FHIR Cross-Version Mapping Pack
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FHIR Cross-Version Mapping Pack, published by HL7 International / FHIR Infrastructure. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-cross-version/ and changes regularly. See the Directory of published versions

: MolecularSequence Transforms: R5 to R4 - JSON Representation

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{
  "resourceType" : "StructureMap",
  "id" : "MolecularSequence5to4",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/StructureMap/MolecularSequence5to4'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'MolecularSequence5to4'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'MolecularSequence Transforms: R5 to R4'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'active'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span>http://hl7.org/fhir/5.0/MolecularSequence<span style=\"color: navy\">&quot; </span><b>alias </b>MolecularSequenceR5 <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span>http://hl7.org/fhir/4.0/MolecularSequence<span style=\"color: navy\">&quot; </span><b>alias </b>MolecularSequenceR4 <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> &quot;</span>http://hl7.org/fhir/StructureMap/*5to4<span style=\"color: navy\">&quot;\r\n</span>\r\n<b>group </b>MolecularSequence<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>MolecularSequenceR5, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>MolecularSequenceR4<span style=\"color: navy\">)</span><b> extends </b>DomainResource<b> &lt;&lt;type+&gt;&gt;</b><span style=\"color: navy\"> {\r\n</span>  src.identifier<span style=\"color: navy\"><b> -&gt; </b></span>tgt.identifier<span style=\"color: navy\">;</span>\r\n  src.type<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.type = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://hl7.org/fhir/ConceptMap/MolecularSequence.type-R5toR4'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.subject<span style=\"color: navy\"><b> -&gt; </b></span>tgt.patient<span style=\"color: navy\">;</span>\r\n  src.specimen<span style=\"color: navy\"><b> -&gt; </b></span>tgt.specimen<span style=\"color: navy\">;</span>\r\n  src.device<span style=\"color: navy\"><b> -&gt; </b></span>tgt.device<span style=\"color: navy\">;</span>\r\n  src.performer<span style=\"color: navy\"><b> -&gt; </b></span>tgt.performer<span style=\"color: navy\">;</span>\r\n  src.relative<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceSeq<b> as </b><span style=\"color: maroon\">t</span><b> then </b>MolecularSequenceReferenceSeq<span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">t</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  src.relative<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.variant<b> as </b><span style=\"color: maroon\">t</span><b> then </b>MolecularSequenceVariant<span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">t</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>MolecularSequenceReferenceSeq<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.startingSequence<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21254-0'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'1'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 1'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21255-7'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'2'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 2'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21256-5'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'3'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 3'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21257-3'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'4'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 4'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21258-1'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'5'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 5'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21259-9'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'6'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 6'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21260-7'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'7'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 7'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21261-5'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'8'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 8'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21262-3'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'9'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 9'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21263-1'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'10'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 10'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21264-9'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'11'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 11'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21265-6'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'12'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 12'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21266-4'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'13'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 13'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21267-2'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'14'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 14'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21268-0'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'15'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 15'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21269-8'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'16'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 16'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21270-6'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'17'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 17'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21271-4'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'18'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 18'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21272-2'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'19'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 19'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21273-0'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'20'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 20'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21274-8'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'21'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 21'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21275-5'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'22'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 22'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21276-3'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'X'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome X'</span><span style=\"color: navy\">;</span>\r\n    s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21277-1'<span style=\"color: navy\"><b> -&gt; </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'Y'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome Y'</span><span style=\"color: navy\">;</span>\r\n    s.sequence<span style=\"color: navy\"> : </span>CodeableConcept<span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceSeqId<span style=\"color: navy\">;</span>\r\n    s.sequence<span style=\"color: navy\"> : </span>Reference<span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceSeqPointer<span style=\"color: navy\">;</span>\r\n    s.sequence<span style=\"color: navy\"> : </span>string<span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceSeqString<span style=\"color: navy\">;</span>\r\n    s.windowStart<span style=\"color: navy\"><b> -&gt; </b></span>tgt.windowStart<span style=\"color: navy\">;</span>\r\n    s.windowEnd<span style=\"color: navy\"><b> -&gt; </b></span>tgt.windowEnd<span style=\"color: navy\">;</span>\r\n    s.orientation<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.orientation = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'#orientationType'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n    s.strand<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.strand = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'#strandType'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>MolecularSequenceVariant<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span>  src.edit<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    s.start<span style=\"color: navy\"><b> -&gt; </b></span>tgt.start<span style=\"color: navy\">;</span>\r\n    s.end<span style=\"color: navy\"><b> -&gt; </b></span>tgt.end<span style=\"color: navy\">;</span>\r\n    s.replacementSequence<span style=\"color: navy\"><b> -&gt; </b></span>tgt.observedAllele<span style=\"color: navy\">;</span>\r\n    s.replacedSequence<span style=\"color: navy\"><b> -&gt; </b></span>tgt.referenceAllele<span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode" : "fhir"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
      "valueInteger" : 1,
      "_valueInteger" : {
        "extension" : [
