FHIR Extensions Pack
5.1.0-cibuild - Working Copy International flag

FHIR Extensions Pack, published by HL7 International / FHIR Infrastructure. This guide is not an authorized publication; it is the continuous build for version 5.1.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-extensions/ and changes regularly. See the Directory of published versions

: FML Conversion for Specimen: R4B to R5 - JSON Representation

Page standards status: Trial-use Maturity Level: 1

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{
  "resourceType" : "StructureMap",
  "id" : "Specimen4Bto5",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/StructureMap/Specimen4Bto5'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'Specimen4Bto5'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'FML Conversion for Specimen: R4B to R5'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'active'</span>\r\n\r\n<b>conceptmap</b><span style=\"color: navy\"> &quot;</span>SpecimenStatus<span style=\"color: navy\">&quot; {\r\n</span><b>  prefix </b>s<span style=\"color: navy\"> = &quot;</span><a href=\"http://hl7.org/fhir/R4B/codesystem-specimen-status.html\" title=\"SpecimenStatus\">http://hl7.org/fhir/4.3/specimen-status</a><span style=\"color: navy\">&quot;\r\n</span><b>  prefix </b>t<span style=\"color: navy\"> = &quot;</span><a href=\"http://hl7.org/fhir/R5/codesystem-specimen-status.html\" title=\"Specimen Status\">http://hl7.org/fhir/specimen-status</a><span style=\"color: navy\">&quot;\r\n</span>\r\n  s<span style=\"color: navy\">:</span>available <b>-</b> t<span style=\"color: navy\">:</span>available\r\n  s<span style=\"color: navy\">:</span>unavailable <b>-</b> t<span style=\"color: navy\">:</span>unavailable\r\n  s<span style=\"color: navy\">:</span>unsatisfactory <b>-</b> t<span style=\"color: navy\">:</span>unsatisfactory\r\n  s<span style=\"color: navy\">:</span>&quot;entered-in-error&quot; <b>-</b> t<span style=\"color: navy\">:</span><span style=\"color: navy\">&quot;</span>entered-in-error<span style=\"color: navy\">&quot;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"http://hl7.org/fhir/R4B/specimen.html\" title=\"Specimen\">http://hl7.org/fhir/4.3/StructureDefinition/Specimen</a><span style=\"color: navy\">&quot; </span><b>alias </b>SpecimenR4B <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"http://hl7.org/fhir/R5/specimen.html\" title=\"Specimen\">http://hl7.org/fhir/StructureDefinition/Specimen</a><span style=\"color: navy\">&quot; </span><b>alias </b>SpecimenR5 <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> &quot;</span>http://hl7.org/fhir/StructureMap/*4Bto5<span style=\"color: navy\">&quot;\r\n</span>\r\n<b>group </b>Specimen<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>SpecimenR4B, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>SpecimenR5<span style=\"color: navy\">)</span><b> extends </b>DomainResource<b> &lt;&lt;type+&gt;&gt;</b><span style=\"color: navy\"> {\r\n</span>  src.identifier<span style=\"color: navy\"><b> -&gt; </b></span>tgt.identifier<span style=\"color: navy\">;</span>\r\n  src.accessionIdentifier<span style=\"color: navy\"><b> -&gt; </b></span>tgt.accessionIdentifier<span style=\"color: navy\">;</span>\r\n  src.status<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.status = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'#SpecimenStatus'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.type<span style=\"color: navy\"><b> -&gt; </b></span>tgt.type<span style=\"color: navy\">;</span>\r\n  src.subject<span style=\"color: navy\"><b> -&gt; </b></span>tgt.subject<span style=\"color: navy\">;</span>\r\n  src.receivedTime<span style=\"color: navy\"><b> -&gt; </b></span>tgt.receivedTime<span style=\"color: navy\">;</span>\r\n  src.parent<span style=\"color: navy\"><b> -&gt; </b></span>tgt.parent<span style=\"color: navy\">;</span>\r\n  src.request<span style=\"color: navy\"><b> -&gt; </b></span>tgt.request<span style=\"color: navy\">;</span>\r\n  src.collection<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.collection<b> as </b><span style=\"color: maroon\">t</span><b> then </b>SpecimenCollection<span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">t</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">src.combined as v -&gt; tgt.combined = translate(v, '#PublicationStatus', 'code');</span>\r\n  src.processing<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.processing<b> as </b><span style=\"color: maroon\">t</span><b> then </b>SpecimenProcessing<span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">t</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.container<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.container<b> as </b><span style=\"color: maroon\">t</span><b> then </b>SpecimenContainer<span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">t</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.condition<span style=\"color: navy\"><b> -&gt; </b></span>tgt.condition<span style=\"color: navy\">;</span>\r\n  src.note<span style=\"color: navy\"><b> -&gt; </b></span>tgt.note<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">group SpecimenFeature(source src, target tgt) extends BackboneElement {</span>\r\n<span style=\"color: #b36b00\" title=\"This element was not defined prior to R5\">// src.type -&gt; tgt.type;</span>\r\n<span style=\"color: #b36b00\" title=\"This element was not defined prior to R5\">// src.description -&gt; tgt.description;</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">}</span>\r\n<b>group </b>SpecimenCollection<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.collector<span style=\"color: navy\"><b> -&gt; </b></span>tgt.collector<span style=\"color: navy\">;</span>\r\n  src.collected<span style=\"color: navy\"> : </span>dateTime<span style=\"color: navy\"><b> -&gt; </b></span>tgt.collected<span style=\"color: navy\">;</span>\r\n  src.collected<span style=\"color: navy\"> : </span>Period<span style=\"color: navy\"><b> -&gt; </b></span>tgt.collected<span style=\"color: navy\">;</span>\r\n  src.duration<span style=\"color: navy\"><b> -&gt; </b></span>tgt.duration<span style=\"color: navy\">;</span>\r\n  src.quantity<span style=\"color: navy\"><b> -&gt; </b></span>tgt.quantity<span style=\"color: navy\">;</span>\r\n  src.method<span style=\"color: navy\"><b> -&gt; </b></span>tgt.method<span style=\"color: navy\">;</span>\r\n  src.bodySite<span style=\"color: navy\"><b> -&gt; </b></span>tgt.bodySite<span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">src.device -&gt; tgt.device;</span>\r\n  src.fastingStatus<span style=\"color: navy\"> : </span>CodeableConcept<span style=\"color: navy\"><b> -&gt; </b></span>tgt.fastingStatus<span style=\"color: navy\">;</span>\r\n  src.fastingStatus<span style=\"color: navy\"> : </span>Duration<span style=\"color: navy\"><b> -&gt; </b></span>tgt.fastingStatus<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>SpecimenProcessing<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.description<span style=\"color: navy\"><b> -&gt; </b></span>tgt.description<span style=\"color: navy\">;</span>\r\n  src.procedure<span style=\"color: navy\"><b> -&gt; </b></span>tgt.method<span style=\"color: navy\">;</span>\r\n  src.additive<span style=\"color: navy\"><b> -&gt; </b></span>tgt.additive<span style=\"color: navy\">;</span>\r\n  src.time<span style=\"color: navy\"> : </span>dateTime<span style=\"color: navy\"><b> -&gt; </b></span>tgt.time<span style=\"color: navy\">;</span>\r\n  src.time<span style=\"color: navy\"> : </span>Period<span style=\"color: navy\"><b> -&gt; </b></span>tgt.time<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>SpecimenContainer<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.specimenQuantity<span style=\"color: navy\"><b> -&gt; </b></span>tgt.specimenQuantity<span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">src.device -&gt; tgt.device;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
  },
  "contained" : [
    {
      "resourceType" : "ConceptMap",
      "id" : "SpecimenStatus",
      "status" : "active",
      "group" : [
        {
          "source" : "http://hl7.org/fhir/4.3/specimen-status",
          "target" : "http://hl7.org/fhir/specimen-status",
          "element" : [
            {
              "code" : "available",
              "target" : [
                {
                  "code" : "available",
                  "relationship" : "related-to"
                }
              ]
            },
            {
              "code" : "unavailable",
              "target" : [
                {
                  "code" : "unavailable",
                  "relationship" : "related-to"
                }
              ]
            },
            {
              "code" : "unsatisfactory",
              "target" : [
                {
                  "code" : "unsatisfactory",
                  "relationship" : "related-to"
                }
              ]
            },
            {
              "code" : "entered-in-error",
              "target" : [
                {
                  "code" : "entered-in-error",
                  "relationship" : "related-to"
                }
              ]
            }
          ]
        }
      ]
    }
  ],
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode" : "fhir"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
      "valueInteger" : 1,
      "_valueInteger" : {
        "extension" : [
          {
            "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical" : "http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions"
          }
        ]
      }
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode" : "trial-use",
      "_valueCode" : {
        "extension" : [
          {
            "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical" : "http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions"
          }
        ]
      }
    }
  ],
  "url" : "http://hl7.org/fhir/StructureMap/Specimen4Bto5",
  "version" : "5.1.0-cibuild",
  "name" : "Specimen4Bto5",
  "title" : "FML Conversion for Specimen: R4B to R5",
  "status" : "active",
  "date" : "2024-04-03T19:53:55+00:00",
  "publisher" : "HL7 International / FHIR Infrastructure",
  "contact" : [
    {
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://www.hl7.org/Special/committees/fiwg"
        }
      ]
    }
  ],
  "description" : "FMLConversionforSpecimenR4BtoR5",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code" : "001"
        }
      ]
    }
  ],
  "structure" : [
    {
      "url" : "http://hl7.org/fhir/4.3/StructureDefinition/Specimen",
      "mode" : "source",
      "alias" : "SpecimenR4B"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/Specimen",
      "mode" : "target",
      "alias" : "SpecimenR5"
    }
  ],
  "import" : [
    "http://hl7.org/fhir/StructureMap/*4Bto5"
  ],
  "group" : [
    {
      "name" : "Specimen",
      "extends" : "DomainResource",
      "typeMode" : "type-and-types",
      "input" : [
        {
          "name" : "src",
          "type" : "SpecimenR4B",
          "mode" : "source"
        },
        {
          "name" : "tgt",
          "type" : "SpecimenR5",
          "mode" : "target"
        }
      ],
      "rule" : [
        {
          "name" : "identifier",
          "source" : [
            {
              "context" : "src",
              "element" : "identifier",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "identifier",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "accessionIdentifier",
