Validation Results for COVID19FHIRProfileLibraryIG

Generated Mon Jul 25 12:35:17 UTC 2022, FHIR version 4.0.1 for hl7.fhir.us.covid19library#1.0.0 (canonical = http://hl7.org/fhir/us/covid19library (history)). See Errors Only

Quality Checks
Publisher Version:IG Publisher Version: v1.1.126
Publication Code:covid19library . PackageId = hl7.fhir.us.covid19library, Canonical = http://hl7.org/fhir/us/covid19library
Realm Check for US:

Snomed: The IG specifies the US edition of SNOMED CT ✓

24 Profiles not based on US Core

Version Check:1.0.0 = ok. Step informative in sequence Informative, to be published at http://hl7.org/fhir/us/covid19library/informative1 (subdir = informative1)
Supressed Messages:11 Suppressed Issues
Dependency Checks:
PackageVersionFHIR ReleaseCanonicalWeb BaseComment
.. hl7.fhir.us.covid19library1.0.04.0.1http://hl7.org/fhir/us/covid19library
... hl7.terminology.r43.1.0 M4.0.1http://terminology.hl7.orghttp://terminology.hl7.org/3.1.0
... hl7.fhir.us.core3.1.0 O4.0.1http://hl7.org/fhir/us/corehttp://hl7.org/fhir/us/core/STU3.1
Templates: hl7.fhir.template#0.3.2 -> hl7.base.template#0.3.2 -> fhir.base.template#0.2.2
Dependent IGs:no references
Publication Rules:Code = covid19library. All OK (path - http://hl7.org/fhir/us/covid19library/informative1)

The copyrightYear parameter ('2021+') in the IG resource is good
HTA Analysis:All OK
R5 Dependencies:(none)
Previous Version Comparison: Comparison with version 0.14.0
IPA Comparison: n/a
Summary: errors = 1, warn = 0, info = 0, broken links = 0
FilenameErrorsWarningsHints
Build Errors000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/CodeSystem-covid19-lab-values-cs000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/CodeSystem-covid19-underlying-condition-category-cs000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19GastrointestinalHepaticUnderlyingMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19HemoglobinopathyUnderlyingMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19ImmuneUnderlyingMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19RenalUnderlyingMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19RespiratoryUnderlyingMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19UncategorizedUnderlyingMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19UnderlyingCardiovascularMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19UnderlyingImmunocompromisedMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19UnderlyingMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19UnderlyingMetabolicMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-COVID19UnderlyingNeuroligicMedicalConditionExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-ICD10Diagnosis000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Condition-SNOMEDDiagnosis000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Immunization-COVID19ImmunizationExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/ImplementationGuide-hl7.fhir.us.covid19library000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-COVID19SignsSymptomsExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-COVID19UnderlyingConditionObservationExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-CaseReportIdExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-FluABSARSCoV2PnlRespNAAprbExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-FluABSARSCoV2RespNAAprobeExample000
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/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-RSVRNAPrThrPtRespiratoryOrdProbeAmpRTarExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-SARCCoV2AbIgGPrThrPtBldDotOrsdIAExample000
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/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-SARSCoV2stimgammaintfTcellsSpikeAgsptcntbkgrndNumPtBldQnExample000
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/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-SARSCoV2wholegenomeSeqPtIsolateNomSequencingExample000
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/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-SARSLikecoronavirusNGenePrThrPtXXXOrdPrbAmpTarLabObsExample000
/scratch/ig-build-temp-2E0DEJ/repo/fsh-generated/resources/Observation-SARSLikecoronavirusNGeneThreshNumPtXXXQnPrbAmpTarLabObsExample000
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fsh-generated/resources/Condition-COVID19GastrointestinalHepaticUnderlyingMedicalConditionExample.json Show Validation Information (1)

