FHIR to OMOP FHIR IG
0.1.0 - ci-build International flag

FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions

Logical Model: Measurement OMOP Table

Official URL: http://hl7.org/fhir/uv/omop/StructureDefinition/Measurement Version: 0.1.0
Standards status: Draft Maturity Level: 1 Computable Name: Measurement

The MEASUREMENT table contains records of Measurements, i.e. structured values (numerical or categorical) obtained through systematic and standardized examination or testing of a Person or Person's sample. The MEASUREMENT table contains both orders and results of such Measurements as laboratory tests, vital signs, quantitative findings from pathology reports, etc. Measurements are stored as attribute value pairs, with the attribute as the Measurement Concept and the value representing the result. The value can be a Concept (stored in VALUE_AS_CONCEPT), or a numerical value (VALUE_AS_NUMBER) with a Unit (UNIT_CONCEPT_ID). The Procedure for obtaining the sample is housed in the PROCEDURE_OCCURRENCE table, though it is unnecessary to create a PROCEDURE_OCCURRENCE record for each measurement if one does not exist in the source data. Measurements differ from Observations in that they require a standardized test or some other activity to generate a quantitative or qualitative result. If there is no result, it is assumed that the lab test was conducted but the result was not captured.

Usage:

  • This Logical Model Profile is not used by any profiles in this Implementation Guide

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraintsdoco
.. Measurement 0..* Base Measurement OMOP Table
Instances of this logical model are not marked to be the target of a Reference
... measurement_id 1..1 code Measurement Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... measurement_concept_id 1..1 code Measurement
... measurement_datetime 0..1 dateTime Measurement Datetime
... measurement_time 0..1 string Measurement Time
... measurement_type_concept_id 1..1 code Measurement Type
... operator_concept_id 0..1 code Operator
... value_as_number 0..1 integer Value as Number
... value_as_concept_id 0..1 code Value as Concept
... unit_concept_id 0..1 code Unit
... range_low 0..1 integer Range Low
... range_high 0..1 integer Range High
... provider_id 0..1 Reference(Provider OMOP Table) Provider
... visit_occurrence_id 0..1 Reference(Visit Occurrence OMOP Table) Visit Occurence
... visit_detail_id 0..1 Reference(Visit Detail OMOP Table) Visit Detail
... measurement_source_value 0..1 string Measurement Source Value
... measurement_source_concept_id 0..1 code Measurement Source
... unit_source_value 0..1 string Unit Source Value
... unit_source_concept_id 0..1 code Unit Source
... value_source_value 0..1 string Value Source Value
... measurement_event_id 0..1 string Measurement Event
... meas_event_field_concept_id 0..1 code Measurement Event Field

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. Measurement 0..* Base Measurement OMOP Table
Instances of this logical model are not marked to be the target of a Reference
... measurement_id 1..1 code Measurement Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... measurement_concept_id 1..1 code Measurement
... measurement_datetime 0..1 dateTime Measurement Datetime
... measurement_time 0..1 string Measurement Time
... measurement_type_concept_id 1..1 code Measurement Type
... operator_concept_id 0..1 code Operator
... value_as_number 0..1 integer Value as Number
... value_as_concept_id 0..1 code Value as Concept
... unit_concept_id 0..1 code Unit
... range_low 0..1 integer Range Low
... range_high 0..1 integer Range High
... provider_id 0..1 Reference(Provider OMOP Table) Provider
... visit_occurrence_id 0..1 Reference(Visit Occurrence OMOP Table) Visit Occurence
... visit_detail_id 0..1 Reference(Visit Detail OMOP Table) Visit Detail
... measurement_source_value 0..1 string Measurement Source Value
... measurement_source_concept_id 0..1 code Measurement Source
... unit_source_value 0..1 string Unit Source Value
... unit_source_concept_id 0..1 code Unit Source
... value_source_value 0..1 string Value Source Value
... measurement_event_id 0..1 string Measurement Event
... meas_event_field_concept_id 0..1 code Measurement Event Field

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. Measurement 0..* Base Measurement OMOP Table
Instances of this logical model are not marked to be the target of a Reference
... measurement_id 1..1 code Measurement Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... measurement_concept_id 1..1 code Measurement
... measurement_datetime 0..1 dateTime Measurement Datetime
... measurement_time 0..1 string Measurement Time
... measurement_type_concept_id 1..1 code Measurement Type
... operator_concept_id 0..1 code Operator
... value_as_number 0..1 integer Value as Number
... value_as_concept_id 0..1 code Value as Concept
... unit_concept_id 0..1 code Unit
... range_low 0..1 integer Range Low
... range_high 0..1 integer Range High
... provider_id 0..1 Reference(Provider OMOP Table) Provider
... visit_occurrence_id 0..1 Reference(Visit Occurrence OMOP Table) Visit Occurence
... visit_detail_id 0..1 Reference(Visit Detail OMOP Table) Visit Detail
... measurement_source_value 0..1 string Measurement Source Value
... measurement_source_concept_id 0..1 code Measurement Source
... unit_source_value 0..1 string Unit Source Value
... unit_source_concept_id 0..1 code Unit Source
... value_source_value 0..1 string Value Source Value
... measurement_event_id 0..1 string Measurement Event
... meas_event_field_concept_id 0..1 code Measurement Event Field

