Validation Results for GenomicsReporting

Generated Fri Jan 30 18:42:49 UTC 2026, FHIR version 4.0.1 for hl7.fhir.uv.genomics-reporting#4.0.0-cibuild (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Full QA Report & IP

Quality Checks

Publisher Version:

IG Publisher Version: v2.0.30

Publication Code:

genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting

Realm Check for UV:

Language Info:

This IG has no language information

Publication Request:

package-id

hl7.fhir.uv.genomics-reporting

version

4.0.0-cibuild

path

http://hl7.org/fhir/uv/genomics-reporting/STU4-snapshot

Pub-Mode

working release

status

ballot

Release-Label

CI Build

Sequence (Group)

STU4 (current: 'STU3', others = 'STU 1','STU 2','STU 3')

desc

CI Build - STU 4.0.0 Development (FHIR R4)

descmd

CI Build - STU 4.0.0 Development (FHIR R4).

RelatedIgs

(None Found)

No Messages found - all good

Supressed Messages:

80 Suppressed Issues

Dependency Checks:

Package	Version	FHIR	Canonical	Web Base	Comment
hl7.fhir.uv.genomics-reporting	4.0.0-cibuild	R4	http://hl7.org/fhir/uv/genomics-reporting
hl7.terminology.r4	7.0.1 M	R4	http://terminology.hl7.org	http://terminology.hl7.org/7.0.1
hl7.fhir.uv.extensions.r4	5.2.0 M	R4	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.2.0
hl7.fhir.uv.extensions.r4	5.2.0 M	R4	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.2.0	(as above)
hl7.fhir.uv.tools.r4	0.9.0 M	R4	http://hl7.org/fhir/tools	http://hl7.org/fhir/tools/0.9.0	Internal Dependency

Templates: hl7.fhir.template#1.0.0 -> hl7.base.template#1.0.0 -> fhir.base.template#1.0.0

Related IGs:

n/a

Dependent IGs:

no references

Global Profiles:

(none declared)

Terminology Server(s):

http://tx.fhir.org/r4, https://tx-nordics.fhir.org/fhir/r4, https://tx.fhir.org/r4 (details)

HTA Analysis:

All OK

R5 Dependencies:

(none)

Draft Dependencies:

hl7.fhir.r4.core#4.0.1: GuideParameterCode (15 uses), EventStatus (3 uses), EventStatus (1 uses), Practitioner (34 uses), RelatedPerson (24 uses), Organization (29 uses), CommonLanguages (18 uses), CarePlan (16 uses), DeviceRequest (12 uses), ImmunizationRecommendation (13 uses), MedicationRequest (13 uses), NutritionOrder (13 uses), ServiceRequest (16 uses), MedicationAdministration (15 uses), MedicationDispense (13 uses), MedicationStatement (15 uses), Procedure (20 uses), Immunization (13 uses), ImagingStudy (26 uses), ObservationCategoryCodes (37 uses), LOINCCodes (115 uses), Group (18 uses), Device (40 uses), Location (17 uses), Encounter (18 uses), PractitionerRole (32 uses), CareTeam (16 uses), SNOMEDCTBodyStructures (14 uses), ObservationMethods (9 uses), Specimen (15 uses), DeviceMetric (12 uses), ObservationReferenceRangeMeaningCodes (12 uses), ObservationReferenceRangeAppliesToCodes (12 uses), QuestionnaireResponse (24 uses), MolecularSequence (28 uses), DocumentReference (17 uses), Media (13 uses), Task (8 uses), ActivityDefinition (4 uses), TaskStatus (2 uses), TaskIntent (2 uses), RequestPriority (2 uses), ProcedurePerformerRoleCodes (4 uses), HealthcareService (2 uses), Coverage (2 uses), ClaimResponse (2 uses), Provenance (2 uses), DocumentReferenceStatus (1 uses), CompositionStatus (1 uses), DocumentRelationshipType (1 uses), EpisodeOfCare (1 uses), DiagnosticReport (4 uses), DiagnosticReportStatus (1 uses), DiagnosticServiceSectionCodes (2 uses), LOINCDiagnosticReportCodes (1 uses), SNOMEDCTClinicalFindings (1 uses), RiskAssessment (2 uses), PlanDefinition (6 uses), ProcedureCategoryCodes(SNOMEDCT) (2 uses), ProcedureCodes(SNOMEDCT) (1 uses), ProcedureReasonCodes (2 uses), Condition (5 uses), ProcedureOutcomeCodes(SNOMEDCT) (2 uses), Composition (2 uses), Condition/Problem/DiagnosisCodes (2 uses), ProcedureFollowUpCodes(SNOMEDCT) (2 uses), ProcedureDeviceActionCodes (2 uses), Medication (4 uses), Substance (2 uses), FHIRDeviceTypes (2 uses), MedicationKnowledge (2 uses), ResearchStudy (2 uses)
hl7.fhir.uv.extensions.r4#5.2.0: SDStatusDerivation (175 uses)

Modifier Extensions:

(none)

Previous Version Comparison:

Comparison with version 3.0.0

IPA Comparison:

n/a

IPS Comparison:

n/a

Validation Flags:

On: autoLoad; Off: hintAboutNonMustSupport, anyExtensionsAllowed, checkAggregation, showReferenceMessages, noExperimentalContent, displayWarnings

Summary:

errors = 0, warn = 364, info = 14, broken links = 88, pinned = 48 (when multiples).

