FHIR Extensions Pack
5.1.0-cibuild - Working Copy
FHIR Extensions Pack
5.1.0-cibuild - Working Copy
FHIR Extensions Pack, published by HL7 International / FHIR Infrastructure. This guide is not an authorized publication; it is the continuous build for version 5.1.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-extensions/ and changes regularly. See the Directory of published versions
| Page standards status: Trial-use | Maturity Level: 1 |
<StructureMap xmlns="http://hl7.org/fhir">
<id value="MolecularSequence4to5"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><pre class="fml">
<span style="color: #cc00cc">/// <b>url</b> = </span><span style="color: blue">'http://hl7.org/fhir/StructureMap/MolecularSequence4to5'</span>
<span style="color: #cc00cc">/// <b>name</b> = </span><span style="color: blue">'MolecularSequence4to5'</span>
<span style="color: #cc00cc">/// <b>title</b> = </span><span style="color: blue">'FML Conversion for MolecularSequence: R4 to R5'</span>
<span style="color: #cc00cc">/// <b>status</b> = </span><span style="color: blue">'active'</span>
<b>conceptmap</b><span style="color: navy"> "</span>orientationType<span style="color: navy">" {
</span><b> prefix </b>s<span style="color: navy"> = "</span><a href="http://hl7.org/fhir/R4/codesystem-orientation-type.html" title="orientationType">http://hl7.org/fhir/4.0/orientation-type</a><span style="color: navy">"
</span><b> prefix </b>t<span style="color: navy"> = "</span><a href="http://hl7.org/fhir/R5/codesystem-orientation-type.html" title="orientation Type">http://hl7.org/fhir/orientation-type</a><span style="color: navy">"
</span>
s<span style="color: navy">:</span>sense <b>-</b> t<span style="color: navy">:</span>sense
s<span style="color: navy">:</span>antisense <b>-</b> t<span style="color: navy">:</span>antisense
<span style="color: navy">}
</span><b>conceptmap</b><span style="color: navy"> "</span>sequenceType<span style="color: navy">" {
</span><b> prefix </b>s<span style="color: navy"> = "</span><a href="http://hl7.org/fhir/R4/codesystem-sequence-type.html" title="sequenceType">http://hl7.org/fhir/4.0/sequence-type</a><span style="color: navy">"
</span><b> prefix </b>t<span style="color: navy"> = "</span><a href="http://hl7.org/fhir/R5/codesystem-sequence-type.html" title="sequence Type">http://hl7.org/fhir/sequence-type</a><span style="color: navy">"
</span>
s<span style="color: navy">:</span>aa <b>-</b> t<span style="color: navy">:</span>aa
s<span style="color: navy">:</span>dna <b>-</b> t<span style="color: navy">:</span>dna
s<span style="color: navy">:</span>rna <b>-</b> t<span style="color: navy">:</span>rna
<span style="color: navy">}
</span><b>conceptmap</b><span style="color: navy"> "</span>strandType<span style="color: navy">" {
</span><b> prefix </b>s<span style="color: navy"> = "</span><a href="http://hl7.org/fhir/R4/codesystem-strand-type.html" title="strandType">http://hl7.org/fhir/4.0/strand-type</a><span style="color: navy">"
</span><b> prefix </b>t<span style="color: navy"> = "</span><a href="http://hl7.org/fhir/R5/codesystem-strand-type.html" title="strand Type">http://hl7.org/fhir/strand-type</a><span style="color: navy">"
</span>
s<span style="color: navy">:</span>watson <b>-</b> t<span style="color: navy">:</span>watson
s<span style="color: navy">:</span>crick <b>-</b> t<span style="color: navy">:</span>crick
<span style="color: navy">}
</span><b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R4/molecularsequence.html" title="MolecularSequence">http://hl7.org/fhir/4.0/StructureDefinition/MolecularSequence</a><span style="color: navy">" </span><b>alias </b>MolecularSequenceR4 <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R5/molecularsequence.html" title="MolecularSequence">http://hl7.org/fhir/StructureDefinition/MolecularSequence</a><span style="color: navy">" </span><b>alias </b>MolecularSequenceR5 <b>as </b><b>target</b>
<b>imports</b><span style="color: navy"> "</span>http://hl7.org/fhir/StructureMap/*4to5<span style="color: navy">"
</span>
<b>group </b>MolecularSequence<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>MolecularSequenceR4, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy"> : </span>MolecularSequenceR5<span style="color: navy">)</span><b> extends </b>DomainResource<b> <<type+>></b><span style="color: navy"> {
</span> src.identifier<span style="color: navy"><b> -> </b></span>tgt.identifier<span style="color: navy">;</span>
src.type<b> as </b><span style="color: maroon">v</span><span style="color: navy"><b> -> </b></span>tgt.type = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">v</span><span style="color: navy">, </span><span style="color: blue">'#sequenceType'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><span style="color: navy">;</span>
src.patient<span style="color: navy"><b> -> </b></span>tgt.subject<span style="color: navy">;</span>
src.specimen<span style="color: navy"><b> -> </b></span>tgt.specimen<span style="color: navy">;</span> <span style="color: navy">// </span><span style="color: green">src.focus -> tgt.focus;</span>
src.device<span style="color: navy"><b> -> </b></span>tgt.device<span style="color: navy">;</span>
src.performer<span style="color: navy"><b> -> </b></span>tgt.performer<span style="color: navy">;</span>
src.referenceSeq<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span>tgt.relative<b> as </b><span style="color: maroon">t</span><b> then </b>MolecularSequenceReferenceSeq<span style="color: navy">(</span><span style="color: maroon">s</span><span style="color: navy">, </span><span style="color: maroon">t</span><span style="color: navy">)</span><span style="color: navy">;</span> <span style="color: navy">// </span><span style="color: green">src.literal as s -> tgt.literal as t, t.observedSeq = s;</span>
src.variant<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span>tgt.relative<b> as </b><span style="color: maroon">t</span><b> then </b>MolecularSequenceVariant<span style="color: navy">(</span><span style="color: maroon">s</span><span style="color: navy">, </span><span style="color: maroon">t</span><span style="color: navy">)</span><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>MolecularSequenceReferenceSeq<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span>, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy">)</span><b> extends </b>BackboneElement<span style="color: navy"> {
