FHIR Cross-Version Mapping Pack
0.1.0 - Ballot for Release 5.1.0
FHIR Cross-Version Mapping Pack
0.1.0 - Ballot for Release 5.1.0
FHIR Cross-Version Mapping Pack, published by HL7 International / FHIR Infrastructure. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-cross-version/ and changes regularly. See the Directory of published versions
| Page standards status: Draft | Maturity Level: 1 |
<StructureMap xmlns="http://hl7.org/fhir">
<id value="Sequence3to4"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><pre class="fml">
<span style="color: #cc00cc">/// <b>url</b> = </span><span style="color: blue">'http://hl7.org/fhir/StructureMap/Sequence3to4'</span>
<span style="color: #cc00cc">/// <b>name</b> = </span><span style="color: blue">'Sequence3to4'</span>
<span style="color: #cc00cc">/// <b>title</b> = </span><span style="color: blue">'Sequence Transforms: R3 to R4'</span>
<span style="color: #cc00cc">/// <b>status</b> = </span><span style="color: blue">'active'</span>
<b>uses</b><span style="color: navy"> "</span>http://hl7.org/fhir/3.0/Sequence<span style="color: navy">" </span><b>alias </b>SequenceR3 <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span>http://hl7.org/fhir/4.0/MolecularSequence<span style="color: navy">" </span><b>alias </b>MolecularSequence <b>as </b><b>target</b>
<b>imports</b><span style="color: navy"> "</span>http://hl7.org/fhir/StructureMap/*3to4<span style="color: navy">"
</span>
<b>group </b>Sequence<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>SequenceR3, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy"> : </span>MolecularSequence<span style="color: navy">)</span><b> extends </b>DomainResource<b> <<type+>></b><span style="color: navy"> {
</span> src.identifier<span style="color: navy"><b> -> </b></span>tgt.identifier<span style="color: navy">;</span>
src.type<span style="color: navy"><b> -> </b></span>tgt.type<span style="color: navy">;</span>
src.coordinateSystem<span style="color: navy"><b> -> </b></span>tgt.coordinateSystem<span style="color: navy">;</span>
src.patient<span style="color: navy"><b> -> </b></span>tgt.patient<span style="color: navy">;</span>
src.specimen<span style="color: navy"><b> -> </b></span>tgt.specimen<span style="color: navy">;</span>
src.device<span style="color: navy"><b> -> </b></span>tgt.device<span style="color: navy">;</span>
src.performer<span style="color: navy"><b> -> </b></span>tgt.performer<span style="color: navy">;</span>
src.quantity<span style="color: navy"><b> -> </b></span>tgt.quantity<span style="color: navy">;</span>
src.referenceSeq<b> as </b><span style="color: maroon">vs0</span><span style="color: navy"><b> -> </b></span>tgt.referenceSeq<b> as </b><span style="color: maroon">vt0</span><b> then </b>referenceSeq<span style="color: navy">(</span><span style="color: maroon">vs0</span><span style="color: navy">, </span><span style="color: maroon">vt0</span><span style="color: navy">)</span><span style="color: navy">;</span>
src.variant<b> as </b><span style="color: maroon">vs0</span><span style="color: navy"><b> -> </b></span>tgt.variant<b> as </b><span style="color: maroon">vt0</span><b> then </b>variant<span style="color: navy">(</span><span style="color: maroon">vs0</span><span style="color: navy">, </span><span style="color: maroon">vt0</span><span style="color: navy">)</span><span style="color: navy">;</span>
src.observedSeq<span style="color: navy"><b> -> </b></span>tgt.observedSeq<span style="color: navy">;</span>
src.quality<b> as </b><span style="color: maroon">vs0</span><span style="color: navy"><b> -> </b></span>tgt.quality<b> as </b><span style="color: maroon">vt0</span><b> then </b>quality<span style="color: navy">(</span><span style="color: maroon">vs0</span><span style="color: navy">, </span><span style="color: maroon">vt0</span><span style="color: navy">)</span><span style="color: navy">;</span>
src.readCoverage<span style="color: navy"><b> -> </b></span>tgt.readCoverage<span style="color: navy">;</span>
src.repository<b> as </b><span style="color: maroon">vs0</span><span style="color: navy"><b> -> </b></span>tgt.repository<b> as </b><span style="color: maroon">vt0</span><b> then </b>repository<span style="color: navy">(</span><span style="color: maroon">vs0</span><span style="color: navy">, </span><span style="color: maroon">vt0</span><span style="color: navy">)</span><span style="color: navy">;</span>
src.pointer<span style="color: navy"><b> -> </b></span>tgt.pointer<span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>referenceSeq<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span>, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy">)</span><b> extends </b>BackboneElement<span style="color: navy"> {
</span> src.chromosome<span style="color: navy"><b> -> </b></span>tgt.chromosome<span style="color: navy">;</span>
src.genomeBuild<span style="color: navy"><b> -> </b></span>tgt.genomeBuild<span style="color: navy">;</span>
src.referenceSeqId<span style="color: navy"><b> -> </b></span>tgt.referenceSeqId<span style="color: navy">;</span>
src.referenceSeqPointer<span style="color: navy"><b> -> </b></span>tgt.referenceSeqPointer<span style="color: navy">;</span>
src.referenceSeqString<span style="color: navy"><b> -> </b></span>tgt.referenceSeqString<span style="color: navy">;</span>
src.strand<b> where </b>value = 1<span style="color: navy"><b> -> </b></span>tgt.strand = <span style="color: blue">'watson'</span><span style="color: navy">;</span>
src.strand<b> where </b>value = ( - 1)<span style="color: navy"><b> -> </b></span>tgt.strand = <span style="color: blue">'crick'</span><span style="color: navy">;</span>
