{
  "resourceType" : "StructureMap",
  "id" : "Sequence4to3",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/StructureMap/Sequence4to3 Transforms: R4 to R3'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'Sequence4to3'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'R4 to R3 Conversion for Sequence'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'active'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span>http://hl7.org/fhir/4.0/MolecularSequence<span style=\"color: navy\">&quot; </span><b>alias </b>Sequence <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span>http://hl7.org/fhir/3.0/Sequence<span style=\"color: navy\">&quot; </span><b>alias </b>SequenceR3 <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> &quot;</span>http://hl7.org/fhir/StructureMap/*4to3<span style=\"color: navy\">&quot;\r\n</span>\r\n<b>group </b>Sequence<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>MolecularSequence, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>SequenceR3<span style=\"color: navy\">)</span><b> extends </b>DomainResource<b> &lt;&lt;type+&gt;&gt;</b><span style=\"color: navy\"> {\r\n</span>  src.identifier<span style=\"color: navy\"><b> -&gt; </b></span>tgt.identifier<span style=\"color: navy\">;</span>\r\n  src.type<span style=\"color: navy\"><b> -&gt; </b></span>tgt.type<span style=\"color: navy\">;</span>\r\n  src.coordinateSystem<span style=\"color: navy\"><b> -&gt; </b></span>tgt.coordinateSystem<span style=\"color: navy\">;</span>\r\n  src.patient<span style=\"color: navy\"><b> -&gt; </b></span>tgt.patient<span style=\"color: navy\">;</span>\r\n  src.specimen<span style=\"color: navy\"><b> -&gt; </b></span>tgt.specimen<span style=\"color: navy\">;</span>\r\n  src.device<span style=\"color: navy\"><b> -&gt; </b></span>tgt.device<span style=\"color: navy\">;</span>\r\n  src.performer<span style=\"color: navy\"><b> -&gt; </b></span>tgt.performer<span style=\"color: navy\">;</span>\r\n  src.quantity<span style=\"color: navy\"><b> -&gt; </b></span>tgt.quantity<span style=\"color: navy\">;</span>\r\n  src.referenceSeq<b> as </b><span style=\"color: maroon\">vs0</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceSeq<b> as </b><span style=\"color: maroon\">vt0</span><b> then </b>referenceSeq<span style=\"color: navy\">(</span><span style=\"color: maroon\">vs0</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vt0</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.variant<b> as </b><span style=\"color: maroon\">vs0</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.variant<b> as </b><span style=\"color: maroon\">vt0</span><b> then </b>variant<span style=\"color: navy\">(</span><span style=\"color: maroon\">vs0</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vt0</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.observedSeq<span style=\"color: navy\"><b> -&gt; </b></span>tgt.observedSeq<span style=\"color: navy\">;</span>\r\n  src.quality<b> as </b><span style=\"color: maroon\">vs0</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.quality<b> as </b><span style=\"color: maroon\">vt0</span><b> then </b>quality<span style=\"color: navy\">(</span><span style=\"color: maroon\">vs0</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vt0</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.readCoverage<span style=\"color: navy\"><b> -&gt; </b></span>tgt.readCoverage<span style=\"color: navy\">;</span>\r\n  src.repository<b> as </b><span style=\"color: maroon\">vs0</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.repository<b> as </b><span style=\"color: maroon\">vt0</span><b> then </b>repository<span style=\"color: navy\">(</span><span style=\"color: maroon\">vs0</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vt0</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.pointer<span style=\"color: navy\"><b> -&gt; </b></span>tgt.pointer<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>referenceSeq<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.chromosome<span style=\"color: navy\"><b> -&gt; </b></span>tgt.chromosome<span style=\"color: navy\">;</span>\r\n  src.genomeBuild<span style=\"color: navy\"><b> -&gt; </b></span>tgt.genomeBuild<span style=\"color: navy\">;</span>\r\n  src.referenceSeqId<span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceSeqId<span style=\"color: navy\">;</span>\r\n  src.referenceSeqPointer<span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceSeqPointer<span style=\"color: navy\">;</span>\r\n  src.referenceSeqString<span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceSeqString<span style=\"color: navy\">;</span>\r\n  src.strand<b> where </b>value = 'watson'<span style=\"color: navy\"><b> -&gt; </b></span>tgt.strand = <span style=\"color: blue\">'1'</span><span style=\"color: navy\">;</span>\r\n  src.strand<b> as </b><span style=\"color: maroon\">vvv</span><b> where </b>value = 'crick'<span style=\"color: navy\"><b> -&gt; </b></span>tgt.strand = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">''</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">vvv</span> <i>&quot;1&quot;</i><span style=\"color: navy\">;</span>\r\n  src.windowStart<span style=\"color: navy\"><b> -&gt; </b></span>tgt.windowStart<span