</span> src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '1'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21254-0'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 1'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '2'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21255-7'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 2'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '3'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21256-5'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 3'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '4'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21257-3'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 4'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '5'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21258-1'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 5'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '6'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21259-9'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 6'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '7'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21260-7'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 7'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '8'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21261-5'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 8'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '9'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21262-3'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 9'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '10'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21263-1'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 10'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '11'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21264-9'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 11'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '12'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21265-6'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 12'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '13'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21266-4'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 13'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '14'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21267-2'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 14'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '15'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21268-0'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 15'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '16'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21269-8'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 16'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '17'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21270-6'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 17'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '18'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21271-4'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 18'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '19'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21272-2'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 19'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '20'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21273-0'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 20'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '21'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21274-8'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 21'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = '22'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21275-5'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome 22'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'X'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21276-3'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome X'</span><span style="color: navy">;</span>
src.chromosome<b> as </b><span style="color: maroon">s</span><b> where </b>code = 'Y'<span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.chromosome = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tc</span><span style="color: navy">, </span> tc.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tcc</span><span style="color: navy">, </span> tcc.system = <span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span> tcc.code = <span style="color: blue">'LA21277-1'</span><span style="color: navy">, </span> tcc.display = <span style="color: blue">'Chromosome Y'</span><span style="color: navy">;</span>
src.referenceSeqId<span style="color: navy"> : </span>CodeableConcept<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.sequence = <span style="color: maroon">s</span><span style="color: navy">;</span>
src.referenceSeqPointer<span style="color: navy"> : </span>Reference<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.sequence = <span style="color: maroon">s</span><span style="color: navy">;</span>
src.referenceSeqString<span style="color: navy"> : </span>string<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.sequence = <span style="color: maroon">s</span><span style="color: navy">;</span>
src.windowStart<span style="color: navy"> : </span>integer<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.windowStart = <span style="color: maroon">s</span><span style="color: navy">;</span>
src.windowEnd<span style="color: navy"> : </span>integer<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.windowEnd = <span style="color: maroon">s</span><span style="color: navy">;</span>
src.orientation<b> as </b><span style="color: maroon">v</span><span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.orientation = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">v</span><span style="color: navy">, </span><span style="color: blue">'#orientationType'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><span style="color: navy">;</span>
src.strand<b> as </b><span style="color: maroon">v</span><span style="color: navy"><b> -> </b></span> tgt.startingSequence<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.strand = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">v</span><span style="color: navy">, </span><span style="color: blue">'#strandType'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>MolecularSequenceVariant<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span>, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy">)</span><b> extends </b>BackboneElement<span style="color: navy"> {
</span> src.start<span style="color: navy"> : </span>integer<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.edit<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.start = <span style="color: maroon">s</span><span style="color: navy">;</span>
src.end<span style="color: navy"> : </span>integer<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.edit<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.end = <span style="color: maroon">s</span><span style="color: navy">;</span>
src.observedAllele<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.edit<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.replacementSequence = <span style="color: maroon">s</span><span style="color: navy">;</span>
src.referenceAllele<b> as </b><span style="color: maroon">s</span><span style="color: navy"><b> -> </b></span> tgt.edit<b> as </b><span style="color: maroon">t</span><span style="color: navy">, </span> t.replacedSequence = <span style="color: maroon">s</span><span style="color: navy">;</span>
<span style="color: navy">}
</span></pre></div>