          {
            "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical" : "http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.xver"
          }
        ]
      }
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode" : "draft",
      "_valueCode" : {
        "extension" : [
          {
            "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical" : "http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.xver"
          }
        ]
      }
    }
  ],
  "url" : "http://hl7.org/fhir/StructureMap/MolecularSequence5to4",
  "version" : "0.1.0",
  "name" : "MolecularSequence5to4",
  "title" : "MolecularSequence Transforms: R5 to R4",
  "status" : "active",
  "date" : "2024-02-22T03:16:50+00:00",
  "publisher" : "HL7 International / FHIR Infrastructure",
  "contact" : [
    {
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://www.hl7.org/Special/committees/fiwg"
        }
      ]
    }
  ],
  "description" : "MolecularSequenceTransformsR5toR4",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code" : "001"
        }
      ]
    }
  ],
  "structure" : [
    {
      "url" : "http://hl7.org/fhir/5.0/MolecularSequence",
      "mode" : "source",
      "alias" : "MolecularSequenceR5"
    },
    {
      "url" : "http://hl7.org/fhir/4.0/MolecularSequence",
      "mode" : "target",
      "alias" : "MolecularSequenceR4"
    }
  ],
  "import" : [
    "http://hl7.org/fhir/StructureMap/*5to4"
  ],
  "group" : [
    {
      "name" : "MolecularSequence",
      "extends" : "DomainResource",
      "typeMode" : "type-and-types",
      "input" : [
        {
          "name" : "src",
          "type" : "MolecularSequenceR5",
          "mode" : "source"
        },
        {
          "name" : "tgt",
          "type" : "MolecularSequenceR4",
          "mode" : "target"
        }
      ],
      "rule" : [
        {
          "name" : "identifier",
          "source" : [
            {
              "context" : "src",
              "element" : "identifier",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "identifier",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "type",
          "source" : [
            {
              "context" : "src",
              "element" : "type",
              "variable" : "v"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "type",
              "transform" : "translate",
              "parameter" : [
                {
                  "valueId" : "v"
                },
                {
                  "valueString" : "http://hl7.org/fhir/ConceptMap/MolecularSequence.type-R5toR4"
                },
                {
                  "valueString" : "code"
                }
              ]
            }
          ]
        },
        {
          "name" : "subject",
          "source" : [
            {
              "context" : "src",
              "element" : "subject",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "patient",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "specimen",
          "source" : [
            {
              "context" : "src",
              "element" : "specimen",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "specimen",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "device",
          "source" : [
            {
              "context" : "src",
              "element" : "device",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "device",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "performer",
          "source" : [
            {
              "context" : "src",
              "element" : "performer",
              "variable" : "vvv"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "performer",
              "variable" : "vvv",
              "transform" : "create"
            }
          ],
          "dependent" : [
            {
              "name" : "DefaultMappingGroupAnonymousAlias",
              "parameter" : [
                {
                  "valueId" : "vvv"
                },
                {
                  "valueId" : "vvv"
                }
              ]
            }
          ]
        },
        {
          "name" : "relative",
          "source" : [
            {
              "context" : "src",
              "element" : "relative",
              "variable" : "s"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "referenceSeq",
              "variable" : "t"
            }
          ],
          "dependent" : [
            {
              "name" : "MolecularSequenceReferenceSeq",
              "parameter" : [
                {
                  "valueId" : "s"
                },
                {
                  "valueId" : "t"
                }
              ]
            }
          ]
        },
        {
          "name" : "relative",
          "source" : [
            {
              "context" : "src",
              "element" : "relative",
              "variable" : "s"
            }
          ],
          "target" : [
            {
              "context" : "tgt",
              "element" : "variant",
              "variable" : "t"
            }
          ],
          "dependent" : [
            {
              "name" : "MolecularSequenceVariant",
              "parameter" : [
                {
                  "valueId" : "s"
                },
                {
                  "valueId" : "t"
                }
              ]
            }
          ]
        }
      ]
    },
    {
      "name" : "MolecularSequenceReferenceSeq",
      "extends" : "BackboneElement",
      "input" : [
        {
          "name" : "src",
          "mode" : "source"
        },
        {
          "name" : "tgt",
          "mode" : "target"
        }
      ],
      "rule" : [
        {
          "name" : "startingSequence",
          "source" : [
            {
              "context" : "src",
              "element" : "startingSequence",
              "variable" : "s"
            }
          ],
          "target" : [
            {
              "transform" : "copy",
              "parameter" : [
                {
                  "valueId" : "tgt"
                }
              ]
            }
          ],
          "rule" : [
            {
              "name" : "chromosome",
              "source" : [
                {
                  "context" : "s",
                  "element" : "chromosome",
                  "variable" : "s",
                  "condition" : "code = 'LA21254-0'"
                }
              ],
              "target" : [
                {
                  "context" : "tgt",
                  "element" : "chromosome",
                  "variable" : "tc",
                  "transform" : "create",
                  "parameter" : [
                    {
                      "valueString" : "CodeableConcept"
                    }
                  ]
                },
                {
                  "context" : "tc",
                  "element" : "coding",
                  "variable" : "tcc",
                  "transform" : "create",
                  "parameter" : [
                    {
                      "valueString" : "Coding"
                    }
                  ]
                },
                {
                  "context" : "tcc",
                  "element" : "system",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueString" : "http://terminology.hl7.org/CodeSystem/chromosome-human"
                    }
                  ]
                },
                {
                  "context" : "tcc",
                  "element" : "code",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueString" : "1"
                    }
                  ]
                },
                {
                  "context" : "tcc",
                  "element" : "display",
                  "transform" : "copy",
                  "parameter" : [
                    {
                      "valueString" : "chromosome 1"
                    }
                  ]
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                  ]
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                    {
                      "valueString" : "chromosome 18"
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                      "valueString" : "21"
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                      "valueString" : "chromosome 21"
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                      "valueString" : "22"
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                      "valueString" : "X"
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                      "valueString" : "chromosome X"
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                    {
                      "valueString" : "Y"
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                  "parameter" : [
                    {
                      "valueString" : "chromosome Y"
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                  "type" : "CodeableConcept",
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              "name" : "strand",
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    {
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                    {
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}