@prefix fhir: . @prefix owl: . @prefix rdf: . @prefix rdfs: . @prefix xsd: . # - resource ------------------------------------------------------------------- a fhir:StructureMap ; fhir:nodeRole fhir:treeRoot ; fhir:id [ fhir:v "AllergyMap"] ; # fhir:language [ fhir:v "en"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div [ fhir:v "

Generated Narrative: StructureMap AllergyMap

Language: en

#xD;\n/// url = 'http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap'#xD;\n/// name = 'AllergyMap'#xD;\n/// title = 'Mapping Allergy resource to Observation OMOP Domain'#xD;\n/// status = 'draft'#xD;\n#xD;\nuses \"http://hl7.org/fhir/StructureDefinition/AllergyIntolerance\" alias Allergy as source#xD;\nuses \"http://hl7.org/fhir/uv/omop/StructureDefinition/Observation\" alias ObservationTable as target#xD;\n#xD;\ngroup Observation(source src : Allergy, target tgt : ObservationTable) {#xD;\n  src.id -> tgt.observation_id = '1'; // OMOP Observation ID would be a map from FHIR ID to an external key#xD;\n  src.patient -> tgt.person_id = '1'; // OMOP Person ID would be a map from the FHIR Allergy Patient reference to an external key#xD;\n  src.encounter -> tgt.visit_occurrence_id = '1'; // OMOP Visit Occurrence ID would be a map from the FHIR Allergy Encounter reference to an external key#xD;\n  src.type as s -> tgt then {#xD;\n    s.coding as sc -> tgt then {#xD;\n      sc.code as code where (code = 'allergy') then {#xD;\n        src.category as category -> tgt.observation_concept_id = translate(category, 'http://hl7.org/fhir/uv/omop/ConceptMap/AllergyType', 'code');#xD;\n      };#xD;\n      src.code as code where (code = 'intolerance') then {#xD;\n        src.category as category -> tgt.observation_concept_id = translate(category, 'http://hl7.org/fhir/uv/omop/ConceptMap/IntoleranceType', 'code');#xD;\n      };#xD;\n    };#xD;\n  };#xD;\n  src.code as s -> tgt then {#xD;\n    s.coding as sc -> tgt then {#xD;\n      sc.code as code ->  tgt.value_as_concept_id = translate(code, 'http://hl7.org/fhir/uv/omop/ConceptMap/AllergySubstanceType', 'code'),  tgt.value_source_value = code;#xD;\n    };#xD;\n  };#xD;\n  src.recordedDate : dateTime as osd ->  tgt.observation_date = (src.recordedDate.toString().substring(0, 10)),  tgt.observation_datetime = osd;#xD;\n}#xD;\n#xD;\n

