SMART Health Cards: Vaccination & Testing Implementation Guide
1.0.0 - STU1

SMART Health Cards: Vaccination &amp; Testing Implementation Guide, published by HL7 International / Public Health. This guide is not an authorized publication; it is the continuous build for version 1.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-shc-vaccination-ig/ and changes regularly. See the Directory of published versions

## ValueSet: LOINCs identifying qualitative COVID lab tests

Official URL: http://hl7.org/fhir/uv/shc-vaccination/ValueSet/lab-qualitative-test-covid | Version: 1.0.0
Standards status: Trial-use | Maturity Level: 4 | Computable Name: LabQualitativeTestCovidValueSet
Copyright/Legal: This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2022, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc

This value set includes a subset of the LOINCs found at https://loinc.org/sars-cov-2-and-covid-19/ that identify COVID-19-related laboratory tests. Only those laboratory tests that include qualitative results we believe to be useful in SMART Health Cards are included.qualitative results we believe to be useful in SMART Health Cards are included.

References

- COVID-19 Laboratory Result Observation Profile - Allowable Data

### Logical Definition (CLD)

- Include these codes as defined in `http://loinc.org`

  Code | Display
  94307-6 | SARS-CoV-2 N gene Spec Ql NAA N1
  94308-4 | SARS-CoV-2 N gene Spec Ql NAA N2
  94309-2 | SARS-CoV-2 RNA Spec Ql NAA+probe
  94310-0 | SARS-related CoV N Spec Ql NAA N3
  94314-2 | SARS-CoV-2 RdRp Spec Ql NAA+probe
  94315-9 | SARS-rel CoV E gene Spec Ql NAA+probe
  94316-7 | SARS-CoV-2 N gene Spec Ql NAA+probe
  94500-6 | SARS-CoV-2 RNA Resp Ql NAA+probe
  94502-2 | SARS-rel CoV RNA Resp Ql NAA+probe
  94507-1 | SARS-CoV-2 IgG SerPlBld Ql IA.rapid
  94508-9 | SARS-CoV-2 IgM SerPlBld Ql IA.rapid
  94532-9 | SARS-rel CoV+MERS RNA Resp Ql NAA+probe
  94533-7 | SARS-CoV-2 N gene Resp Ql NAA+probe
  94534-5 | SARS-CoV-2 RdRp Resp Ql NAA+probe
  94547-7 | SARS-CoV-2 IgG+IgM SerPl Ql IA
  94558-4 | SARS-CoV-2 Ag Resp Ql IA.rapid
  94559-2 | SARS-CoV-2 ORF1ab Resp Ql NAA+probe
  94562-6 | SARS-CoV-2 IgA SerPl Ql IA
  94563-4 | SARS-CoV-2 IgG SerPl Ql IA
  94564-2 | SARS-CoV-2 IgM SerPl Ql IA
  94565-9 | SARS-CoV-2 RNA Nph Ql NAA+non-probe
  94639-2 | SARS-CoV-2 ORF1ab Spec Ql NAA+probe
  94640-0 | SARS-CoV-2 S gene Resp Ql NAA+probe
  94641-8 | SARS-CoV-2 S gene Spec Ql NAA+probe
  94647-5 | SARSr-CoV RNA Spec Ql NAA+probe
  94660-8 | SARS-CoV-2 RNA SerPl Ql NAA+probe