</text>
<contained>
<ConceptMap>
<id value="orientationType"/>
<status value="active"/>
<group>
<source value="http://hl7.org/fhir/4.0/orientation-type"/>
<target value="http://hl7.org/fhir/orientation-type"/>
<element>
<code value="sense"/>
<target>
<code value="sense"/>
<relationship value="related-to"/>
</target>
</element>
<element>
<code value="antisense"/>
<target>
<code value="antisense"/>
<relationship value="related-to"/>
</target>
</element>
</group>
</ConceptMap>
</contained>
<contained>
<ConceptMap>
<id value="sequenceType"/>
<status value="active"/>
<group>
<source value="http://hl7.org/fhir/4.0/sequence-type"/>
<target value="http://hl7.org/fhir/sequence-type"/>
<element>
<code value="aa"/>
<target>
<code value="aa"/>
<relationship value="related-to"/>
</target>
</element>
<element>
<code value="dna"/>
<target>
<code value="dna"/>
<relationship value="related-to"/>
</target>
</element>
<element>
<code value="rna"/>
<target>
<code value="rna"/>
<relationship value="related-to"/>
</target>
</element>
</group>
</ConceptMap>
</contained>
<contained>
<ConceptMap>
<id value="strandType"/>
<status value="active"/>
<group>
<source value="http://hl7.org/fhir/4.0/strand-type"/>
<target value="http://hl7.org/fhir/strand-type"/>
<element>
<code value="watson"/>
<target>
<code value="watson"/>
<relationship value="related-to"/>
</target>
</element>
<element>
<code value="crick"/>
<target>
<code value="crick"/>
<relationship value="related-to"/>
</target>
</element>
</group>
</ConceptMap>
</contained>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="fhir"/>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
<valueInteger value="1">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions"/>
</extension>
</valueInteger>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
<valueCode value="trial-use">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions"/>
</extension>
</valueCode>
</extension>
<url value="http://hl7.org/fhir/StructureMap/MolecularSequence4to5"/>
<version value="5.1.0-cibuild"/>
<name value="MolecularSequence4to5"/>
<title value="FML Conversion for MolecularSequence: R4 to R5"/>
<status value="active"/>
<date value="2024-04-21T19:47:28+00:00"/>
<publisher value="HL7 International / FHIR Infrastructure"/>
<contact>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/fiwg"/>
</telecom>
</contact>
<description value="FMLConversionforMolecularSequenceR4toR5"/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
</coding>
</jurisdiction>
<structure>
<url
value="http://hl7.org/fhir/4.0/StructureDefinition/MolecularSequence"/>
<mode value="source"/>
<alias value="MolecularSequenceR4"/>
</structure>
<structure>
<url value="http://hl7.org/fhir/StructureDefinition/MolecularSequence"/>
<mode value="target"/>
<alias value="MolecularSequenceR5"/>
</structure>
<import value="http://hl7.org/fhir/StructureMap/*4to5"/>
<group>
<name value="MolecularSequence"/>
<extends value="DomainResource"/>
<typeMode value="type-and-types"/>
<input>
<name value="src"/>
<type value="MolecularSequenceR4"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<type value="MolecularSequenceR5"/>
<mode value="target"/>
</input>
<rule>
<name value="identifier"/>
<source>
<context value="src"/>
<element value="identifier"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="identifier"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="type"/>
<source>
<context value="src"/>
<element value="type"/>
<variable value="v"/>
</source>
<target>
<context value="tgt"/>
<element value="type"/>
<transform value="translate"/>
<parameter>
<valueId value="v"/>
</parameter>
<parameter>
<valueString value="#sequenceType"/>
</parameter>
<parameter>
<valueString value="code"/>
</parameter>
</target>
</rule>
<rule>
<name value="patient"/>
<source>
<context value="src"/>
<element value="patient"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="subject"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="specimen"/>
<source>
<context value="src"/>
<element value="specimen"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="specimen"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
<documentation value="src.focus -> tgt.focus;"/>
</rule>
<rule>
<name value="device"/>
<source>
<context value="src"/>
<element value="device"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="device"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="performer"/>
<source>
<context value="src"/>
<element value="performer"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="performer"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="referenceSeq"/>
<source>
<context value="src"/>
<element value="referenceSeq"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="relative"/>
<variable value="t"/>
</target>
<dependent>
<name value="MolecularSequenceReferenceSeq"/>
<parameter>
<valueId value="s"/>
</parameter>
<parameter>
<valueId value="t"/>
</parameter>
</dependent>
<documentation
value="src.literal as s -> tgt.literal as t, t.observedSeq = s;"/>
</rule>
<rule>
<name value="variant"/>
<source>
<context value="src"/>
<element value="variant"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="relative"/>
<variable value="t"/>
</target>
<dependent>
<name value="MolecularSequenceVariant"/>
<parameter>
<valueId value="s"/>
</parameter>
<parameter>
<valueId value="t"/>
</parameter>
</dependent>
</rule>
</group>
<group>
<name value="MolecularSequenceReferenceSeq"/>
<extends value="BackboneElement"/>
<input>
<name value="src"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<mode value="target"/>
</input>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '1'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21254-0"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 1"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '2'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21255-7"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 2"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '3'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21256-5"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 3"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '4'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21257-3"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 4"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '5'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21258-1"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 5"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '6'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21259-9"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 6"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '7'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21260-7"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 7"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '8'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21261-5"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 