"^^rdf:XMLLiteral ] ] ; # fhir:extension ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ; fhir:l ] ; fhir:value [ a fhir:Code ; fhir:v "brr" ] ] [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ; fhir:l ] ; fhir:value [ a fhir:Integer ; fhir:v 1 ; fhir:extension ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ; fhir:l ] ; fhir:value [ a fhir:Canonical ; fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ; fhir:l ] ] ) ] ] [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"^^xsd:anyURI ; fhir:l ] ; fhir:value [ a fhir:Code ; fhir:v "informative" ; fhir:extension ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ; fhir:l ] ; fhir:value [ a fhir:Canonical ; fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ; fhir:l ] ] ) ] ] ) ; # fhir:url [ fhir:v "http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap"^^xsd:anyURI ; fhir:l ] ; # fhir:version [ fhir:v "1.0.0"] ; # fhir:name [ fhir:v "AllergyMap"] ; # fhir:title [ fhir:v "Mapping Allergy resource to Observation OMOP Domain"] ; # fhir:status [ fhir:v "draft"] ; # fhir:date [ fhir:v "2026-04-02T22:51:15+00:00"^^xsd:dateTime] ; # fhir:publisher [ fhir:v "HL7 International / Biomedical Research and Regulation"] ; # fhir:contact ( [ fhir:name [ fhir:v "HL7 International / Biomedical Research and Regulation" ] ; fhir:telecom ( [ fhir:system [ fhir:v "url" ] ; fhir:value [ fhir:v "http://www.hl7.org/Special/committees/rcrim" ] ] ) ] ) ; # fhir:description [ fhir:v "This mapping maps FHIR AllergyIntolerance instances to OMOP Observation Table objects."] ; # fhir:jurisdiction ( [ fhir:coding ( [ fhir:system [ fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "001" ] ; fhir:display [ fhir:v "World" ] ] ) ] ) ; # fhir:structure ( [ fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/AllergyIntolerance"^^xsd:anyURI ; fhir:l ] ; fhir:mode [ fhir:v "source" ] ; fhir:alias [ fhir:v "Allergy" ] ] [ fhir:url [ fhir:v "http://hl7.org/fhir/uv/omop/StructureDefinition/Observation"^^xsd:anyURI ; fhir:l ] ; fhir:mode [ fhir:v "target" ] ; fhir:alias [ fhir:v "ObservationTable" ] ] ) ; # fhir:group ( [ fhir:name [ fhir:v "Observation" ] ; fhir:input ( [ fhir:name [ fhir:v "src" ] ; fhir:type [ fhir:v "Allergy" ] ; fhir:mode [ fhir:v "source" ] ] [ fhir:name [ fhir:v "tgt" ] ; fhir:type [ fhir:v "ObservationTable" ] ; fhir:mode [ fhir:v "target" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "id" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "id" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_id" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "1" ] ] ) ] ) ; fhir:documentation [ fhir:v "OMOP Observation ID would be a map from FHIR ID to an external key" ] ] [ fhir:name [ fhir:v "patient" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "patient" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "person_id" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "1" ] ] ) ] ) ; fhir:documentation [ fhir:v "OMOP Person ID would be a map from the FHIR Allergy Patient reference to an external key" ] ] [ fhir:name [ fhir:v "encounter" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "encounter" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "visit_occurrence_id" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "1" ] ] ) ] ) ; fhir:documentation [ fhir:v "OMOP Visit Occurrence ID would be a map from the FHIR Allergy Encounter reference to an external key" ] ] [ fhir:name [ fhir:v "type" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "type" ] ; fhir:variable [ fhir:v "s" ] ] ) ; fhir:target ( [ fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "tgt" ] ] ) ] ) ; fhir:rule ( [ fhir:name [ fhir:v "coding" ] ; fhir:source ( [ fhir:context [ fhir:v "s" ] ; fhir:element [ fhir:v "coding" ] ; fhir:variable [ fhir:v "sc" ] ] ) ; fhir:target ( [ fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "tgt" ] ] ) ] ) ; fhir:rule ( [ fhir:name [ fhir:v "code" ] ; fhir:source ( [ fhir:context [ fhir:v "sc" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "code" ] ; fhir:condition [ fhir:v "(code = 'allergy')" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "category" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "category" ] ; fhir:variable [ fhir:v "category" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_concept_id" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "category" ] ] [ fhir:value [ a fhir:String ; fhir:v "http://hl7.org/fhir/uv/omop/ConceptMap/AllergyType" ] ] [ fhir:value [ a fhir:String ; fhir:v "code" ] ] ) ] ) ] ) ] [ fhir:name [ fhir:v "code" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "code" ] ; fhir:condition [ fhir:v "(code = 'intolerance')" ] ] ) ; fhir:rule ( [ fhir:name [ fhir:v "category" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "category" ] ; fhir:variable [ fhir:v "category" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_concept_id" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "category" ] ] [ fhir:value [ a fhir:String ; fhir:v "http://hl7.org/fhir/uv/omop/ConceptMap/IntoleranceType" ] ] [ fhir:value [ a fhir:String ; fhir:v "code" ] ] ) ] ) ] ) ] ) ] ) ] [ fhir:name [ fhir:v "code" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "s" ] ] ) ; fhir:target ( [ fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "tgt" ] ] ) ] ) ; fhir:rule ( [ fhir:name [ fhir:v "coding" ] ; fhir:source ( [ fhir:context [ fhir:v "s" ] ; fhir:element [ fhir:v "coding" ] ; fhir:variable [ fhir:v "sc" ] ] ) ; fhir:target ( [ fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "tgt" ] ] ) ] ) ; fhir:rule ( [ fhir:name [ fhir:v "code" ] ; fhir:source ( [ fhir:context [ fhir:v "sc" ] ; fhir:element [ fhir:v "code" ] ; fhir:variable [ fhir:v "code" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "value_as_concept_id" ] ; fhir:transform [ fhir:v "translate" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "code" ] ] [ fhir:value [ a fhir:String ; fhir:v "http://hl7.org/fhir/uv/omop/ConceptMap/AllergySubstanceType" ] ] [ fhir:value [ a fhir:String ; fhir:v "code" ] ] ) ] [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "value_source_value" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "code" ] ] ) ] ) ] ) ] ) ] [ fhir:name [ fhir:v "recordedDateDateTime" ] ; fhir:source ( [ fhir:context [ fhir:v "src" ] ; fhir:type [ fhir:v "dateTime" ] ; fhir:element [ fhir:v "recordedDate" ] ; fhir:variable [ fhir:v "osd" ] ] ) ; fhir:target ( [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_date" ] ; fhir:transform [ fhir:v "evaluate" ] ; fhir:parameter ( [ fhir:value [ a fhir:String ; fhir:v "src.recordedDate.toString().substring(0, 10)" ] ] ) ] [ fhir:context [ fhir:v "tgt" ] ; fhir:element [ fhir:v "observation_datetime" ] ; fhir:transform [ fhir:v "copy" ] ; fhir:parameter ( [ fhir:value [ a fhir:Id ; fhir:v "osd" ] ] ) ] ) ] ) ] ) . # # -------------------------------------------------------------------------------------