Filename	Errors	Warnings	Hints
Build Errors	88	1	10
/scratch/repo/fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01	0	18	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-CYP2C19	0	74	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample	0	15	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample-withGrouping	0	13	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-compound-heterozygote	0	1	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-diagnostic	0	2	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-report-example	0	36	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-pgxexample	0	13	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-molc	0	3	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-var	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineCNV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineDEL	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineINV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticCNV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticDEL	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticINV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes	0	1	0
/scratch/repo/fsh-generated/resources/Observation-GenotypeExample1	0	2	0
/scratch/repo/fsh-generated/resources/Observation-GenotypeExamplePharmVar	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HER2byImmuneStainExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HER2byImmunoassayExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype1	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype1	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype1	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar01	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar02	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-NormalExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-MultipleRepeatExpansions	0	2	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-PDL1Example	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1001	0	2	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1002	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1003	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1011	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1012	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1013	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1014	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1015	0	2	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1016	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1017	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1018	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1019	0	2	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1020	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1021	0	3	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-var	0	1	0
/scratch/repo/fsh-generated/resources/Observation-RepeatExpansion	0	3	0
/scratch/repo/fsh-generated/resources/Observation-SNVexample	0	2	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial	0	1	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-genotype-hla-a-glstring-r4	0	1	0
/scratch/repo/fsh-generated/resources/Observation-haplotype-hla-a-1-r4	0	1	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq1	0	3	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq3	0	2	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq4	0	2	0
/scratch/repo/fsh-generated/resources/Observation-obs-idh-ex	0	2	0
/scratch/repo/fsh-generated/resources/Observation-obs1-interact-smn1-smn2	0	3	0
/scratch/repo/fsh-generated/resources/Observation-obs2-interact-smn1-smn2	0	3	0
/scratch/repo/fsh-generated/resources/Observation-variant-with-molec-consequences	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindStudyMetadataOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput	0	4	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput	0	10	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput	0	2	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput	0	2	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectVariantsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Procedure-PGXGenomicStudyAnalysis	0	3	0
/scratch/repo/fsh-generated/resources/Procedure-analysisTumorNormalDNA	0	7	0
/scratch/repo/fsh-generated/resources/Procedure-analysisTumorRNA	0	2	0
/scratch/repo/fsh-generated/resources/Procedure-lungMass-analysis1	0	3	0
/scratch/repo/fsh-generated/resources/Procedure-lungMass-analysis2	0	1	0

n/a Show Validation Information

warning

The jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content)

CodeSystem-knowledge-base-cs.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: ' This example code systems provides examples on how to properly display the knowledge base version number. Version numbers should always be followed by the letter v and calendar dates are displayed Month Day Year. For clarity the month SHALL be written in full. ' CONFORMANCE_STATEMENT_WORD

StructureDefinition-coded-annotation.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'If there is a possibility of transporting the content of the note in a structured manner the usage of CodedAnnotation is forbidden and the corresponding data structures SHALL be used. For example, if the text to send resembles the interpretation or impression of the Observation, this guide adds Observation.component slice for conclusion-string which is more appropriate than a note. This would include text like interpretative information (typically canned) about a variant identified in the patient. This slice is defined in the Genomic Base profile, which every observation builds upon. Therefore, this component is a defined slice on all observations profiles defined in this Implementation Guide.' CONFORMANCE_STATEMENT_WORD

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 318, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 405, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 448, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 477, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 505, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 533, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 561, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 589, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 686, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 932, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1031, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1084, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1136, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1188, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1240, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-diagnostic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1292, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 318, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 402, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 449, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 478, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 506, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 534, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 562, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 593, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 702, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 945, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1048, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1101, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1153, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1205, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1257, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genomic-annotation-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1312, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-genotype.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'For Pharmacogenomics, implementers SHOULD send coded haplotypes, and for genotypes (diplotypes) MAY use a simple, human readable grammar of:' CONFORMANCE_STATEMENT_WORD

StructureDefinition-haplotype.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'For Pharmacogenomics, implementers SHOULD send coded haplotypes. Here is an example using PharmVar:' CONFORMANCE_STATEMENT_WORD

StructureDefinition-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 308, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 398, column 244

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StructureDefinition-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1112, column 244

error

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StructureDefinition-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1164, column 244

error

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StructureDefinition-implication.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'Where implications have fields with cardinality > 1, the inclusion of multiple values within a field SHALL indicate an 'AND' condition. An 'OR' condition SHALL be represented by multiple observation instances.' CONFORMANCE_STATEMENT_WORD

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 318, column 244

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error

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error

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StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 474, column 244

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StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 640, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

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StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 696, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 831, column 244

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error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1226, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1278, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1330, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1382, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1433, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1485, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1536, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1588, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-molecular-consequence-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1640, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 318, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 402, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 445, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 474, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 502, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 530, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 558, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 585, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 614, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 646, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 773, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1016, column 244

error

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1115, column 244

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The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1168, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1220, column 244

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1272, column 244

error

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1324, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

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error

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StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1427, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-therapeutic-implication-definitions.html#/html/body/div/div/div/div/div/div/div/table/tr/td/p/a at Line 1483, column 244

error

The link 'StructureDefinition-workflow-supportingInfo.html' for "supportingInfo extension" cannot be resolved HTML_LINK_CHECK_FAILED

StructureDefinition-therapeutic-implication.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'There are two ways to communicate details about a medication whose implication is being described. The profile component medication-assessed is the place to communicate a simple code for the medication. If more detail about the medication is to be shared, use the extension named medication-assessed-reference. The extension can refer to a Medication or MedicationKnowledge resource. This might be used to share specific classification details if they are important as part of the implication being described. It is important to note that since there two ways to do this, implementers SHALL ensure consistent usage. If both the extension and component are used at the same time, they SHALL deliver the same medication. Because this is an international profile, no guidance is provided on drug coding systems.' CONFORMANCE_STATEMENT_WORD

artifacts.html

information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause: 'This example code systems provides examples on how to properly display the knowledge base version number. Version numbers should always be followed by the letter v and calendar dates are displayed Month Day Year. For clarity the month SHALL be written in full.' CONFORMANCE_STATEMENT_WORD

general.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause: 'The GenomicStudy instance SHOULD be referenced from a report and CAN be referenced by various observations.' CONFORMANCE_STATEMENT_WORD

pharmacogenomics.html

information

The html source contains the word 'MAY' but it is not in a text phrase marked as a conformance clause: 'Genotype names such as star-alleles can appear in PGx reports either with or without a full description of the underlying coded haplotypes and observed variants. Genotype names MAY be coded, but will oftentimes be textual descriptions only. PGx guidance is often available at the level of these genotypes.' CONFORMANCE_STATEMENT_WORD

sequencing.html

information

The html source contains the word 'MAY' but it is not in a text phrase marked as a conformance clause: 'For each variant reporting pattern, different components MUST be used to properly define the variant where possible. Other components MAY be used to provide additional information for cross referencing external sources or increasing human readability of the instance.' CONFORMANCE_STATEMENT_WORD

