularDefinition
Summary
Mandatory: 6 elements(1 nested mandatory element)
Must-Support: 4 elements
Prohibited: 1 element
Structures
This structure refers to these other structures:
Slices
This structure defines the following Slices:
Other representations of profile: CSV, Excel, Schematron