/// url = 'http://hl7.org/fhir/StructureMap/MolecularSequence5to4' /// name = 'MolecularSequence5to4' /// title = 'MolecularSequence Transforms: R5 to R4' /// status = 'active' uses "http://hl7.org/fhir/5.0/MolecularSequence" alias MolecularSequenceR5 as source uses "http://hl7.org/fhir/4.0/MolecularSequence" alias MolecularSequenceR4 as target imports "http://hl7.org/fhir/StructureMap/*5to4" group MolecularSequence(source src : MolecularSequenceR5, target tgt : MolecularSequenceR4) extends DomainResource <<type+>> { src.identifier -> tgt.identifier; src.type as v -> tgt.type = translate(v, 'http://hl7.org/fhir/ConceptMap/MolecularSequence.type-R5toR4', 'code'); src.subject -> tgt.patient; src.specimen -> tgt.specimen; src.device -> tgt.device; src.performer -> tgt.performer; src.relative as s -> tgt.referenceSeq as t then MolecularSequenceReferenceSeq(s, t); src.relative as s -> tgt.variant as t then MolecularSequenceVariant(s, t); } group MolecularSequenceReferenceSeq(source src, target tgt) extends BackboneElement { src.startingSequence as s -> tgt then { s.chromosome as s where code = 'LA21254-0' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '1', tcc.display = 'chromosome 1'; s.chromosome as s where code = 'LA21255-7' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '2', tcc.display = 'chromosome 2'; s.chromosome as s where code = 'LA21256-5' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '3', tcc.display = 'chromosome 3'; s.chromosome as s where code = 'LA21257-3' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '4', tcc.display = 'chromosome 4'; s.chromosome as s where code = 'LA21258-1' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '5', tcc.display = 'chromosome 5'; s.chromosome as s where code = 'LA21259-9' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '6', tcc.display = 'chromosome 6'; s.chromosome as s where code = 'LA21260-7' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '7', tcc.display = 'chromosome 7'; s.chromosome as s where code = 'LA21261-5' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '8', tcc.display = 'chromosome 8'; s.chromosome as s where code = 'LA21262-3' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '9', tcc.display = 'chromosome 9'; s.chromosome as s where code = 'LA21263-1' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '10', tcc.display = 'chromosome 10'; s.chromosome as s where code = 'LA21264-9' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '11', tcc.display = 'chromosome 11'; s.chromosome as s where code = 'LA21265-6' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '12', tcc.display = 'chromosome 12'; s.chromosome as s where code = 'LA21266-4' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '13', tcc.display = 'chromosome 13'; s.chromosome as s where code = 'LA21267-2' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '14', tcc.display = 'chromosome 14'; s.chromosome as s where code = 'LA21268-0' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '15', tcc.display = 'chromosome 15'; s.chromosome as s where code = 'LA21269-8' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '16', tcc.display = 'chromosome 16'; s.chromosome as s where code = 'LA21270-6' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '17', tcc.display = 'chromosome 17'; s.chromosome as s where code = 'LA21271-4' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '18', tcc.display = 'chromosome 18'; s.chromosome as s where code = 'LA21272-2' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '19', tcc.display = 'chromosome 19'; s.chromosome as s where code = 'LA21273-0' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '20', tcc.display = 'chromosome 20'; s.chromosome as s where code = 'LA21274-8' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '21', tcc.display = 'chromosome 21'; s.chromosome as s where code = 'LA21275-5' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '22', tcc.display = 'chromosome 22'; s.chromosome as s where code = 'LA21276-3' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = 'X', tcc.display = 'chromosome X'; s.chromosome as s where code = 'LA21277-1' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = 'Y', tcc.display = 'chromosome Y'; s.sequence : CodeableConcept -> tgt.referenceSeqId; s.sequence : Reference -> tgt.referenceSeqPointer; s.sequence : string -> tgt.referenceSeqString; s.windowStart -> tgt.windowStart; s.windowEnd -> tgt.windowEnd; s.orientation as v -> tgt.orientation = translate(v, '#orientationType', 'code'); s.strand as v -> tgt.strand = translate(v, '#strandType', 'code'); }; } group MolecularSequenceVariant(source src, target tgt) extends BackboneElement { src.edit as s -> tgt then { s.start -> tgt.start; s.end -> tgt.end; s.replacementSequence -> tgt.observedAllele; s.replacedSequence -> tgt.referenceAllele; }; }