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json Show Validation Information (86)

Path

Severity

Message

Bundle.entry[9].resource/*Observation/CG-IG-HLA-FullBundle-01-10*/.method (l388/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/CG-IG-HLA-FullBundle-01-10*/.component[0].value.ofType(CodeableConcept) (l424/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/CG-IG-HLA-FullBundle-01-11*/.method (l501/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/CG-IG-HLA-FullBundle-01-11*/.component[0].value.ofType(CodeableConcept) (l537/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[11].resource/*Observation/CG-IG-HLA-FullBundle-01-12*/.method (l620/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[11].resource/*Observation/CG-IG-HLA-FullBundle-01-12*/.component[0].value.ofType(CodeableConcept) (l656/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[16].resource/*Observation/CG-IG-HLA-FullBundle-01-17*/.method (l845/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[16].resource/*Observation/CG-IG-HLA-FullBundle-01-17*/.component[0].value.ofType(CodeableConcept) (l881/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[17].resource/*Observation/CG-IG-HLA-FullBundle-01-18*/.method (l958/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[17].resource/*Observation/CG-IG-HLA-FullBundle-01-18*/.component[0].value.ofType(CodeableConcept) (l994/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[18].resource/*Observation/CG-IG-HLA-FullBundle-01-19*/.method (l1077/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[18].resource/*Observation/CG-IG-HLA-FullBundle-01-19*/.component[0].value.ofType(CodeableConcept) (l1113/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[23].resource/*Observation/CG-IG-HLA-FullBundle-01-24*/.method (l1302/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[23].resource/*Observation/CG-IG-HLA-FullBundle-01-24*/.component[0].value.ofType(CodeableConcept) (l1338/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[24].resource/*Observation/CG-IG-HLA-FullBundle-01-25*/.method (l1415/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[24].resource/*Observation/CG-IG-HLA-FullBundle-01-25*/.component[0].value.ofType(CodeableConcept) (l1451/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[25].resource/*Observation/CG-IG-HLA-FullBundle-01-26*/.method (l1534/c10)

warning

Unable to check whether the code is in the value set '' because the code system https://www.ncbi.nlm.nih.gov/gtr was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[25].resource/*Observation/CG-IG-HLA-FullBundle-01-26*/.component[0].value.ofType(CodeableConcept) (l1570/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-CYP2C19.json Show Validation Information (755)

