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Generated Narrative: Patient Inline-Instance-for-oncology-diagnostic-1

Carrot John Mr Male, DoB: 1962-12-31 ( 1007)

Links:
" }, "identifier" : [{ "value" : "1007" }], "name" : [{ "given" : ["Carrot", "John", "Mr"] }], "gender" : "male", "birthDate" : "1962-12-31", "generalPractitioner" : [{ "reference" : "urn:uuid:a48256f8-db37-44e0-a0f6-d7af16c7c9ef" }] }, "request" : { "method" : "POST", "url" : "Patient" } }, { "fullUrl" : "urn:uuid:a48256f8-db37-44e0-a0f6-d7af16c7c9ef", "resource" : { "resourceType" : "Practitioner", "id" : "Inline-Instance-for-oncology-diagnostic-2", "text" : { "status" : "generated", "div" : "

Generated Narrative: Practitioner Inline-Instance-for-oncology-diagnostic-2

Akerman Philip Prof (4654765876)

Contact DetailCastro Valley CA
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Generated Narrative: Specimen Inline-Instance-for-oncology-diagnostic-3

identifier: 076e1948-2217-11e9-94d8-12e241dc1f66

status: Available

subject: Carrot John Mr Male, DoB: 1962-12-31 ( 1007)

Collections

-Collector
*Akerman Philip Prof (4654765876)
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Generated Narrative: Observation Inline-Instance-for-oncology-diagnostic-4

Profile: Molecular Biomarker

status: Final

category: Laboratory, Biomarker Category, Genetics

code: Mutations/Megabase [# Ratio] in Tumor

subject: Carrot John Mr Male, DoB: 1962-12-31 ( 1007)

effective: 2019-03-05

performer: Akerman Philip Prof (4654765876)

value: 25 Mutations/Megabase (Details: UCUM code1/1000000 = '1/1000000')

specimen: Specimen: identifier = 076e1948-2217-11e9-94d8-12e241dc1f66; status = available

Components

-CodeValue[x]
*Biomarker Categorymolecular sequence adjacent category
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Generated Narrative: Observation Inline-Instance-for-oncology-diagnostic-5

Profile: Variant

status: Final

category: Laboratory, Genetics

code: Genetic variant assessment

subject: Carrot John Mr Male, DoB: 1962-12-31 ( 1007)

effective: 2019-03-05

performer: Akerman Philip Prof (4654765876)

value: Present

method: Sequencing

specimen: Specimen: identifier = 076e1948-2217-11e9-94d8-12e241dc1f66; status = available

component

code: Human reference sequence assembly version

value: GRCh37

component

code: Genomic DNA change (gHGVS)

value: NC_000007.13:g.140453136A>T

component

code: Discrete genetic variant

value: Clinvar ID 13961

component

code: Amino acid change (pHGVS)

value: NP_004324.2:p.Val600Glu

component

code: Gene studied ID

value: BRAF

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Generated Narrative: Observation Inline-Instance-for-oncology-diagnostic-6

Profile: Diagnostic Implication

Related artifact: No display for RelatedArtifact (type: justification; display: https://pmkb.weill.cornell.edu/therapies/103)

status: Final

category: Laboratory, Genetics

code: Diagnostic Implication

subject: Carrot John Mr Male, DoB: 1962-12-31 ( 1007)

effective: 2019-03-05

performer: Akerman Philip Prof (4654765876)

method: Computational analysis

specimen: Specimen: identifier = 076e1948-2217-11e9-94d8-12e241dc1f66; status = available

derivedFrom: Observation Genetic variant assessment

component

code: Genetic variation clinical significance [Imp]

value: Pathogenic

component

code: Level of Evidence

value: Very strong evidence pathogenic

component

code: Associated phenotype

value: melanoma

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Generated Narrative: DiagnosticReport Inline-Instance-for-oncology-diagnostic-7

Profile: Genomic Report

Genetic analysis report (Genetics)

SubjectCarrot John Mr Male, DoB: 1962-12-31 ( 1007)
Relevant Time2019-03-05
Performer Akerman Philip Prof (4654765876)

Report Details

CodeValueFlagsReported
Genetic variant assessmentPresentFinal2019-03-05 16:04:44+0000
Diagnostic ImplicationFinal
" }, "status" : "final", "category" : [{ "coding" : [{ "system" : "http://terminology.hl7.org/CodeSystem/v2-0074", "code" : "GE" }] }], "code" : { "coding" : [{ "system" : "http://loinc.org", "code" : "51969-4" }], "text" : "Genetic analysis report" }, "subject" : { "reference" : "urn:uuid:d0b4affa-91d6-46d1-af01-b30d9f16ef6d" }, "effectiveDateTime" : "2019-03-05", "performer" : [{ "reference" : "urn:uuid:a48256f8-db37-44e0-a0f6-d7af16c7c9ef" }], "specimen" : [{ "reference" : "urn:uuid:a5d6a6a9-4859-480e-85b2-56974fef3b9d" }], "result" : [{ "reference" : "urn:uuid:16fdd5fc-e665-48af-99e4-48d603f3e12d", "display" : "BRAF V600E mutation observed" }, { "reference" : "urn:uuid:1bf9642d-fd1c-4819-8c5d-44fae4bad524", "display" : "melanoma implicated" }] }, "request" : { "method" : "POST", "url" : "DiagnosticReport" } }] }