src.windowStart<span style="color: navy"><b> -> </b></span>tgt.windowStart<span style="color: navy">;</span>
src.windowEnd<span style="color: navy"><b> -> </b></span>tgt.windowEnd<span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>variant<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span>, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy">)</span><b> extends </b>BackboneElement<span style="color: navy"> {
</span> src.start<span style="color: navy"><b> -> </b></span>tgt.start<span style="color: navy">;</span>
src.end<span style="color: navy"><b> -> </b></span>tgt.end<span style="color: navy">;</span>
src.observedAllele<span style="color: navy"><b> -> </b></span>tgt.observedAllele<span style="color: navy">;</span>
src.referenceAllele<span style="color: navy"><b> -> </b></span>tgt.referenceAllele<span style="color: navy">;</span>
src.cigar<span style="color: navy"><b> -> </b></span>tgt.cigar<span style="color: navy">;</span>
src.variantPointer<span style="color: navy"><b> -> </b></span>tgt.variantPointer<span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>quality<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span>, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy">)</span><b> extends </b>BackboneElement<span style="color: navy"> {
</span> src.type<span style="color: navy"><b> -> </b></span>tgt.type<span style="color: navy">;</span>
src.standardSequence<span style="color: navy"><b> -> </b></span>tgt.standardSequence<span style="color: navy">;</span>
src.start<span style="color: navy"><b> -> </b></span>tgt.start<span style="color: navy">;</span>
src.end<span style="color: navy"><b> -> </b></span>tgt.end<span style="color: navy">;</span>
src.score<span style="color: navy"><b> -> </b></span>tgt.score<span style="color: navy">;</span>
src.method<span style="color: navy"><b> -> </b></span>tgt.method<span style="color: navy">;</span>
src.truthTP<span style="color: navy"><b> -> </b></span>tgt.truthTP<span style="color: navy">;</span>
src.queryTP<span style="color: navy"><b> -> </b></span>tgt.queryTP<span style="color: navy">;</span>
src.truthFN<span style="color: navy"><b> -> </b></span>tgt.truthFN<span style="color: navy">;</span>
src.queryFP<span style="color: navy"><b> -> </b></span>tgt.queryFP<span style="color: navy">;</span>
src.gtFP<span style="color: navy"><b> -> </b></span>tgt.gtFP<span style="color: navy">;</span>
src.precision<span style="color: navy"><b> -> </b></span>tgt.precision<span style="color: navy">;</span>
src.recall<span style="color: navy"><b> -> </b></span>tgt.recall<span style="color: navy">;</span>
src.fScore<span style="color: navy"><b> -> </b></span>tgt.fScore<span style="color: navy">;</span>
<span style="color: navy">}
</span><b>group </b>repository<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span>, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy">)</span><b> extends </b>BackboneElement<span style="color: navy"> {
</span> src.type<span style="color: navy"><b> -> </b></span>tgt.type<span style="color: navy">;</span>
src.url<span style="color: navy"><b> -> </b></span>tgt.url<span style="color: navy">;</span>
src.name<span style="color: navy"><b> -> </b></span>tgt.name<span style="color: navy">;</span>
src.datasetId<span style="color: navy"><b> -> </b></span>tgt.datasetId<span style="color: navy">;</span>
src.variantsetId<span style="color: navy"><b> -> </b></span>tgt.variantsetId<span style="color: navy">;</span>
src.readsetId<span style="color: navy"><b> -> </b></span>tgt.readsetId<span style="color: navy">;</span>
<span style="color: navy">}
</span></pre></div>
</text>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="fhir"/>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
<valueInteger value="1">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.xver"/>
</extension>
</valueInteger>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
<valueCode value="draft">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.xver"/>
</extension>
</valueCode>
</extension>
<url value="http://hl7.org/fhir/StructureMap/Sequence3to4"/>
<version value="0.1.0"/>
<name value="Sequence3to4"/>
<title value="Sequence Transforms: R3 to R4"/>
<status value="active"/>
<date value="2024-02-22T03:16:50+00:00"/>
<publisher value="HL7 International / FHIR Infrastructure"/>
<contact>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/fiwg"/>
</telecom>
</contact>
<description value="SequenceTransformsR3toR4"/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
</coding>
</jurisdiction>
<structure>
<url value="http://hl7.org/fhir/3.0/Sequence"/>
<mode value="source"/>
<alias value="SequenceR3"/>
</structure>
<structure>
<url value="http://hl7.org/fhir/4.0/MolecularSequence"/>
<mode value="target"/>
<alias value="MolecularSequence"/>
</structure>
<import value="http://hl7.org/fhir/StructureMap/*3to4"/>
<group>
<name value="Sequence"/>
<extends value="DomainResource"/>
<typeMode value="type-and-types"/>
<input>
<name value="src"/>
<type value="SequenceR3"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<type value="MolecularSequence"/>
<mode value="target"/>
</input>
<rule>
<name value="identifier"/>
<source>
<context value="src"/>
<element value="identifier"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="identifier"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="type"/>
<source>
<context value="src"/>
<element value="type"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="type"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="coordinateSystem"/>
<source>
<context value="src"/>