Path

Severity

Message

Bundle.entry[0].resource/*Observation/dv-5c7e9e1ca62b5*/.component[1].value.ofType(CodeableConcept) (l94/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[1].resource/*Observation/dv-5c7e9e1ca6342*/.component[1].value.ofType(CodeableConcept) (l276/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[2].resource/*Observation/dv-5c7e9e1ca63bf*/.component[1].value.ofType(CodeableConcept) (l458/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[3].resource/*Observation/dv-5c7e9e1ca643a*/.component[1].value.ofType(CodeableConcept) (l640/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[4].resource/*Observation/dv-5c7e9e1ca64b5*/.component[1].value.ofType(CodeableConcept) (l822/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/dv-5c7e9e1ca6531*/.component[1].value.ofType(CodeableConcept) (l1004/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/dv-5c7e9e1ca65ac*/.component[1].value.ofType(CodeableConcept) (l1186/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[7].resource/*Observation/dv-5c7e9e1ca6627*/.component[1].value.ofType(CodeableConcept) (l1368/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[8].resource/*Observation/dv-5c7e9e1ca66a1*/.component[1].value.ofType(CodeableConcept) (l1550/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/dv-5c7e9e1ca671c*/.component[1].value.ofType(CodeableConcept) (l1732/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/dv-5c7e9e1ca6797*/.component[1].value.ofType(CodeableConcept) (l1914/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[11].resource/*Observation/dv-5c7e9e1ca6812*/.component[1].value.ofType(CodeableConcept) (l2096/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[12].resource/*Observation/dv-5c7e9e1ca688c*/.component[1].value.ofType(CodeableConcept) (l2278/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[13].resource/*Observation/dv-5c7e9e1ca6922*/.component[1].value.ofType(CodeableConcept) (l2460/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[14].resource/*Observation/dv-5c7e9e1ca69a3*/.component[1].value.ofType(CodeableConcept) (l2642/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[15].resource/*Observation/dv-5c7e9e1ca6a1d*/.component[1].value.ofType(CodeableConcept) (l2824/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[16].resource/*Observation/dv-5c7e9e1ca6a97*/.component[1].value.ofType(CodeableConcept) (l3006/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[17].resource/*Observation/dv-5c7e9e1ca6b11*/.component[1].value.ofType(CodeableConcept) (l3188/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[18].resource/*Observation/dv-5c7e9e1ca6b86*/.component[1].value.ofType(CodeableConcept) (l3370/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[19].resource/*Observation/dv-5c7e9e1ca6c31*/.component[1].value.ofType(CodeableConcept) (l3552/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[20].resource/*Observation/dv-5c7e9e1ca6ccc*/.component[1].value.ofType(CodeableConcept) (l3734/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[21].resource/*Observation/dv-5c7e9e1ca6d4b*/.component[1].value.ofType(CodeableConcept) (l3916/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[22].resource/*Observation/dv-5c7e9e1ca6de3*/.component[1].value.ofType(CodeableConcept) (l4098/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[23].resource/*Observation/dv-5c7e9e1ca6e86*/.component[1].value.ofType(CodeableConcept) (l4280/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[24].resource/*Observation/dv-5c7e9e1ca6f11*/.component[1].value.ofType(CodeableConcept) (l4462/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[25].resource/*Observation/dv-5c7e9e1ca6fa5*/.component[1].value.ofType(CodeableConcept) (l4644/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[26].resource/*Observation/dv-5c7e9e1ca7025*/.component[1].value.ofType(CodeableConcept) (l4826/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[27].resource/*Observation/dv-5c7e9e1ca70a2*/.component[1].value.ofType(CodeableConcept) (l5008/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[28].resource/*Observation/dv-5c7e9e1ca7141*/.component[1].value.ofType(CodeableConcept) (l5190/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[29].resource/*Observation/dv-5c7e9e1ca71bf*/.component[1].value.ofType(CodeableConcept) (l5372/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[30].resource/*Observation/dv-5c7e9e1ca724a*/.component[1].value.ofType(CodeableConcept) (l5554/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[31].resource/*Observation/dv-5c7e9e1ca72e4*/.component[1].value.ofType(CodeableConcept) (l5736/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[32].resource/*Observation/dv-5c7e9e1ca7377*/.component[1].value.ofType(CodeableConcept) (l5918/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[33].resource/*Observation/dv-5c7e9e1ca740a*/.component[1].value.ofType(CodeableConcept) (l6100/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[34].resource/*Observation/dv-5c7e9e1ca7497*/.component[1].value.ofType(CodeableConcept) (l6282/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[35].resource/*Observation/dv-5c7e9e1ca7513*/.component[1].value.ofType(CodeableConcept) (l6464/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[36].resource/*Observation/dv-5c7e9e1ca758e*/.component[1].value.ofType(CodeableConcept) (l6646/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[37].resource/*Observation/dv-5c7e9e1ca7609*/.component[1].value.ofType(CodeableConcept) (l6828/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[38].resource/*Observation/dv-5c7e9e1ca7684*/.component[1].value.ofType(CodeableConcept) (l7010/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[39].resource/*Observation/dv-5c7e9e1ca76ff*/.component[1].value.ofType(CodeableConcept) (l7192/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[40].resource/*Observation/dv-5c7e9e1ca7779*/.component[1].value.ofType(CodeableConcept) (l7374/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[41].resource/*Observation/dv-5c7e9e1ca77f4*/.component[1].value.ofType(CodeableConcept) (l7556/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[42].resource/*Observation/dv-5c7e9e1ca786f*/.component[1].value.ofType(CodeableConcept) (l7738/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[43].resource/*Observation/dv-5c7e9e1ca78eb*/.component[1].value.ofType(CodeableConcept) (l7920/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[44].resource/*Observation/dv-5c7e9e1ca7967*/.component[1].value.ofType(CodeableConcept) (l8102/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[45].resource/*Observation/dv-5c7e9e1ca79ef*/.component[1].value.ofType(CodeableConcept) (l8284/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[46].resource/*Observation/dv-5c7e9e1ca7a79*/.component[1].value.ofType(CodeableConcept) (l8466/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[47].resource/*Observation/dv-5c7e9e1ca7afb*/.component[1].value.ofType(CodeableConcept) (l8648/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[48].resource/*Observation/dv-5c7e9e1ca7bcb*/.component[1].value.ofType(CodeableConcept) (l8830/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[49].resource/*Observation/dv-5c7e9e1ca7c49*/.component[1].value.ofType(CodeableConcept) (l9012/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[50].resource/*Observation/dv-5c7e9e1ca7cd3*/.component[1].value.ofType(CodeableConcept) (l9194/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[51].resource/*Observation/dv-5c7e9e1ca7d94*/.component[1].value.ofType(CodeableConcept) (l9376/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[52].resource/*Observation/dv-5c7e9e1ca7e45*/.component[1].value.ofType(CodeableConcept) (l9558/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[53].resource/*Observation/dv-5c7e9e1ca7ed6*/.component[1].value.ofType(CodeableConcept) (l9740/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[54].resource/*Observation/dv-5c7e9e1ca7f69*/.component[1].value.ofType(CodeableConcept) (l9922/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[55].resource/*Observation/dv-5c7e9e1ca7ffd*/.component[1].value.ofType(CodeableConcept) (l10104/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[56].resource/*Observation/dv-5c7e9e1ca8085*/.component[1].value.ofType(CodeableConcept) (l10286/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[57].resource/*Observation/dv-5c7e9e1ca811f*/.component[1].value.ofType(CodeableConcept) (l10468/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[58].resource/*Observation/dv-5c7e9e1ca81b9*/.component[1].value.ofType(CodeableConcept) (l10650/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[59].resource/*Observation/dv-5c7e9e1ca8252*/.component[1].value.ofType(CodeableConcept) (l10832/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[60].resource/*Observation/dv-5c7e9e1ca82e4*/.component[1].value.ofType(CodeableConcept) (l11014/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[61].resource/*Observation/dv-5c7e9e1ca837c*/.component[1].value.ofType(CodeableConcept) (l11196/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[62].resource/*Observation/dv-5c7e9e1ca8410*/.component[1].value.ofType(CodeableConcept) (l11378/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[63].resource/*Observation/dv-5c7e9e1ca8493*/.component[1].value.ofType(CodeableConcept) (l11560/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[64].resource/*Observation/dv-5c7e9e1ca8514*/.component[1].value.ofType(CodeableConcept) (l11742/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[65].resource/*Observation/dv-5c7e9e1ca8596*/.component[1].value.ofType(CodeableConcept) (l11924/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[66].resource/*Observation/dv-5c7e9e1ca8618*/.component[1].value.ofType(CodeableConcept) (l12106/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[67].resource/*Observation/dv-5c7e9e1ca869c*/.component[1].value.ofType(CodeableConcept) (l12288/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[68].resource/*Observation/dv-5c7e9e1ca871e*/.component[1].value.ofType(CodeableConcept) (l12470/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[69].resource/*Observation/dv-5c7e9e1ca879f*/.component[1].value.ofType(CodeableConcept) (l12652/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[70].resource/*Observation/dv-5c7e9e1ca8820*/.component[1].value.ofType(CodeableConcept) (l12834/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[71].resource/*Observation/dv-5c7e9e1ca88a5*/.component[1].value.ofType(CodeableConcept) (l13016/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[72].resource/*Observation/dv-5c7e9e1ca8927*/.component[1].value.ofType(CodeableConcept) (l13198/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[73].resource/*Observation/dv-5c7e9e1ca89a8*/.component[1].value.ofType(CodeableConcept) (l13380/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-cgexample.json Show Validation Information (95)