          "source" : [
            {
              "context" : "src",
              "element" : "accessionIdentifier",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "accessionIdentifier",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "status",
          "source" : [
            {
              "context" : "src",
              "element" : "status",
              "variable" : "v"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "status",
              "transform" : "translate",
              "parameter" : [
                {
                  "valueId" : "v"
                },
                {
                  "valueString" : "#SpecimenStatus"
                },
                {
                  "valueString" : "code"
                }
              ]
            }
          ]
        },
        {
          "name" : "type",
          "source" : [
            {
              "context" : "src",
              "element" : "type",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "type",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "subject",
          "source" : [
            {
              "context" : "src",
              "element" : "subject",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "subject",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "receivedTime",
          "source" : [
            {
              "context" : "src",
              "element" : "receivedTime",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "receivedTime",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "parent",
          "source" : [
            {
              "context" : "src",
              "element" : "parent",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "parent",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
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          ]
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        {
          "name" : "request",
          "source" : [
            {
              "context" : "src",
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              "variable" : "vvv"
            }
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            {
              "context" : "tgt",
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            }
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              "name" : "DefaultMappingGroupAnonymousAlias",
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                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "collection",
          "source" : [
            {
              "context" : "src",
              "element" : "collection",
              "variable" : "s"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "collection",
              "variable" : "t"
            }
          ],
          "dependent" : [
            {
              "name" : "SpecimenCollection",
              "parameter" : [
                {
                  "valueId" : "s"
                },
                {
                  "valueId" : "t"
                }
              ]
            }
          ],
          "documentation" : "src.combined as v -> tgt.combined = translate(v, '#PublicationStatus', 'code');"
        },
        {
          "name" : "processing",
          "source" : [
            {
              "context" : "src",
              "element" : "processing",
              "variable" : "s"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "processing",
              "variable" : "t"
            }
          ],
          "dependent" : [
            {
              "name" : "SpecimenProcessing",
              "parameter" : [
                {
                  "valueId" : "s"
                },
                {
                  "valueId" : "t"
                }
              ]
            }
          ]
        },
        {
          "name" : "container",
          "source" : [
            {
              "context" : "src",
              "element" : "container",
              "variable" : "s"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "container",
              "variable" : "t"
            }
          ],
          "dependent" : [
            {
              "name" : "SpecimenContainer",
              "parameter" : [
                {
                  "valueId" : "s"
                },
                {
                  "valueId" : "t"
                }
              ]
            }
          ]
        },
        {
          "name" : "condition",
          "source" : [
            {
              "context" : "src",
              "element" : "condition",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "condition",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "note",
          "source" : [
            {
              "context" : "src",
              "element" : "note",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "note",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
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              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "SpecimenCollection",
      "extends" : "BackboneElement",
      "documentation" : "group SpecimenFeature(source src, target tgt) extends BackboneElement {\r\nsrc.type -> tgt.type;\r\nsrc.description -> tgt.description;\r\n}",
      "input" : [
        {
          "name" : "src",
          "mode" : "source"
        },
        {
          "name" : "tgt",
          "mode" : "target"
        }
      ],
      "rule" : [
        {
          "name" : "collector",
          "source" : [
            {
              "context" : "src",
              "element" : "collector",
              "variable" : "vvv"
            }
          ],
          "target" : [
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