  94756-4 | SARS-CoV-2 N gene Resp Ql NAA N1
  94757-2 | SARS-CoV-2 N gene Resp Ql NAA N2
  94758-0 | SARS-rel CoV E gene Resp Ql NAA+probe
  94759-8 | SARS-CoV-2 RNA Nph Ql NAA+probe
  94760-6 | SARS-CoV-2 N gene Nph Ql NAA+probe
  94761-4 | SARS-CoV-2 IgG DBS Ql IA
  94762-2 | SARS-CoV-2 Ab SerPl Ql IA
  94763-0 | SARS-CoV-2 Spec Ql Cult
  94765-5 | SARS-rel CoV E gene SerPl Ql NAA+probe
  94766-3 | SARS-CoV-2 N gene SerPl Ql NAA+probe
  94767-1 | SARS-CoV-2 S gene SerPl Ql NAA+probe
  94768-9 | SARS-CoV-2 IgA SerPlBld Ql IA.rapid
  94822-4 | SARS-CoV-2 RNA Sal Ql Seq
  94845-5 | SARS-CoV-2 RNA Sal Ql NAA+probe
  95125-1 | SARS-CoV-2 IgA+IgM SerPl Ql IA
  95209-3 | SARS-CoV+SARS-CoV-2 Ag Resp Ql IA.rapid
  95406-5 | SARS-CoV-2 RNA Nose Ql NAA+probe
  95409-9 | SARS-CoV-2 N gene Nose Ql NAA+probe
  95411-5 | SARS-CoV-2 NAb Ser Ql pVNT
  95416-4 | SARS-CoV-2 IgM DBS Ql IA
  95423-0 | FLUABV + SARS-CoV-2 Resp NAA+probe
  95424-8 | SARS-CoV-2 RNA Resp Ql Seq
  95425-5 | SARS-CoV-2 N gene Sal Ql NAA+probe
  95542-7 | SARS-CoV-2 Ab SerPlBld Ql IA.rapid
  95608-6 | SARS-CoV-2 RNA Resp Ql NAA+non-probe
  95609-4 | SARS-CoV-2 S gene Resp Ql Seq
  95823-1 | SARS-rel CoV E gene Sal Ql NAA+probe
  95824-9 | SARS-CoV-2 ORF1ab Sal Ql NAA+probe
  95825-6 | SARS-CoV-2 Ab DBS Ql IA
  95970-0 | SARS-CoV-2 TCRB Bld Ql Seq
  95971-8 | SARS-CoV-2 IFN-g Bld Ql
  96091-4 | SARS-CoV-2 RdRp Sal Ql NAA+probe
  96119-3 | SARS-CoV-2 Ag Upper resp Ql IA
  96120-1 | SARS-CoV-2 RdRp Lower resp Ql NAA+probe
  96121-9 | SARS-rel CoV E gene Low resp Ql NAA+prb
  96122-7 | SARS-rel CoV E gene Upper resp Ql NAA+prb
  96123-5 | SARS-CoV-2 RdRp Upper resp Ql NAA+probe
  96448-6 | SARS-CoV-2 N gene Sal Ql NAA N1
  96603-6 | SARS-CoV-2 S RBD NAb SerPl Ql sVNT
  96752-1 | SARS-CoV-2 S gene mut Spec Ql
  96763-8 | SARS-CoV-2 E gene Resp Ql NAA+probe
  96765-3 | SARS-CoV-2 S gene Sal Ql NAA+probe
  96797-6 | SARS-CoV-2 RNA OPA wash Ql NAA+probe
  96829-7 | SARS-CoV-2 RNA Spec Donr Ql NAA+probe
  96957-6 | SARS-CoV-2 M gene Upper resp Ql NAA+prb
  96958-4 | SARS-CoV-2 N gene Sal Ql NAA N2
  96986-5 | SARS-CoV-2 N gene Nose Ql NAA+non-probe
  97097-0 | SARS-CoV-2 Ag Upper resp Ql IA.rapid
  97098-8 | SARS-CoV-2 Nsp2 Upper resp Ql NAA+probe
  98069-8 | SARS-CoV-2 Ab Sal Ql IA.rapid
  98131-6 | SARS-CoV-2 ORF1b Resp Ql NAA+probe
  98132-4 | SARS-CoV-2 ORF1a Resp Ql NAA+probe
  98493-0 | SARS-CoV-2 ORF1b Sal Ql NAA+probe
  98494-8 | SARS-CoV-2 ORF1a Sal Ql NAA+probe
  99596-9 | SARS-CoV-2 N IgG SerPl Ql IA
  99597-7 | SARS-CoV-2 S IgG SerPl Ql IA
  99772-6 | SARS-CoV-2 IFN-g Bld-Imp