Path

Severity

Message

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[0].value.ofType(CodeableConcept) (l230/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[1].value.ofType(CodeableConcept) (l249/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[2].value.ofType(CodeableConcept) (l268/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[3].value.ofType(CodeableConcept) (l286/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[5].value.ofType(CodeableConcept) (l322/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/projects/SNP|137 was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[5].value.ofType(CodeableConcept).coding[0].system (l322/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' version '137' could not be found, so the code cannot be validated. Valid versions: [2.0.1] (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/dis-path*/.component[1].value.ofType(CodeableConcept) (l671/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://purl.obolibrary.org/obo/mondo.owl was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/complex-component-D*/.component[0].value.ofType(CodeableConcept) (l918/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/complex-component-D*/.component[1].value.ofType(CodeableConcept) (l937/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/complex-component-E*/.component[0].value.ofType(CodeableConcept) (l1075/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar|??? was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/complex-component-E*/.component[0].value.ofType(CodeableConcept).coding[0].system (l1075/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' version '???' could not be found, so the code cannot be validated. Valid versions: [1.0.1] (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/complex-component-E*/.component[1].value.ofType(CodeableConcept) (l1095/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[12].resource/*Observation/genotype*/.value.ofType(CodeableConcept) (l1237/c10)

warning

Unable to check whether the code is in the value set '' because the code system http://www.pharmvar.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[12].resource/*Observation/genotype*/.component[0].value.ofType(CodeableConcept) (l1264/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[12].resource/*Observation/genotype*/.component[1].value.ofType(CodeableConcept) (l1283/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json Show Validation Information (106)

Path

Severity

Message

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[0].value.ofType(CodeableConcept) (l234/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[1].value.ofType(CodeableConcept) (l253/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[2].value.ofType(CodeableConcept) (l272/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[3].value.ofType(CodeableConcept) (l290/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[5].value.ofType(CodeableConcept) (l326/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/projects/SNP was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/dis-path-1a*/.component[1].value.ofType(CodeableConcept) (l646/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://purl.obolibrary.org/obo/mondo.owl was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/complex-component-D-1a*/.component[0].value.ofType(CodeableConcept) (l893/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/complex-component-D-1a*/.component[1].value.ofType(CodeableConcept) (l912/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/complex-component-E-1a*/.component[0].value.ofType(CodeableConcept) (l1050/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/complex-component-E-1a*/.component[1].value.ofType(CodeableConcept) (l1069/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[13].resource/*Observation/genotype-1a*/.value.ofType(CodeableConcept) (l1278/c10)

warning

Unable to check whether the code is in the value set '' because the code system http://www.pharmvar.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[13].resource/*Observation/genotype-1a*/.component[0].value.ofType(CodeableConcept) (l1305/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[13].resource/*Observation/genotype-1a*/.component[1].value.ofType(CodeableConcept) (l1324/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS.json Show Validation Information (9)

Path

Severity

Message

Bundle.entry[0].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-1*/.component[0].value.ofType(CodeableConcept) (l74/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[1].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-2*/.component[0].value.ofType(CodeableConcept) (l221/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[2].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-3*/.value.ofType(CodeableConcept) (l347/c10)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-compound-heterozygote.json Show Validation Information (9)

Path

Severity

Message

Bundle.entry[2].resource/*Observation/Inline-Instance-for-compound-heterozygote-3*/.value.ofType(CodeableConcept) (l263/c10)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-oncology-diagnostic.json Show Validation Information (28)

Path

Severity

Message

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-diagnostic-5*/.component[2].value.ofType(CodeableConcept) (l304/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-diagnostic-5*/.component[4].value.ofType(CodeableConcept) (l344/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-oncology-report-example.json Show Validation Information (126)

Path

Severity

Message

Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[1].value.ofType(CodeableConcept) (l188/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[4].value.ofType(CodeableConcept) (l248/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[6].value.ofType(CodeableConcept) (l288/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[1].value.ofType(CodeableConcept) (l453/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[4].value.ofType(CodeableConcept) (l513/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[5].value.ofType(CodeableConcept) (l533/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[1].value.ofType(CodeableConcept) (l698/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[4].value.ofType(CodeableConcept) (l758/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[6].value.ofType(CodeableConcept) (l798/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[1].value.ofType(CodeableConcept) (l963/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[4].value.ofType(CodeableConcept) (l1023/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[5].value.ofType(CodeableConcept) (l1043/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[1].value.ofType(CodeableConcept) (l1208/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[4].value.ofType(CodeableConcept) (l1268/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[5].value.ofType(CodeableConcept) (l1288/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[1].value.ofType(CodeableConcept) (l1453/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[4].value.ofType(CodeableConcept) (l1513/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[5].value.ofType(CodeableConcept) (l1533/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[1].value.ofType(CodeableConcept) (l1698/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[4].value.ofType(CodeableConcept) (l1757/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[6].value.ofType(CodeableConcept) (l1796/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[1].value.ofType(CodeableConcept) (l1961/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[4].value.ofType(CodeableConcept) (l2020/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[6].value.ofType(CodeableConcept) (l2059/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[1].value.ofType(CodeableConcept) (l2224/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[4].value.ofType(CodeableConcept) (l2283/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[6].value.ofType(CodeableConcept) (l2322/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[1].value.ofType(CodeableConcept) (l2487/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[4].value.ofType(CodeableConcept) (l2546/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[5].value.ofType(CodeableConcept) (l2566/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[1].value.ofType(CodeableConcept) (l2731/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[4].value.ofType(CodeableConcept) (l2790/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[5].value.ofType(CodeableConcept) (l2810/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[1].value.ofType(CodeableConcept) (l2975/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[4].value.ofType(CodeableConcept) (l3034/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[6].value.ofType(CodeableConcept) (l3073/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4.json Show Validation Information (99)

Path

Severity

Message

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-6*/.component[3].value.ofType(CodeableConcept) (l418/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-7*/.component[3].value.ofType(CodeableConcept) (l574/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-8*/.component[2].value.ofType(CodeableConcept) (l710/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping.json Show Validation Information (115)

Path

Severity

Message

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-6*/.component[3].value.ofType(CodeableConcept) (l418/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-7*/.component[3].value.ofType(CodeableConcept) (l574/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-8*/.component[2].value.ofType(CodeableConcept) (l710/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-pgxexample.json Show Validation Information (74)

