{ "resourceType" : "StructureMap", "id" : "ConditionMapV4", "language" : "en", "text" : { "status" : "generated", "div" : "

Generated Narrative: StructureMap ConditionMapV4

\r\n/// url = 'http://hl7.org/fhir/uv/omop/StructureMap/ConditionMapV4'\r\n/// version = '2.0.0-ballot'\r\n/// name = 'ConditionMapV4'\r\n/// title = 'Mapping Condition resource to Condition Occurrence OMOP Domain V4'\r\n/// status = 'active'\r\n/// description = 'This mapping maps FHIR Condition instances to OMOP Condition Occurence Table objects.'\r\n\r\nuses "http://hl7.org/fhir/StructureDefinition/Condition|4.0.1" alias Condition as source\r\nuses "http://hl7.org/fhir/uv/omop/StructureDefinition/ConditionOccurrence" alias ConOccTable as target\r\n\r\ngroup ConditionOccurrence(source src : Condition, target tgt : ConOccTable) {\r\n  src where (src.onset.empty().not() | src.recordedDate.empty().not()) then {\r\n    // OMOP Condition ID would be a map from FHIR ID to an external key\r\n    src as s -> tgt then {\r\n      s.identifier as i -> tgt then {\r\n        i.value as id -> tgt.condition_occurrence_id = cast(id, 'integer');\r\n      } "conditionIdFromIdentifier";\r\n    } "conditionId";\r\n    // OMOP Person ID would be a map from the FHIR Condition subject reference to an external key\r\n    src.subject as subject -> tgt then {\r\n      subject.reference as s -> tgt.person_id = (%s.substring(%s.indexOf('/') + 1));\r\n    };\r\n    src.code as s -> tgt then {\r\n      s.coding as sc -> tgt then {\r\n        sc.code as a -> tgt.condition_concept_id = translate(a, 'http://hl7.org/fhir/uv/omop/ConceptMap/ConditionConcepts', 'code');\r\n        sc.display as d -> tgt.condition_source_value = cast(d, 'string');\r\n      };\r\n    };\r\n    src.onset : dateTime as osd ->  tgt.condition_start_datetime = cast(osd, 'dateTime'),  tgt.condition_start_date = cast(osd, 'date');\r\n    src.abatement : dateTime as abdt ->  tgt.condition_end_datetime = cast(abdt, 'dateTime'),  tgt.condition_end_date = cast(abdt, 'date');\r\n    src.recordedDate as rd ->  tgt.condition_start_datetime = cast(rd, 'dateTime'),  tgt.condition_start_date = cast(rd, 'date');\r\n    src.clinicalStatus as s -> tgt then {\r\n      s.coding as sc -> tgt then {\r\n        sc.code as a ->  tgt.condition_status_concept_id = translate(a, 'http://hl7.org/fhir/uv/omop/ConceptMap/ConditionStatusConcepts', 'code'),  tgt.condition_status_source_value = cast(a, 'string');\r\n      };\r\n    };\r\n    src.encounter as encounter -> tgt then {\r\n      encounter.reference as e -> tgt.visit_occurrence_id = (%e.substring(%e.indexOf('/') + 1));\r\n    };\r\n    src.category -> tgt.condition_type_concept_id = 32817 "default";\r\n  } "conditionMapping";\r\n}\r\n\r\n
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"mode" : "source" }, { "name" : "tgt", "type" : "ConOccTable", "mode" : "target" }], "rule" : [{ "name" : "conditionMapping", "source" : [{ "context" : "src", "condition" : "src.onset.empty().not() | src.recordedDate.empty().not()" }], "rule" : [{ "name" : "conditionId", "source" : [{ "context" : "src", "variable" : "s" }], "target" : [{ "context" : "tgt" }], "rule" : [{ "name" : "conditionIdFromIdentifier", "source" : [{ "context" : "s", "element" : "identifier", "variable" : "i" }], "target" : [{ "context" : "tgt" }], "rule" : [{ "name" : "value", "source" : [{ "context" : "i", "element" : "value", "variable" : "id" }], "target" : [{ "context" : "tgt", "element" : "condition_occurrence_id", "transform" : "cast", "parameter" : [{ "valueId" : "id" }, { "valueString" : "integer" }] }] }] }], "documentation" : "OMOP Condition ID would be a map from FHIR ID to an external key" }, { "name" : "subject", "source" : [{ "context" : "src", "element" : "subject", "variable" : "subject" }], "target" : [{ "context" : "tgt" }], "rule" : [{ "name" : "reference", "source" : [{ "context" : "subject", "element" : "reference", "variable" : "s" }], "target" : [{ "context" : "tgt", "element" : "person_id", "transform" : "evaluate", "parameter" : [{ "valueString" : "%s.substring(%s.indexOf('/') + 1)" }] }] }], "documentation" : "OMOP Person ID would be a map from the FHIR Condition subject reference to an external key" }, { "name" : "code", "source" : [{ "context" : "src", "element" : "code", "variable" : "s" }], "target" : [{ "context" : "tgt" }], "rule" : [{ "name" : "coding", "source" : [{ "context" : "s", "element" : "coding", "variable" : "sc" }], "target" : [{ "context" : "tgt" }], "rule" : [{ "name" : "code", "source" : [{ "context" : "sc", "element" : "code", "variable" : "a" }], "target" : [{ "context" : "tgt", "element" : "condition_concept_id", "transform" : "translate", "parameter" : [{ "valueId" : "a" }, { "valueString" : 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"condition_end_datetime", "transform" : "cast", "parameter" : [{ "valueId" : "abdt" }, { "valueString" : "dateTime" }] }, { "context" : "tgt", "element" : "condition_end_date", "transform" : "cast", "parameter" : [{ "valueId" : "abdt" }, { "valueString" : "date" }] }] }, { "name" : "recordedDate", "source" : [{ "context" : "src", "element" : "recordedDate", "variable" : "rd" }], "target" : [{ "context" : "tgt", "element" : "condition_start_datetime", "transform" : "cast", "parameter" : [{ "valueId" : "rd" }, { "valueString" : "dateTime" }] }, { "context" : "tgt", "element" : "condition_start_date", "transform" : "cast", "parameter" : [{ "valueId" : "rd" }, { "valueString" : "date" }] }] }, { "name" : "clinicalStatus", "source" : [{ "context" : "src", "element" : "clinicalStatus", "variable" : "s" }], "target" : [{ "context" : "tgt" }], "rule" : [{ "name" : "coding", "source" : [{ "context" : "s", "element" : "coding", "variable" : "sc" }], "target" : [{ "context" : "tgt" }], "rule" : [{ "name" : "code", "source" : [{ "context" : "sc", "element" : "code", "variable" : "a" }], "target" : [{ "context" : "tgt", "element" : "condition_status_concept_id", "transform" : "translate", "parameter" : [{ "valueId" : "a" }, { "valueString" : "http://hl7.org/fhir/uv/omop/ConceptMap/ConditionStatusConcepts" }, { "valueString" : "code" }] }, { "context" : "tgt", "element" : "condition_status_source_value", "transform" : "cast", "parameter" : [{ "valueId" : "a" }, { "valueString" : "string" }] }] }] }] }, { "name" : "encounter", "source" : [{ "context" : "src", "element" : "encounter", "variable" : "encounter" }], "target" : [{ "context" : "tgt" }], "rule" : [{ "name" : "reference", "source" : [{ "context" : "encounter", "element" : "reference", "variable" : "e" }], "target" : [{ "context" : "tgt", "element" : "visit_occurrence_id", "transform" : "evaluate", "parameter" : [{ "valueString" : "%e.substring(%e.indexOf('/') + 1)" }] }] }] }, { "name" : "default", "source" : [{ "context" : "src", "element" : "category" }], "target" : [{ "context" : "tgt", "element" : "condition_type_concept_id", "transform" : "copy", "parameter" : [{ "valueInteger" : 32817 }] }] }] }] }] }