Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions

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Resource Profile: Variation - Mappings

Page standards status: Informative

Mappings for the variation resource profile.

Mappings to Structures in this Implementation Guide

No Mappings Found

Mappings to other Structures

No Mappings Found

Other Mappings

Name	FiveWs Pattern Mapping	RIM Mapping
MolecularDefinition	clinical.diagnostics	Entity Role or Act
id
meta
implicitRules
language
text		Act.text?
contained		N/A
extension		N/A
modifierExtension		N/A
identifier	FiveWs.identifier
description
moleculeType
type
topology
member
location
id		n/a
extension		n/a
modifierExtension		N/A
sequenceLocation
id		n/a
extension		n/a
modifierExtension		N/A
sequenceContext
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
strand
cytobandLocation
id		n/a
extension		n/a
modifierExtension		N/A
genomeAssembly
id		n/a
extension		n/a
modifierExtension		N/A
organism
build
accession
description[x]
cytobandInterval
id		n/a
extension		n/a
modifierExtension		N/A
chromosome
startCytoband
id		n/a
extension		n/a
modifierExtension		N/A
arm[x]
region[x]
band[x]
subBand[x]
endCytoband
id		n/a
extension		n/a
modifierExtension		N/A
arm[x]
region[x]
band[x]
subBand[x]
Slices for representation
representation:All Slices
id		n/a
extension		n/a
modifierExtension		N/A
focus
code
literal
id		n/a
extension		n/a
modifierExtension		N/A
encoding
value
resolvable
extracted
id		n/a
extension		n/a
modifierExtension		N/A
startingMolecule
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
reverseComplement
repeated
id		n/a
extension		n/a
modifierExtension		N/A
sequenceMotif
copyCount
concatenated
id		n/a
extension		n/a
modifierExtension		N/A
sequenceElement
id		n/a
extension		n/a
modifierExtension		N/A
sequence
ordinalIndex
relative
id		n/a
extension		n/a
modifierExtension		N/A
startingMolecule
edit
id		n/a
extension		n/a
modifierExtension		N/A
editOrder
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
replacementMolecule
replacedMolecule
representation:contextState
id		n/a
extension		n/a
modifierExtension		N/A
focus
code
literal
id		n/a
extension		n/a
modifierExtension		N/A
encoding
value
resolvable
extracted
id		n/a
extension		n/a
modifierExtension		N/A
startingMolecule
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
reverseComplement
repeated
id		n/a
extension		n/a
modifierExtension		N/A
sequenceMotif
copyCount
concatenated
id		n/a
extension		n/a
modifierExtension		N/A
sequenceElement
id		n/a
extension		n/a
modifierExtension		N/A
sequence
ordinalIndex
relative
id		n/a
extension		n/a
modifierExtension		N/A
startingMolecule
edit
id		n/a
extension		n/a
modifierExtension		N/A
editOrder
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
replacementMolecule
replacedMolecule
representation:referenceState
id		n/a
extension		n/a
modifierExtension		N/A
focus
code
literal
id		n/a
extension		n/a
modifierExtension		N/A
encoding
value
resolvable
extracted
id		n/a
extension		n/a
modifierExtension		N/A
startingMolecule
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
reverseComplement
repeated
id		n/a
extension		n/a
modifierExtension		N/A
sequenceMotif
copyCount
concatenated
id		n/a
extension		n/a
modifierExtension		N/A
sequenceElement
id		n/a
extension		n/a
modifierExtension		N/A
sequence
ordinalIndex
relative
id		n/a
extension		n/a
modifierExtension		N/A
startingMolecule
edit
id		n/a
extension		n/a
modifierExtension		N/A
editOrder
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
replacementMolecule
replacedMolecule
representation:alternativeState
id		n/a
extension		n/a
modifierExtension		N/A
focus
code
literal
id		n/a
extension		n/a
modifierExtension		N/A
encoding
value
resolvable
extracted
id		n/a
extension		n/a
modifierExtension		N/A
startingMolecule
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
reverseComplement
repeated
id		n/a
extension		n/a
modifierExtension		N/A
sequenceMotif
copyCount
concatenated
id		n/a
extension		n/a
modifierExtension		N/A
sequenceElement
id		n/a
extension		n/a
modifierExtension		N/A
sequence
ordinalIndex
relative
id		n/a
extension		n/a
modifierExtension		N/A
startingMolecule
edit
id		n/a
extension		n/a
modifierExtension		N/A
editOrder
coordinateInterval
id		n/a
extension		n/a
modifierExtension		N/A
coordinateSystem
id		n/a
extension		n/a
modifierExtension		N/A
system
origin
normalizationMethod
start[x]
end[x]
replacementMolecule
replacedMolecule
Documentation for this format