Path

Severity

Message

Bundle.entry[6].resource/*Observation/genotype-pgx-example*/.value.ofType(CodeableConcept) (l303/c10)

warning

Unable to check whether the code is in the value set '' because the code system http://www.pharmvar.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[6].resource/*Observation/genotype-pgx-example*/.component[0].value.ofType(CodeableConcept) (l334/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[7].resource/*Observation/haplotype-1-pgx-example*/.value.ofType(CodeableConcept) (l399/c10)

warning

Unable to check whether the code is in the value set '' because the code system http://www.pharmvar.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[7].resource/*Observation/haplotype-1-pgx-example*/.component[0].value.ofType(CodeableConcept) (l427/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[8].resource/*Observation/haplotype-2-pgx-example*/.value.ofType(CodeableConcept) (l492/c10)

warning

Unable to check whether the code is in the value set '' because the code system http://www.pharmvar.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[8].resource/*Observation/haplotype-2-pgx-example*/.component[0].value.ofType(CodeableConcept) (l520/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/variant-1-pgx-example*/.component[0].value.ofType(CodeableConcept) (l613/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[9].resource/*Observation/variant-1-pgx-example*/.component[1].value.ofType(CodeableConcept) (l632/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/projects/SNP was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[0].value.ofType(CodeableConcept) (l766/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[1].value.ofType(CodeableConcept) (l786/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[2].value.ofType(CodeableConcept) (l804/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/projects/SNP was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[11].resource/*MolecularSequence/sequence-1-pgx-example*/.referenceSeq.referenceSeqId (l871/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[12].resource/*MolecularSequence/sequence-2-pgx-example*/.referenceSeq.referenceSeqId (l897/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.json Show Validation Information (35)

Path

Severity

Message

Bundle.entry[0].resource/*Observation/dv-5c7e9e1ca8252*/.component[1].value.ofType(CodeableConcept) (l94/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Bundle.entry[1].resource/*Observation/dv-5c7e9e1ca82e4*/.component[1].value.ofType(CodeableConcept) (l276/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-ATR-insertion-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l81/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l100/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[3].value.ofType(CodeableConcept) (l119/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-ATR-insertion-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l79/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[4].value.ofType(CodeableConcept) (l116/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[8].value.ofType(CodeableConcept) (l183/c8)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-GenotypeExample1.json Show Validation Information (9)

Path

Severity

Message

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l65/c8)

warning

Unable to check whether the code is in the value set '' because the code system https://iscn.karger.com was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-ISCN-NormalExample.json Show Validation Information (1)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l65/c8)

warning

Unable to check whether the code is in the value set '' because the code system https://iscn.karger.com was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-MSH2-del-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l80/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-MSH2-del-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[1].value.ofType(CodeableConcept) (l63/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l82/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[3].value.ofType(CodeableConcept) (l101/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-MultipleRepeatExpansions.json Show Validation Information (1)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l47/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l81/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-NOTCH1-uncertain-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l81/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l100/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-NOTCH1-uncertain-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l63/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[4].value.ofType(CodeableConcept) (l115/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[8].value.ofType(CodeableConcept) (l182/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-NTHL1-snv-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l80/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-NTHL1-snv-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l63/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[3].value.ofType(CodeableConcept) (l100/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[4].value.ofType(CodeableConcept) (l119/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-PDL1Example.json Show Validation Information (9)

Path

Severity

Message

Observation.component[2].value.ofType(CodeableConcept) (l83/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-Pgx-geno-1001.json Show Validation Information (9)

Path

Severity

Message

Observation.value.ofType(CodeableConcept) (l56/c4)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[0].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-Pgx-geno-1002.json Show Validation Information (9)

Path

Path

Severity

Message

Observation.component[3].value.ofType(CodeableConcept) (l101/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[4].value.ofType(CodeableConcept) (l120/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-Pgx-var-1016.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[7].value.ofType(CodeableConcept) (l161/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[8].value.ofType(CodeableConcept) (l180/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-Pgx-var-1017.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[7].value.ofType(CodeableConcept) (l161/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[8].value.ofType(CodeableConcept) (l180/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-Pgx-var-1018.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[7].value.ofType(CodeableConcept) (l161/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[8].value.ofType(CodeableConcept) (l180/c8)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l60/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial.json Show Validation Information (9)

Path

Severity

Message

Observation.component[2].value.ofType(CodeableConcept) (l80/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://clinicaltrials.gov was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-ROS1-Fusion-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l58/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-RepeatExpansion.json Show Validation Information (1)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l47/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l81/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[5].value.ofType(CodeableConcept) (l137/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/clinvar was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-SNVexample.json Show Validation Information (5)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l81/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[6].value.ofType(CodeableConcept) (l194/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-STAG2-insertion-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l81/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l100/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-STAG2-insertion-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l63/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[3].value.ofType(CodeableConcept) (l97/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l81/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l100/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-ZFHX3-uncertain-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l63/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[4].value.ofType(CodeableConcept) (l115/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[8].value.ofType(CodeableConcept) (l182/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-genotype-hla-a-glstring-r4.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l83/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-haplotype-hla-a-1-r4.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l75/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-molec-conseq1.json Show Validation Information (1)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l72/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[1].value.ofType(CodeableConcept) (l91/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l115/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-molec-conseq2.json Show Validation Information (1)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l92/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l111/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-molec-conseq3.json Show Validation Information (1)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l92/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[2].value.ofType(CodeableConcept) (l111/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Observation-molec-conseq4.json Show Validation Information (1)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept) (l72/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Observation.component[1].value.ofType(CodeableConcept) (l91/c8)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l86/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Parameters-FindStudyMetadataOutput.json Show Validation Information (1)

Path

Severity

Message

Parameters.parameter[0].part[4].value.ofType(CodeableConcept) (l34/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput.json Show Validation Information (5)

Path

Severity

Message

Parameters.parameter[1].resource/*Observation/variantExample2*/.component[1].value.ofType(CodeableConcept) (l195/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput.json Show Validation Information (5)

Path

Severity

Message

Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.value.ofType(CodeableConcept) (l63/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.pharmvar.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.component[0].value.ofType(CodeableConcept) (l86/c18)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.value.ofType(CodeableConcept) (l159/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.pharmvar.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.component[0].value.ofType(CodeableConcept) (l182/c18)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput.json Show Validation Information (11)