style=\"color: navy\">;</span>\r\n  src.windowEnd<span style=\"color: navy\"><b> -&gt; </b></span>tgt.windowEnd<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>variant<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.start<span style=\"color: navy\"><b> -&gt; </b></span>tgt.start<span style=\"color: navy\">;</span>\r\n  src.end<span style=\"color: navy\"><b> -&gt; </b></span>tgt.end<span style=\"color: navy\">;</span>\r\n  src.observedAllele<span style=\"color: navy\"><b> -&gt; </b></span>tgt.observedAllele<span style=\"color: navy\">;</span>\r\n  src.referenceAllele<span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceAllele<span style=\"color: navy\">;</span>\r\n  src.cigar<span style=\"color: navy\"><b> -&gt; </b></span>tgt.cigar<span style=\"color: navy\">;</span>\r\n  src.variantPointer<span style=\"color: navy\"><b> -&gt; </b></span>tgt.variantPointer<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>quality<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.type<span style=\"color: navy\"><b> -&gt; </b></span>tgt.type<span style=\"color: navy\">;</span>\r\n  src.standardSequence<span style=\"color: navy\"><b> -&gt; </b></span>tgt.standardSequence<span style=\"color: navy\">;</span>\r\n  src.start<span style=\"color: navy\"><b> -&gt; </b></span>tgt.start<span style=\"color: navy\">;</span>\r\n  src.end<span style=\"color: navy\"><b> -&gt; </b></span>tgt.end<span style=\"color: navy\">;</span>\r\n  src.score<span style=\"color: navy\"><b> -&gt; </b></span>tgt.score<span style=\"color: navy\">;</span>\r\n  src.method<span style=\"color: navy\"><b> -&gt; </b></span>tgt.method<span style=\"color: navy\">;</span>\r\n  src.truthTP<span style=\"color: navy\"><b> -&gt; </b></span>tgt.truthTP<span style=\"color: navy\">;</span>\r\n  src.queryTP<span style=\"color: navy\"><b> -&gt; </b></span>tgt.queryTP<span style=\"color: navy\">;</span>\r\n  src.truthFN<span style=\"color: navy\"><b> -&gt; </b></span>tgt.truthFN<span style=\"color: navy\">;</span>\r\n  src.queryFP<span style=\"color: navy\"><b> -&gt; </b></span>tgt.queryFP<span style=\"color: navy\">;</span>\r\n  src.gtFP<span style=\"color: navy\"><b> -&gt; </b></span>tgt.gtFP<span style=\"color: navy\">;</span>\r\n  src.precision<span style=\"color: navy\"><b> -&gt; </b></span>tgt.precision<span style=\"color: navy\">;</span>\r\n  src.recall<span style=\"color: navy\"><b> -&gt; </b></span>tgt.recall<span style=\"color: navy\">;</span>\r\n  src.fScore<span style=\"color: navy\"><b> -&gt; </b></span>tgt.fScore<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>repository<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.type<span style=\"color: navy\"><b> -&gt; </b></span>tgt.type<span style=\"color: navy\">;</span>\r\n  src.url<span style=\"color: navy\"><b> -&gt; </b></span>tgt.url<span style=\"color: navy\">;</span>\r\n  src.name<span style=\"color: navy\"><b> -&gt; </b></span>tgt.name<span style=\"color: navy\">;</span>\r\n  src.datasetId<span style=\"color: navy\"><b> -&gt; </b></span>tgt.datasetId<span style=\"color: navy\">;</span>\r\n  src.variantsetId<span style=\"color: navy\"><b> -&gt; </b></span>tgt.variantsetId<span style=\"color: navy\">;</span>\r\n  src.readsetId<span style=\"color: navy\"><b> -&gt; </b></span>tgt.readsetId<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
  },
  "extension" : [{
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode" : "fhir"
  },
  {
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
    "valueInteger" : 1,
    "_valueInteger" : {
      "extension" : [{
        "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
        "valueCanonical" : "http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.xver"
      }]
    }
  },
  {
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
    "valueCode" : "draft",
    "_valueCode" : {
      "extension" : [{
        "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
        "valueCanonical" : "http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.xver"
      }]
    }
  }],
  "url" : "http://hl7.org/fhir/StructureMap/Sequence4to3 Transforms: R4 to R3",
  "version" : "0.1.0",
  "name" : "Sequence4to3",
  "title" : "R4 to R3 Conversion for Sequence",
  "status" : "active",
  "date" : "2024-02-22T03:16:50+00:00",
  "publisher" : "HL7 International / FHIR Infrastructure",
  "contact" : [{
    "telecom" : [{
      "system" : "url",
      "value" : "http://www.hl7.org/Special/committees/fiwg"
    }]
  }],
  "description" : "R4toR3ConversionforSequence",
  "jurisdiction" : [{
    "coding" : [{
      "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "code" : "001"
    }]
  }],
  "structure" : [{
    "url" : "http://hl7.org/fhir/4.0/MolecularSequence",
    "mode" : "source",
    "alias" : "Sequence"
  },
  {
    "url" : "http://hl7.org/fhir/3.0/Sequence",
    "mode" : "target",
    "alias" : "SequenceR3"
  }],
  "import" : ["http://hl7.org/fhir/StructureMap/*4to3"],
  "group" : [{
    "name" : "Sequence",
    "extends" : "DomainResource",
    "typeMode" : "type-and-types",
    "input" : [{
      "name" : "src",
      "type" : "MolecularSequence",
      "mode" : "source"
    },
    {
      "name" : "tgt",
      "type" : "SequenceR3",
      "mode" : "target"