### Expansion

Expansion from tx.fhir.org based on Loinc v2.81

This value set contains 83 concepts

Code | System | Display
94307-6 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1
94308-4 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2
94309-2 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection
94310-0 | http://loinc.org | SARS-related coronavirus N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N3
94314-2 | http://loinc.org | SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection
94315-9 | http://loinc.org | SARS-related coronavirus E gene [Presence] in Specimen by NAA with probe detection
94316-7 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection
94500-6 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
94502-2 | http://loinc.org | SARS-related coronavirus RNA [Presence] in Respiratory system specimen by NAA with probe detection
94507-1 | http://loinc.org | SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay
94508-9 | http://loinc.org | SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay
94532-9 | http://loinc.org | SARS-related coronavirus+MERS coronavirus RNA [Presence] in Respiratory system specimen by NAA with probe detection
94533-7 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by NAA with probe detection
94534-5 | http://loinc.org | SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory system specimen by NAA with probe detection
94547-7 | http://loinc.org | SARS-CoV-2 (COVID-19) IgG+IgM Ab [Presence] in Serum or Plasma by Immunoassay
94558-4 | http://loinc.org | SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory system specimen by Rapid immunoassay
94559-2 | http://loinc.org | SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection
94562-6 | http://loinc.org | SARS-CoV-2 (COVID-19) IgA Ab [Presence] in Serum or Plasma by Immunoassay
94563-4 | http://loinc.org | SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum or Plasma by Immunoassay
94564-2 | http://loinc.org | SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum or Plasma by Immunoassay
94565-9 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with non-probe detection
94639-2 | http://loinc.org | SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Specimen by NAA with probe detection
94640-0 | http://loinc.org | SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by NAA with probe detection
94641-8 | http://loinc.org | SARS-CoV-2 (COVID-19) S gene [Presence] in Specimen by NAA with probe detection
94647-5 | http://loinc.org | SARS-related coronavirus RNA [Presence] in Specimen by NAA with probe detection
94660-8 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Serum or Plasma by NAA with probe detection
94756-4 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N1
94757-2 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by Nucleic acid amplification using CDC primer-probe set N2
94758-0 | http://loinc.org | SARS-related coronavirus E gene [Presence] in Respiratory system specimen by NAA with probe detection
94759-8 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection
94760-6 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Nasopharynx by NAA with probe detection
94761-4 | http://loinc.org | SARS-CoV-2 (COVID-19) IgG Ab [Presence] in DBS by Immunoassay
94762-2 | http://loinc.org | SARS-CoV-2 (COVID-19) Ab [Presence] in Serum or Plasma by Immunoassay
94763-0 | http://loinc.org | SARS-CoV-2 (COVID-19) [Presence] in Specimen by Organism specific culture
94765-5 | http://loinc.org | SARS-related coronavirus E gene [Presence] in Serum or Plasma by NAA with probe detection
94766-3 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Serum or Plasma by NAA with probe detection
94767-1 | http://loinc.org | SARS-CoV-2 (COVID-19) S gene [Presence] in Serum or Plasma by NAA with probe detection
94768-9 | http://loinc.org | SARS-CoV-2 (COVID-19) IgA Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay
94822-4 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by Sequencing
94845-5 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by NAA with probe detection
95125-1 | http://loinc.org | SARS-CoV-2 (COVID-19) IgA+IgM [Presence] in Serum or Plasma by Immunoassay
95209-3 | http://loinc.org | SARS-CoV+SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory system specimen by Rapid immunoassay
95406-5 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Nose by NAA with probe detection
95409-9 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with probe detection
95411-5 | http://loinc.org | SARS-CoV-2 (COVID-19) neutralizing antibody [Presence] in Serum by pVNT