Path

Severity

Message

Parameters.parameter[0].resource/*Observation/MC1*/.component[0].value.ofType(CodeableConcept) (l82/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[0].resource/*Observation/MC1*/.component[1].value.ofType(CodeableConcept) (l101/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[0].resource/*Observation/MC1*/.component[2].value.ofType(CodeableConcept) (l125/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[1].resource/*Observation/MC2*/.component[1].value.ofType(CodeableConcept) (l235/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[1].resource/*Observation/MC2*/.component[2].value.ofType(CodeableConcept) (l254/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[2].resource/*Observation/MC3*/.component[1].value.ofType(CodeableConcept) (l364/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[2].resource/*Observation/MC3*/.component[2].value.ofType(CodeableConcept) (l383/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[3].resource/*Observation/MC4*/.component[0].value.ofType(CodeableConcept) (l473/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[3].resource/*Observation/MC4*/.component[1].value.ofType(CodeableConcept) (l492/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Parameters.parameter[0].resource/*Observation/MC1*/.derivedFrom[0].parameter[0].resource/*Observation/variantExampleMC*/.component[1].value.ofType(CodeableConcept) (l596/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput.json Show Validation Information (3)

Path

Severity

Message

Parameters.parameter[0].part[2].resource/*Observation/Genotype7*/.component[0].value.ofType(CodeableConcept) (l91/c18)

Path

Severity

Message

Parameters.parameter[1].resource/*Observation/variantExample*/.component[1].value.ofType(CodeableConcept) (l194/c14)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Parameters-FindSubjectVariantsOutput.json Show Validation Information (3)

Path

Severity

Message

Parameters.parameter[1].part[2].resource/*Observation/dv-5a7f781e83514*/.component[1].value.ofType(CodeableConcept) (l120/c18)

warning

Unable to check whether the code is in the value set '' because the code system http://www.ncbi.nlm.nih.gov/refseq was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Procedure-PGXGenomicStudyAnalysis.json Show Validation Information (1)

Path

Severity

Message

Procedure.extension[2].extension[1].value.ofType(CodeableConcept) (l51/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[2].extension[2].value.ofType(CodeableConcept) (l63/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[2].extension[3].value.ofType(CodeableConcept) (l75/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Procedure-analysisTumorNormalDNA.json Show Validation Information (1)

Path

Severity

Message

Procedure.extension[0].extension[1].value.ofType(CodeableConcept) (l30/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[0].extension[2].value.ofType(CodeableConcept) (l42/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[0].extension[3].value.ofType(CodeableConcept) (l54/c12)

warning

Unable to check whether the code is in the value set '' because the code system http://www.genenames.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[3].value.ofType(CodeableConcept) (l98/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[4].value.ofType(CodeableConcept) (l110/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[5].value.ofType(CodeableConcept) (l122/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[6].value.ofType(CodeableConcept) (l134/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Procedure-analysisTumorRNA.json Show Validation Information (1)

Path

Severity

Message

Procedure.extension[2].value.ofType(CodeableConcept) (l44/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[3].value.ofType(CodeableConcept) (l56/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Procedure-lungMass-analysis1.json Show Validation Information (1)

Path

Severity

Message

Procedure.extension[2].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[3].value.ofType(CodeableConcept) (l57/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Procedure.extension[4].value.ofType(CodeableConcept) (l69/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

fsh-generated/resources/Procedure-lungMass-analysis2.json Show Validation Information (1)

Path

Severity

Message

Procedure.extension[2].value.ofType(CodeableConcept) (l45/c8)

warning

Unable to check whether the code is in the value set '' because the code system http://www.sequenceontology.org was not found (from https://tx-nordics.fhir.org/fhir/r4)

Suppressed Messages (Warnings, hints, broken links)

An example of DiagnosticImplication<Observation>.derivedFrom() that we slice to only allow our profiles. In this example, we did not define specific Variant instances and just refer to some variants by identifier (rather than a full resource), so ignoring these warnings

INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication% (1 uses)
INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication% (1 uses)

CG has reviewed these CodeSystems and have decided to keep this in our IG

INFORMATION: CodeSystem/clinvar-evidence-level-custom-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/coded-annotation-types-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-change-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-data-format-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-method-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-status-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/knowledge-base-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/molecular-biomarker-ontology-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/pharmgkb-evidence-level-custom-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/tbd-codes-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)

Each of these codes have been validated (as of Jul 5 2024), so suppressing these warnings until HPO becomes a supported code system.

WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].target: Target Code System http://www.sequenceontology.org doesn't have all content (content = not-present), so the target codes cannot be checked (1 uses)

GenomicReport<DiagnosticReport>.result referencing Observation instances. We have defined our report profile to slice .result with our Observation profiles. Slicing is open, this informational message can be ignored

INFORMATION: Bundle/bundle-cgexample-withGrouping: Bundle.entry[0].resource/*DiagnosticReport/report-withGrouping*/.result[4]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource/*DiagnosticReport/Inline-Instance-for-oncologyexamples-r4-withGrouping-15*/.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource/*DiagnosticReport/Inline-Instance-for-oncologyexamples-r4-withGrouping-15*/.result[6]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[2]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)

OCT 2025 - THE VALUESET IN THE WARNING BECAME 'null'

WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[0].target[0].code: The code 'SO:0002073' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[1].target[0].code: The code 'SO:0000159' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[2].target[0].code: The code 'SO:1000035' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[3].target[0].code: The code 'SO:0000667' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[4].target[0].code: The code 'SO:1000032' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[5].target[0].code: The code 'SO:1000036' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)
WARNING: ConceptMap/dna-change-type-map: ConceptMap.group[0].element[6].target[0].code: The code 'SO:1000002' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null' (1 uses)

Observation.component instances that do not match our slices, but is OK (and this is ok since we use open slicing)

INFORMATION: Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[18]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
INFORMATION: Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[19]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
INFORMATION: Observation/variant-with-molec-consequences: Observation.component[9]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)

Our Observation profiles require a code from the Observation Category value set (LAB), but in some cases require additional codes from other value sets. Since this binding is "Preferred" the resources are still conformant, so we are Suppressing these messages.