<element value="coordinateSystem"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="coordinateSystem"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="patient"/>
<source>
<context value="src"/>
<element value="patient"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="patient"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="specimen"/>
<source>
<context value="src"/>
<element value="specimen"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="specimen"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="device"/>
<source>
<context value="src"/>
<element value="device"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="device"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="performer"/>
<source>
<context value="src"/>
<element value="performer"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="performer"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="quantity"/>
<source>
<context value="src"/>
<element value="quantity"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="quantity"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="referenceSeq"/>
<source>
<context value="src"/>
<element value="referenceSeq"/>
<variable value="vs0"/>
</source>
<target>
<context value="tgt"/>
<element value="referenceSeq"/>
<variable value="vt0"/>
</target>
<dependent>
<name value="referenceSeq"/>
<parameter>
<valueId value="vs0"/>
</parameter>
<parameter>
<valueId value="vt0"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="variant"/>
<source>
<context value="src"/>
<element value="variant"/>
<variable value="vs0"/>
</source>
<target>
<context value="tgt"/>
<element value="variant"/>
<variable value="vt0"/>
</target>
<dependent>
<name value="variant"/>
<parameter>
<valueId value="vs0"/>
</parameter>
<parameter>
<valueId value="vt0"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="observedSeq"/>
<source>
<context value="src"/>
<element value="observedSeq"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="observedSeq"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="quality"/>
<source>
<context value="src"/>
<element value="quality"/>
<variable value="vs0"/>
</source>
<target>
<context value="tgt"/>
<element value="quality"/>
<variable value="vt0"/>
</target>
<dependent>
<name value="quality"/>
<parameter>
<valueId value="vs0"/>
</parameter>
<parameter>
<valueId value="vt0"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="readCoverage"/>
<source>
<context value="src"/>
<element value="readCoverage"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="readCoverage"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="repository"/>
<source>
<context value="src"/>
<element value="repository"/>
<variable value="vs0"/>
</source>
<target>
<context value="tgt"/>
<element value="repository"/>
<variable value="vt0"/>
</target>
<dependent>
<name value="repository"/>
<parameter>
<valueId value="vs0"/>
</parameter>
<parameter>
<valueId value="vt0"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="pointer"/>
<source>
<context value="src"/>
<element value="pointer"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="pointer"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
</group>
<group>
<name value="referenceSeq"/>
<extends value="BackboneElement"/>
<input>
<name value="src"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<mode value="target"/>
</input>
<rule>
<name value="chromosome"/>
<source>
<context value="src"/>
<element value="chromosome"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="chromosome"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="genomeBuild"/>
<source>
<context value="src"/>
<element value="genomeBuild"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="genomeBuild"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="referenceSeqId"/>
<source>
<context value="src"/>
<element value="referenceSeqId"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="referenceSeqId"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="referenceSeqPointer"/>
<source>
<context value="src"/>
<element value="referenceSeqPointer"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="referenceSeqPointer"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="referenceSeqString"/>
<source>
<context value="src"/>
<element value="referenceSeqString"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="referenceSeqString"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="strand"/>
<source>
<context value="src"/>
<element value="strand"/>
<condition value="value = 1"/>
</source>
<target>
<context value="tgt"/>
<element value="strand"/>
<transform value="copy"/>
<parameter>
<valueString value="watson"/>
</parameter>
</target>
</rule>
<rule>
<name value="strand"/>
<source>
<context value="src"/>
<element value="strand"/>
<condition value="value = ( - 1)"/>
</source>
<target>
<context value="tgt"/>
<element value="strand"/>
<transform value="copy"/>
<parameter>
<valueString value="crick"/>
</parameter>
</target>
</rule>
<rule>
<name value="windowStart"/>
<source>
<context value="src"/>
<element value="windowStart"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="windowStart"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="windowEnd"/>
<source>
<context value="src"/>
<element value="windowEnd"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="windowEnd"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
</group>
<group>
<name value="variant"/>
<extends value="BackboneElement"/>
<input>
<name value="src"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<mode value="target"/>
</input>
<rule>
<name value="start"/>
<source>
<context value="src"/>