95416-4 | http://loinc.org | SARS-CoV-2 (COVID-19) IgM Ab [Presence] in DBS by Immunoassay
95423-0 | http://loinc.org | Influenza virus A and B and SARS-CoV-2 (COVID-19) identified in Respiratory system specimen by NAA with probe detection
95424-8 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by Sequencing
95425-5 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by NAA with probe detection
95542-7 | http://loinc.org | SARS-CoV-2 (COVID-19) Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay
95608-6 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with non-probe detection
95609-4 | http://loinc.org | SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by Sequencing
95823-1 | http://loinc.org | SARS-related coronavirus E gene [Presence] in Saliva (oral fluid) by NAA with probe detection
95824-9 | http://loinc.org | SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Saliva (oral fluid) by NAA with probe detection
95825-6 | http://loinc.org | SARS-CoV-2 (COVID-19) Ab [Presence] in DBS by Immunoassay
95970-0 | http://loinc.org | SARS-CoV-2 (COVID-19) specific TCRB gene rearrangements [Presence] in Blood by Sequencing
95971-8 | http://loinc.org | SARS-CoV-2 stimulated gamma interferon [Presence] in Blood
96091-4 | http://loinc.org | SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Saliva (oral fluid) by NAA with probe detection
96119-3 | http://loinc.org | SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay
96120-1 | http://loinc.org | SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Lower respiratory specimen by NAA with probe detection
96121-9 | http://loinc.org | SARS-related coronavirus E gene [Presence] in Lower respiratory specimen by NAA with probe detection
96122-7 | http://loinc.org | SARS-related coronavirus E gene [Presence] in Upper respiratory specimen by NAA with probe detection
96123-5 | http://loinc.org | SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Upper respiratory specimen by NAA with probe detection
96448-6 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N1
96603-6 | http://loinc.org | SARS-CoV-2 (COVID-19) S protein RBD neutralizing antibody [Presence] in Serum or Plasma by sVNT
96752-1 | http://loinc.org | SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method
96763-8 | http://loinc.org | SARS-CoV-2 (COVID-19) E gene [Presence] in Respiratory system specimen by NAA with probe detection
96765-3 | http://loinc.org | SARS-CoV-2 (COVID-19) S gene [Presence] in Saliva (oral fluid) by NAA with probe detection
96797-6 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection
96829-7 | http://loinc.org | SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen from Donor by NAA with probe detection
96957-6 | http://loinc.org | SARS-CoV-2 (COVID-19) M gene [Presence] in Upper respiratory specimen by NAA with probe detection
96958-4 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N2
96986-5 | http://loinc.org | SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with non-probe detection
97097-0 | http://loinc.org | SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay
97098-8 | http://loinc.org | SARS-CoV-2 (COVID-19) Nsp2 gene [Presence] in Upper respiratory specimen by NAA with probe detection
98069-8 | http://loinc.org | SARS-CoV-2 (COVID-19) Ab [Presence] in Saliva (oral fluid) by Rapid immunoassay
98131-6 | http://loinc.org | SARS-CoV-2 (COVID-19) ORF1b region [Presence] in Respiratory system specimen by NAA with probe detection
98132-4 | http://loinc.org | SARS-CoV-2 (COVID-19) ORF1a region [Presence] in Respiratory system specimen by NAA with probe detection
98493-0 | http://loinc.org | SARS-CoV-2 (COVID-19) ORF1b region [Presence] in Saliva (oral fluid) by NAA with probe detection
98494-8 | http://loinc.org | SARS-CoV-2 (COVID-19) ORF1a region [Presence] in Saliva (oral fluid) by NAA with probe detection
99596-9 | http://loinc.org | SARS-CoV-2 (COVID-19) N protein IgG Ab [Presence] in Serum or Plasma by Immunoassay
99597-7 | http://loinc.org | SARS-CoV-2 (COVID-19) S protein IgG Ab [Presence] in Serum or Plasma by Immunoassay
99772-6 | http://loinc.org | SARS-CoV-2 stimulated gamma interferon [Interpretation] in Blood Qualitative

Explanation of the columns that may appear on this page:

Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System | The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code | The code (used as the code in the resource instance)
Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition | An explanation of the meaning of the concept
Comments | Additional notes about how to use the code