    }],
    "rule" : [{
      "name" : "identifier",
      "source" : [{
        "context" : "src",
        "element" : "identifier",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "identifier",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "type",
      "source" : [{
        "context" : "src",
        "element" : "type",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "type",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "coordinateSystem",
      "source" : [{
        "context" : "src",
        "element" : "coordinateSystem",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "coordinateSystem",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "patient",
      "source" : [{
        "context" : "src",
        "element" : "patient",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "patient",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "specimen",
      "source" : [{
        "context" : "src",
        "element" : "specimen",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "specimen",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "device",
      "source" : [{
        "context" : "src",
        "element" : "device",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "device",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "performer",
      "source" : [{
        "context" : "src",
        "element" : "performer",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "performer",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "quantity",
      "source" : [{
        "context" : "src",
        "element" : "quantity",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "quantity",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "referenceSeq",
      "source" : [{
        "context" : "src",
        "element" : "referenceSeq",
        "variable" : "vs0"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "referenceSeq",
        "variable" : "vt0"
      }],
      "dependent" : [{
        "name" : "referenceSeq",
        "parameter" : [{
          "valueId" : "vs0"
        },
        {
          "valueId" : "vt0"
        }]
      }]
    },
    {
      "name" : "variant",
      "source" : [{
        "context" : "src",
        "element" : "variant",
        "variable" : "vs0"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "variant",
        "variable" : "vt0"
      }],
      "dependent" : [{
        "name" : "variant",
        "parameter" : [{
          "valueId" : "vs0"
        },
        {
          "valueId" : "vt0"
        }]
      }]
    },
    {
      "name" : "observedSeq",
      "source" : [{
        "context" : "src",
        "element" : "observedSeq",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "observedSeq",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "quality",
      "source" : [{
        "context" : "src",
        "element" : "quality",
        "variable" : "vs0"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "quality",
        "variable" : "vt0"
      }],
      "dependent" : [{
        "name" : "quality",
        "parameter" : [{
          "valueId" : "vs0"
        },
        {
          "valueId" : "vt0"
        }]
      }]
    },
    {
      "name" : "readCoverage",
      "source" : [{
        "context" : "src",
        "element" : "readCoverage",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "readCoverage",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "repository",
      "source" : [{
        "context" : "src",
        "element" : "repository",
        "variable" : "vs0"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "repository",
        "variable" : "vt0"
      }],
      "dependent" : [{
        "name" : "repository",
        "parameter" : [{
          "valueId" : "vs0"
        },
        {
          "valueId" : "vt0"
        }]
      }]
    },
    {
      "name" : "pointer",
      "source" : [{
        "context" : "src",
        "element" : "pointer",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "pointer",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    }]
  },
  {
    "name" : "referenceSeq",
    "extends" : "BackboneElement",
    "input" : [{
      "name" : "src",
      "mode" : "source"
    },
    {
      "name" : "tgt",
      "mode" : "target"
    }],
    "rule" : [{
      "name" : "chromosome",
      "source" : [{
        "context" : "src",
        "element" : "chromosome",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "chromosome",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "genomeBuild",
      "source" : [{
        "context" : "src",
        "element" : "genomeBuild",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "genomeBuild",
        "variable" : "vvv",
        "transform" : "create"
      }],
      "dependent" : [{
        "name" : "DefaultMappingGroupAnonymousAlias",
        "parameter" : [{
          "valueId" : "vvv"
        },
        {
          "valueId" : "vvv"
        }]
      }]
    },
    {
      "name" : "referenceSeqId",
      "source" : [{
        "context" : "src",
        "element" : "referenceSeqId",
        "variable" : "vvv"
      }],
      "target" : [{
        "context" : "tgt",
        "element" : "referenceSeqId",
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}