<element value="start"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="start"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="end"/>
<source>
<context value="src"/>
<element value="end"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="end"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="observedAllele"/>
<source>
<context value="src"/>
<element value="observedAllele"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="observedAllele"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="referenceAllele"/>
<source>
<context value="src"/>
<element value="referenceAllele"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="referenceAllele"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="cigar"/>
<source>
<context value="src"/>
<element value="cigar"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="cigar"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="variantPointer"/>
<source>
<context value="src"/>
<element value="variantPointer"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="variantPointer"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
</group>
<group>
<name value="quality"/>
<extends value="BackboneElement"/>
<input>
<name value="src"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<mode value="target"/>
</input>
<rule>
<name value="type"/>
<source>
<context value="src"/>
<element value="type"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="type"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="standardSequence"/>
<source>
<context value="src"/>
<element value="standardSequence"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="standardSequence"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="start"/>
<source>
<context value="src"/>
<element value="start"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="start"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="end"/>
<source>
<context value="src"/>
<element value="end"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="end"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="score"/>
<source>
<context value="src"/>
<element value="score"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="score"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="method"/>
<source>
<context value="src"/>
<element value="method"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="method"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="truthTP"/>
<source>
<context value="src"/>
<element value="truthTP"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="truthTP"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="queryTP"/>
<source>
<context value="src"/>
<element value="queryTP"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="queryTP"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="truthFN"/>
<source>
<context value="src"/>
<element value="truthFN"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="truthFN"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="queryFP"/>
<source>
<context value="src"/>
<element value="queryFP"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="queryFP"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="gtFP"/>
<source>
<context value="src"/>
<element value="gtFP"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="gtFP"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="precision"/>
<source>
<context value="src"/>
<element value="precision"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="precision"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="recall"/>
<source>
<context value="src"/>
<element value="recall"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="recall"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="fScore"/>
<source>
<context value="src"/>
<element value="fScore"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="fScore"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
</group>
<group>
<name value="repository"/>
<extends value="BackboneElement"/>
<input>
<name value="src"/>
<mode value="source"/>
</input>
<input>
<name value="tgt"/>
<mode value="target"/>
</input>
<rule>
<name value="type"/>
<source>
<context value="src"/>
<element value="type"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="type"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="url"/>
<source>
<context value="src"/>
<element value="url"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="url"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="name"/>
<source>
<context value="src"/>
<element value="name"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="name"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="datasetId"/>
<source>
<context value="src"/>
<element value="datasetId"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="datasetId"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="variantsetId"/>
<source>
<context value="src"/>
<element value="variantsetId"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="variantsetId"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
<rule>
<name value="readsetId"/>
<source>
<context value="src"/>
<element value="readsetId"/>
<variable value="vvv"/>
</source>
<target>
<context value="tgt"/>
<element value="readsetId"/>
<variable value="vvv"/>
<transform value="create"/>
</target>
<dependent>
<name value="DefaultMappingGroupAnonymousAlias"/>
<parameter>
<valueId value="vvv"/>
</parameter>
<parameter>
<valueId value="vvv"/>
</parameter>
</dependent>
</rule>
</group>
</StructureMap>
IG © 2022+ HL7 International / FHIR Infrastructure. Package hl7.fhir.uv.xver#0.1.0 based on FHIR 5.0.0. Generated 2024-02-22
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