8"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '9'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21262-3"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 9"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '10'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21263-1"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 10"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '11'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21264-9"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 11"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '12'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21265-6"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 12"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '13'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21266-4"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 13"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '14'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21267-2"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 14"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '15'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21268-0"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 15"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '16'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21269-8"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 16"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '17'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
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</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21270-6"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 17"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '18'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21271-4"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 18"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '19'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21272-2"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 19"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '20'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21273-0"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 20"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '21'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21274-8"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 21"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = '22'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21275-5"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome 22"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = 'X'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21276-3"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome X"/>
</parameter>
</target>
</rule>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="s"/>
<condition value="code = 'Y'"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="chromosome"/>
<variable value="tc"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<target>
<context value="tc"/>
<element value="coding"/>
<variable value="tcc"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="LA21277-1"/>
</parameter>
</target>
<target>
<context value="tcc"/>
<element value="display"/>
<transform value="copy"/>
<parameter>
<valueString value="Chromosome Y"/>
</parameter>
</target>
</rule>
<rule>
<name value="referenceSeqIdCodeableConcept"/>
<source>
<context value="src"/>
<type value="CodeableConcept"/>
<element value="referenceSeqId"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="sequence"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
<rule>
<name value="referenceSeqPointerReference"/>
<source>
<context value="src"/>
<type value="Reference"/>
<element value="referenceSeqPointer"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="sequence"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
<rule>
<name value="referenceSeqStringString"/>
<source>
<context value="src"/>
<type value="string"/>
<element value="referenceSeqString"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="sequence"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
<rule>
<name value="windowStartInteger"/>
<source>
<context value="src"/>
<type value="integer"/>
<element value="windowStart"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="windowStart"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
<rule>
<name value="windowEndInteger"/>
<source>
<context value="src"/>
<type value="integer"/>
<element value="windowEnd"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="windowEnd"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
<rule>
<name value="orientation"/>
<source>
<context value="src"/>
<element value="orientation"/>
<variable value="v"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="orientation"/>
<transform value="translate"/>
<parameter>
<valueId value="v"/>
</parameter>
<parameter>
<valueString value="#orientationType"/>
</parameter>
<parameter>
<valueString value="code"/>
</parameter>
</target>
</rule>
<rule>
<name value="strand"/>
<source>
<context value="src"/>
<element value="strand"/>
<variable value="v"/>
</source>
<target>
<context value="tgt"/>
<element value="startingSequence"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="strand"/>
<transform value="translate"/>
<parameter>
<valueId value="v"/>
</parameter>
<parameter>
<valueString value="#strandType"/>
</parameter>
<parameter>
<valueString value="code"/>
</parameter>
</target>
</rule>
</group>
<group>
<name value="MolecularSequenceVariant"/>
<extends value="BackboneElement"/>
<input>
<name value="src"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<mode value="target"/>
</input>
<rule>
<name value="startInteger"/>
<source>
<context value="src"/>
<type value="integer"/>
<element value="start"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="edit"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="start"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
<rule>
<name value="endInteger"/>
<source>
<context value="src"/>
<type value="integer"/>
<element value="end"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="edit"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="end"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
<rule>
<name value="observedAllele"/>
<source>
<context value="src"/>
<element value="observedAllele"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="edit"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="replacementSequence"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
<rule>
<name value="referenceAllele"/>
<source>
<context value="src"/>
<element value="referenceAllele"/>
<variable value="s"/>
</source>
<target>
<context value="tgt"/>
<element value="edit"/>
<variable value="t"/>
</target>
<target>
<context value="t"/>
<element value="replacedSequence"/>
<transform value="copy"/>
<parameter>
<valueId value="s"/>
</parameter>
</target>
</rule>
</group>
</StructureMap>
IG © 2022+ HL7 International / FHIR Infrastructure. Package hl7.fhir.uv.extensions#5.1.0-cibuild based on FHIR 5.0.0. Generated 2024-04-21
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