doco Documentation for this format

Differential View

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraintsdoco
.. Measurement 0..* Base Measurement OMOP Table
Instances of this logical model are not marked to be the target of a Reference
... measurement_id 1..1 code Measurement Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... measurement_concept_id 1..1 code Measurement
... measurement_datetime 0..1 dateTime Measurement Datetime
... measurement_time 0..1 string Measurement Time
... measurement_type_concept_id 1..1 code Measurement Type
... operator_concept_id 0..1 code Operator
... value_as_number 0..1 integer Value as Number
... value_as_concept_id 0..1 code Value as Concept
... unit_concept_id 0..1 code Unit
... range_low 0..1 integer Range Low
... range_high 0..1 integer Range High
... provider_id 0..1 Reference(Provider OMOP Table) Provider
... visit_occurrence_id 0..1 Reference(Visit Occurrence OMOP Table) Visit Occurence
... visit_detail_id 0..1 Reference(Visit Detail OMOP Table) Visit Detail
... measurement_source_value 0..1 string Measurement Source Value
... measurement_source_concept_id 0..1 code Measurement Source
... unit_source_value 0..1 string Unit Source Value
... unit_source_concept_id 0..1 code Unit Source
... value_source_value 0..1 string Value Source Value
... measurement_event_id 0..1 string Measurement Event
... meas_event_field_concept_id 0..1 code Measurement Event Field

doco Documentation for this format

Key Elements View

NameFlagsCard.TypeDescription & Constraintsdoco
.. Measurement 0..* Base Measurement OMOP Table
Instances of this logical model are not marked to be the target of a Reference
... measurement_id 1..1 code Measurement Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... measurement_concept_id 1..1 code Measurement
... measurement_datetime 0..1 dateTime Measurement Datetime
... measurement_time 0..1 string Measurement Time
... measurement_type_concept_id 1..1 code Measurement Type
... operator_concept_id 0..1 code Operator
... value_as_number 0..1 integer Value as Number
... value_as_concept_id 0..1 code Value as Concept
... unit_concept_id 0..1 code Unit
... range_low 0..1 integer Range Low
... range_high 0..1 integer Range High
... provider_id 0..1 Reference(Provider OMOP Table) Provider
... visit_occurrence_id 0..1 Reference(Visit Occurrence OMOP Table) Visit Occurence
... visit_detail_id 0..1 Reference(Visit Detail OMOP Table) Visit Detail
... measurement_source_value 0..1 string Measurement Source Value
... measurement_source_concept_id 0..1 code Measurement Source
... unit_source_value 0..1 string Unit Source Value
... unit_source_concept_id 0..1 code Unit Source
... value_source_value 0..1 string Value Source Value
... measurement_event_id 0..1 string Measurement Event
... meas_event_field_concept_id 0..1 code Measurement Event Field

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraintsdoco
.. Measurement 0..* Base Measurement OMOP Table
Instances of this logical model are not marked to be the target of a Reference
... measurement_id 1..1 code Measurement Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... measurement_concept_id 1..1 code Measurement
... measurement_datetime 0..1 dateTime Measurement Datetime
... measurement_time 0..1 string Measurement Time
... measurement_type_concept_id 1..1 code Measurement Type
... operator_concept_id 0..1 code Operator
... value_as_number 0..1 integer Value as Number
... value_as_concept_id 0..1 code Value as Concept
... unit_concept_id 0..1 code Unit
... range_low 0..1 integer Range Low
... range_high 0..1 integer Range High
... provider_id 0..1 Reference(Provider OMOP Table) Provider
... visit_occurrence_id 0..1 Reference(Visit Occurrence OMOP Table) Visit Occurence
... visit_detail_id 0..1 Reference(Visit Detail OMOP Table) Visit Detail
... measurement_source_value 0..1 string Measurement Source Value
... measurement_source_concept_id 0..1 code Measurement Source
... unit_source_value 0..1 string Unit Source Value
... unit_source_concept_id 0..1 code Unit Source
... value_source_value 0..1 string Value Source Value
... measurement_event_id 0..1 string Measurement Event
... meas_event_field_concept_id 0..1 code Measurement Event Field

doco Documentation for this format

 

Other representations of profile: CSV, Excel