{ "resourceType" : "StructureMap", "id" : "AllergyMap", "language" : "en", "text" : { "status" : "generated", "div" : "

Generated Narrative: StructureMap AllergyMap

Language: en

\r\n/// url = 'http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap'\r\n/// name = 'AllergyMap'\r\n/// title = 'Mapping Allergy resource to Observation OMOP Domain'\r\n/// status = 'draft'\r\n\r\nuses "http://hl7.org/fhir/StructureDefinition/AllergyIntolerance" alias Allergy as source\r\nuses "http://hl7.org/fhir/uv/omop/StructureDefinition/Observation" alias ObservationTable as target\r\n\r\ngroup Observation(source src : Allergy, target tgt : ObservationTable) {\r\n  src.id -> tgt.observation_id = '1'; // OMOP Observation ID would be a map from FHIR ID to an external key\r\n  src.patient -> tgt.person_id = '1'; // OMOP Person ID would be a map from the FHIR Allergy Patient reference to an external key\r\n  src.encounter -> tgt.visit_occurrence_id = '1'; // OMOP Visit Occurrence ID would be a map from the FHIR Allergy Encounter reference to an external key\r\n  src.type as s -> tgt then {\r\n    s.coding as sc -> tgt then {\r\n      sc.code as code where (code = 'allergy') then {\r\n        src.category as category -> tgt.observation_concept_id = translate(category, 'http://hl7.org/fhir/uv/omop/ConceptMap/AllergyType', 'code');\r\n      };\r\n      src.code as code where (code = 'intolerance') then {\r\n        src.category as category -> tgt.observation_concept_id = translate(category, 'http://hl7.org/fhir/uv/omop/ConceptMap/IntoleranceType', 'code');\r\n      };\r\n    };\r\n  };\r\n  src.code as s -> tgt then {\r\n    s.coding as sc -> tgt then {\r\n      sc.code as code ->  tgt.value_as_concept_id = translate(code, 'http://hl7.org/fhir/uv/omop/ConceptMap/AllergySubstanceType', 'code'),  tgt.value_source_value = code;\r\n    };\r\n  };\r\n  src.recordedDate : dateTime as osd ->  tgt.observation_date = (src.recordedDate.toString().substring(0, 10)),  tgt.observation_datetime = osd;\r\n}\r\n\r\n
" }, "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg", "valueCode" : "brr" }, { "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm", "valueInteger" : 1, "_valueInteger" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom", "valueCanonical" : "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop" }] } }, { "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status", "valueCode" : "informative", "_valueCode" : { "extension" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom", "valueCanonical" : "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop" }] } }], "url" : "http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap", "version" : "1.0.0", "name" : "AllergyMap", "title" : "Mapping Allergy resource to Observation OMOP Domain", "status" : "draft", "date" : "2026-04-02T22:51:15+00:00", "publisher" : "HL7 International / Biomedical Research and Regulation", "contact" : [{ "name" : "HL7 International / Biomedical Research and Regulation", "telecom" : [{ "system" : "url", "value" : "http://www.hl7.org/Special/committees/rcrim" }] }], "description" : "This mapping maps FHIR AllergyIntolerance instances to OMOP Observation Table objects.", "jurisdiction" : [{ "coding" : [{ "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm", "code" : "001", "display" : "World" }] }], "structure" : [{ "url" : "http://hl7.org/fhir/StructureDefinition/AllergyIntolerance", "mode" : "source", "alias" : "Allergy" }, { "url" : "http://hl7.org/fhir/uv/omop/StructureDefinition/Observation", "mode" : "target", "alias" : "ObservationTable" }], "group" : [{ "name" : "Observation", "input" : [{ "name" : "src", "type" : "Allergy", "mode" : "source" }, { "name" : "tgt", "type" : "ObservationTable", "mode" : "target" }], "rule" : [{ "name" : "id", "source" : [{ "context" : "src", "element" : "id" }], "target" : [{ "context" : "tgt", "element" : "observation_id", "transform" : "copy", "parameter" : [{ "valueString" : "1" }] }], "documentation" : "OMOP Observation ID would be a map from FHIR ID to an external key" }, { "name" : "patient", "source" : [{ "context" : "src", "element" : "patient" }], "target" : [{ "context" : "tgt", "element" : "person_id", "transform" : "copy", "parameter" : [{ "valueString" : "1" }] }], "documentation" : "OMOP Person ID would be a map from the FHIR Allergy Patient reference to an external key" }, { "name" : "encounter", "source" : [{ "context" : "src", "element" : "encounter" }], "target" : [{ "context" : "tgt", "element" : "visit_occurrence_id", "transform" : "copy", "parameter" : [{ "valueString" : "1" }] }], "documentation" : "OMOP Visit Occurrence ID would be a map from the FHIR Allergy Encounter reference to an external key" }, { "name" : "type", "source" : [{ "context" : "src", "element" : "type", "variable" : "s" }], "target" : [{ "transform" : "copy", "parameter" : [{ "valueId" : "tgt" }] }], "rule" : [{ "name" : "coding", "source" : [{ "context" : "s", "element" : "coding", "variable" : "sc" }], "target" : [{ "transform" : "copy", "parameter" : [{ "valueId" : "tgt" }] }], "rule" : [{ "name" : "code", "source" : [{ "context" : "sc", "element" : "code", "variable" : "code", "condition" : "(code = 'allergy')" }], "rule" : [{ "name" : "category", "source" : [{ "context" : "src", "element" : "category", "variable" : "category" }], "target" : [{ "context" : "tgt", "element" : "observation_concept_id", "transform" : "translate", "parameter" : [{ "valueId" : "category" }, { "valueString" : "http://hl7.org/fhir/uv/omop/ConceptMap/AllergyType" }, { "valueString" : "code" }] }] }] }, { "name" : "code", "source" : [{ "context" : "src", "element" : "code", "variable" : "code", "condition" : "(code = 'intolerance')" }], "rule" : [{ "name" : "category", "source" : [{ "context" : "src", "element" : "category", "variable" : "category" }], "target" : [{ "context" : "tgt", "element" : "observation_concept_id", "transform" : "translate", "parameter" : [{ "valueId" : "category" }, { "valueString" : "http://hl7.org/fhir/uv/omop/ConceptMap/IntoleranceType" }, { "valueString" : "code" }] }] }] }] }] }, { "name" : "code", "source" : [{ "context" : "src", "element" : "code", "variable" : "s" }], "target" : [{ "transform" : "copy", "parameter" : [{ "valueId" : "tgt" }] }], "rule" : [{ "name" : "coding", "source" : [{ "context" : "s", "element" : "coding", "variable" : "sc" }], "target" : [{ "transform" : "copy", "parameter" : [{ "valueId" : "tgt" }] }], "rule" : [{ "name" : "code", "source" : [{ "context" : "sc", "element" : "code", "variable" : "code" }], "target" : [{ "context" : "tgt", "element" : "value_as_concept_id", "transform" : "translate", "parameter" : [{ "valueId" : "code" }, { "valueString" : "http://hl7.org/fhir/uv/omop/ConceptMap/AllergySubstanceType" }, { "valueString" : "code" }] }, { "context" : "tgt", "element" : "value_source_value", "transform" : "copy", "parameter" : [{ "valueId" : "code" }] }] }] }] }, { "name" : "recordedDateDateTime", "source" : [{ "context" : "src", "type" : "dateTime", "element" : "recordedDate", "variable" : "osd" }], "target" : [{ "context" : "tgt", "element" : "observation_date", "transform" : "evaluate", "parameter" : [{ "valueString" : "src.recordedDate.toString().substring(0, 10)" }] }, { "context" : "tgt", "element" : "observation_datetime", "transform" : "copy", "parameter" : [{ "valueId" : "osd" }] }] }] }] }