FHIR to OMOP FHIR IG
1.0.0-ballot - INFORMATIVE 1 - Ballot
FHIR to OMOP FHIR IG
1.0.0-ballot - INFORMATIVE 1 - Ballot
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Informative | Maturity Level: 1 |
{
"resourceType" : "StructureMap",
"id" : "AllergyMap",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap AllergyMap</b></p><a name=\"AllergyMap\"> </a><a name=\"hcAllergyMap\"> </a><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'AllergyMap'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Allergy resource to Observation OMOP Domain'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'draft'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R5/allergyintolerance.html\" title=\"AllergyIntolerance\">http://hl7.org/fhir/StructureDefinition/AllergyIntolerance</a><span style=\"color: navy\">" </span><b>alias </b>Allergy <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-Observation.html\" title=\"Observation OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/Observation</a><span style=\"color: navy\">" </span><b>alias </b>ObservationTable <b>as </b><b>target</b>\r\n\r\n<b>group </b>Observation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Allergy, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>ObservationTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src.code<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> sc.code<span style=\"color: navy\"><b> -> </b></span> tgt.observation_concept_id<span style=\"color: navy\">, </span> tgt.observation_source_value<span style=\"color: navy\">, </span> tgt.observation_source_concept_id<span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">src.id as id -> tgt.observation_id = cast(id, "integer");</span>\r\n src.onset<span style=\"color: navy\"> : </span>dateTime<b> as </b><span style=\"color: maroon\">osd</span><span style=\"color: navy\"><b> -> </b></span> tgt.observation_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">osd</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.observation_datetime = <span style=\"color: maroon\">osd</span><span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">src.patient as s -> tgt then {</span>\r\n src.reaction<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.manifestation<b> as </b><span style=\"color: maroon\">sman</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> sman.concept<b> as </b><span style=\"color: maroon\">smanc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> smanc.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> sc.code<span style=\"color: navy\"><b> -> </b></span> tgt.value_as_concept_id<span style=\"color: navy\">, </span> tgt.value_source_value<span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "brr"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger" : 1,
"_valueInteger" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
}
]
}
},
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"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode" : "informative",
"_valueCode" : {
"extension" : [
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"valueCanonical" : "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
}
]
}
}
],
"url" : "http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap",
"version" : "1.0.0-ballot",
"name" : "AllergyMap",
"title" : "Mapping Allergy resource to Observation OMOP Domain",
"status" : "draft",
"date" : "2025-07-29T17:40:15+00:00",
"publisher" : "HL7 International / Biomedical Research and Regulation",
"contact" : [
{
"name" : "HL7 International / Biomedical Research and Regulation",
"telecom" : [
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"system" : "url",
"value" : "http://www.hl7.org/Special/committees/rcrim"
}
]
}
],
"description" : "This mapping maps FHIR AllergyIntolerance instances to OMOP Observation Table objects.",
"jurisdiction" : [
{
"coding" : [
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"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"structure" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/AllergyIntolerance",
"mode" : "source",
"alias" : "Allergy"
},
{
"url" : "http://hl7.org/fhir/uv/omop/StructureDefinition/Observation",
"mode" : "target",
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}
],
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"name" : "src",
"type" : "Allergy",
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"element" : "observation_source_concept_id"
}
]
}
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],
"documentation" : "src.id as id -> tgt.observation_id = cast(id, \"integer\");"
},
{
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"type" : "dateTime",
"element" : "onset",
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}
],
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"element" : "observation_date",
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{
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}
]
},
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"transform" : "copy",
"parameter" : [
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],
"documentation" : "src.patient as s -> tgt then {"
},
{
"name" : "reaction",
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{
"context" : "src",
"element" : "reaction",
"variable" : "s"
}
],
"target" : [
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"parameter" : [
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]
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],
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],
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IG © 2023+ HL7 International / Biomedical Research and Regulation. Package hl7.fhir.uv.omop#1.0.0-ballot based on FHIR 5.0.0. Generated 2025-07-29
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