minimal Common Oncology Data Elements (mCODE) Implementation Guide
4.0.0-ballot - STU4 Ballot United States of America flag

minimal Common Oncology Data Elements (mCODE) Implementation Guide, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-mCODE-ig/ and changes regularly. See the Directory of published versions

Example Observation: genomic-variant-somatic-single-nucleotide

Generated Narrative: Observation genomic-variant-somatic-single-nucleotide

status: Final

category: Laboratory

code: Genetic variant assessment

subject: John B. Anyperson Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))

effective: 2019-04-01

performer: Practitioner Owen Oncologist

value: Present

interpretation: Positive (qualifier value)

method: Sequencing

component

code: Gene studied [ID]

value: STK11

component

code: Discrete genetic variant

value: NM_000455.5(STK11):c.725G>A (p.Gly242Glu)

component

code: Genomic DNA change (gHGVS)

value: NM_000455.5:c.725G>A

component

code: Genomic source class [Type]

value: Somatic