None of the codings provided are in the value set 'Observation Category Codes' (http://hl7.org/fhir/ValueSet/observation-category|4.0.1), and a coding is recommended to come from this value set (codes = http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs#biomarker-category) (5 uses)
None of the codings provided are in the value set 'Observation Category Codes' (http://hl7.org/fhir/ValueSet/observation-category|4.0.1), and a coding is recommended to come from this value set (codes = http://terminology.hl7.org/CodeSystem/v2-0074#GE) (177 uses)

Pinned versions have been reviewed:

Pinned the version of http://hl7.org/fhir/StructureDefinition/% (48 uses)

Suppress all references to example CodeSystems

A definition for CodeSystem 'http://example.org/% (11 uses)

The IG Validator returns different warnings on this error: https://github.com/HL7/fhir-ig-publisher/issues/420 - in short, the validator returns the "among choices" profiles in a different order different times, so suppressing by wildcard

Found multiple matching profiles for Task/med-usage-impact-task-pgx-example among choices% (1 uses)
Found multiple matching profiles for Task/usage-1a among choices:% (1 uses)

The following code system are not discoverable because they are code systems in THO, but THO doesn't define the codes. They have been checked and the identifiers are correct

A definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated (3 uses)
A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. No versions of this code system are known (5 uses)
A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (1 uses)
A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (3 uses)
A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated (8 uses)
A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known (19 uses)
A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.31.0' could not be found, so the code cannot be validated. No versions of this code system are known (0 uses)
A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated% (94 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated (15 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' version '???' could not be found, so the code cannot be validated. No versions of this code system are known (0 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated (3 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' version '137' could not be found, so the code cannot be validated. No versions of this code system are known (0 uses)
A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (152 uses)
A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated (9 uses)
A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (73 uses)
A definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validated (2 uses)
A definition for CodeSystem 'https://www.ncbi.nlm.nih.gov/gtr' could not be found, so the code cannot be validated (9 uses)

The mappings in this concept map have been human reviewed and is correct

INFORMATION: ConceptMap/dna-change-type-map: ConceptMap.group[0].source: Source Code System http://loinc.org is only supported on the terminology server, so the source codes are not validated for performance reasons (0 uses)

These URLs have been validated and are apporpriately used in our examples

No definition could be found for URL value 'http://slk-kliniken.de/fhir/namingSystem/tissueID' (1 uses)
No definition could be found for URL value 'https://civicdb.org/evidence/2994/summary' (2 uses)
No definition could be found for URL value 'https://civicdb.org/evidence/7282/summary' (1 uses)
No definition could be found for URL value 'https://civicdb.org/molecular-profiles/2562/summary' (1 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-clopidogrel-and-cyp2c19' (2 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-selective-serotonin-reuptake-inhibitors-and-cyp2d6-and-cyp2c19/' (2 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-tricyclic-antidepressants-and-cyp2d6-and-cyp2c19/' (1 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-voriconazole-and-cyp2c19/' (1 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-warfarin-and-cyp2c9-and-vkorc1/' (1 uses)
No definition could be found for URL value 'https://gl.nmdp.org/imgt-hla/3.23.0/multilocus-unphased-genotype/ex' (1 uses)
No definition could be found for URL value 'https://pubmed.ncbi.nlm.nih.gov/29614695/' (3 uses)
No definition could be found for URL value 'https://pubmed.ncbi.nlm.nih.gov/33927380/' (3 uses)
No definition could be found for URL value 'https://www.cancer.net/cancer-types/lung-cancer-non-small-cell/types-treatment' (3 uses)
No definition could be found for URL value 'https://www.jmdjournal.org/cms/attachment/ee43a71b-81de-4cb3-ac5e-2fb9a7d41491/gr2.jpg' (4 uses)
No definition could be found for URL value 'https://www.ncbi.nlm.nih.gov/clinvar/variation/53685/#clinical-assertions' (1 uses)
No definition could be found for URL value 'https://www.ncbi.nlm.nih.gov/gene/545#:~:text=ATR%20may%20function%20as%20an,radiation%20when%20ATM%20is%20deficient' (2 uses)

These slice messages have been reviewed, and our StructureDefinition apporpriately defines the slices of extension, and examples look valid. Have asked for feedback here: https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/slicing.20in.20Observation.2Ecomponent.2Eextension.20information.20help.3F

INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-9*/.component[3].extension[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-14*/.component[0].extension[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication% (1 uses)

These slice messages that have been reviewed. Each of these refer to (via derivedFrom) a Variant, and are a valid Variant instance. They are similar to ones mentioned on https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/slicing.20in.20Observation.2Ecomponent.2Eextension.20information.20help.3F

INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)

This version number has been validated

WARNING: Observation/haplotype-hla-a-1-r4: Observation.value.ofType(CodeableConcept).coding[0].system: A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.31.0' could not be found, so the code cannot be validated. No versions of this code system are known (1 uses)

We define several experimental CodeSystems that we use, so OK to suppress this for all IG defined CSs, https://chat.fhir.org/#narrow/channel/179202-terminology/topic/Overuse.20of.20the.20Experimental.20flag, https://confluence.hl7.org/x/LKOZCQ

Reference to experimental CodeSystem http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/% (283 uses)
Reference to experimental CodeSystem http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs% (11 uses)

not defined in this IG, so it must be a problem upstream

The extension http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet|5.2.0 is deprecated (1 uses)

Errors sorted by type

MSG_DEPENDS_ON_DEPRECATED_NOTE

fsh-generated/resources/StructureDefinition-genomic-report.json

The extension http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database|5.2.0 is deprecated with the note: 'This extension has been replaced by the profiles and extensions defined in the "Genomics Reporting Guide" (https://hl7.org/fhir/uv/genomics-reporting/)'

fsh-generated/resources/StructureDefinition-genomic-report.json

The extension http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-glstring|5.2.0 is deprecated with the note: 'This extension has been replaced by the profiles and extensions defined in the "Genomics Reporting Guide" (https://hl7.org/fhir/uv/genomics-reporting/)'

VALUESET_INCLUDE_CS_CONTENT

fsh-generated/resources/ValueSet-molecular-biomarker-code-vs.json

The value set references CodeSystem 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' which has status 'fragment'

VALUESET_INC_NO_BATCH_ON_SERVER

fsh-generated/resources/ValueSet-condition-inheritance-mode-vs.json

The concepts in the value set include have not been validated because the terminology server https://tx-nordics.fhir.org/fhir/r4 does not support batch validation (tests version < 1.7.8)