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fsh-generated/resources/Condition-COVID19HemoglobinopathyUnderlyingMedicalConditionExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-COVID19SignsSymptomsExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-CaseReportIdExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-FluABSARSCoV2PnlRespNAAprbExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-FluAFluBSARSCoV2AgpanelPtRespiratoryupperIArapidExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-FluAandBandSARSCoV2andRSVRNApanelPtRespProbeamptarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-FluAvRNARespQlNaaProbeExample.json Show Validation Information (6)

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fsh-generated/resources/Observation-FluBvRNARespAlNAAProbeExample.json Show Validation Information (6)

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fsh-generated/resources/Observation-GISAIDSequenceAccessionNumberExample.json Show Validation Information (10)

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fsh-generated/resources/Observation-GammaInterferonBackgroundACncPtBldQnIAExample.json Show Validation Information (7)

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fsh-generated/resources/Observation-GestationalAgeAtOnsetOfIllnessExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-Humancoronavirus229EHKU1OC43NL63RNAPresNsphLabObsExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-InfluenzavirusAAgPrThePtNphOrdIArapidExample.json Show Validation Information (5)

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fsh-generated/resources/Observation-InfluenzavirusBAgPrThrPtNphOrdIArapidExample.json Show Validation Information (5)

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fsh-generated/resources/Observation-KnownSARSCoV2ExposureExample.json Show Validation Information (1)

PathSeverityMessage
Observation.extension[0].value.ofType(CodeableConcept).coding[0] (l22/c12)errorThe code "LA30835-5" is not valid in the system http://loinc.org; The code provided (http://loinc.org#LA30835-5) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://loinc.org#LA30835-5'

fsh-generated/resources/Observation-MitogenStimGammaIntfrnCrctdForBckgrndACncPtBldQnExample.json Show Validation Information (7)

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fsh-generated/resources/Observation-MitogenStimulatedGammaInterferonACncPtBldQnExample.json Show Validation Information (7)

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fsh-generated/resources/Observation-PercentNeutSARSCoV2spikeprtRBDAbneutAFrPtSerPlasQnIAExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-PregnancyStatusExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-RSVRNAPrThrPtRespiratoryOrdProbeAmpRTarExample.json Show Validation Information (5)

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fsh-generated/resources/Observation-SARCCoV2AbIgGPrThrPtBldDotOrsdIAExample.json Show Validation Information (4)

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fsh-generated/resources/Observation-SARSCoV2AgRespQlIArapidLabObsExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2EgenePrThrPtRespOrdProbAmpTarExample.json Show Validation Information (16)

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fsh-generated/resources/Observation-SARSCoV2EgenePrThrPtSerPlasOrdProbAmpTarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2MgenePrThrPtRespUpperOrdProbeamptarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2NgenePrThrPtSalivaOrdPATCDCN1Example.json Show Validation Information (7)

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fsh-generated/resources/Observation-SARSCoV2NgeneThreshNumPtOPwashQnProbeamptarExample.json Show Validation Information (5)

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fsh-generated/resources/Observation-SARSCoV2Nsp2genePrThrPtRespUpperOrdProbeamptarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2ORF1abRespQlNAAprobeLabObsExample.json Show Validation Information (16)

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fsh-generated/resources/Observation-SARSCoV2ORF1abregionACncPtRespUpperQnProbeamptarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2ORF1abregionPrNumPtOropharyngealwashQnProbeamptarExample.json Show Validation Information (5)

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fsh-generated/resources/Observation-SARSCoV2PrThrPtXXXOrdOrganismSpecificCultureExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2RNACycleThresholdRespQnNAAProbAmpTarExample.json Show Validation Information (16)

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fsh-generated/resources/Observation-SARSCoV2RNALnCncPtXXXQnProbAmpTarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2RNAPnlXXXNAAprobePanelLabObsExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2RNAPrThrPtSalivaOrdProbAmpTarExample.json Show Validation Information (8)

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fsh-generated/resources/Observation-SARSCoV2RNAPrThrPtSalivaOrdSequencingExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2RNAThreshNumPtXXXQnProbAmpTarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2RdRpgenePrThrPtRespiratorylowerOrdProbeamptarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2RdRpgenemutndetPridPtXXXNomMolgenExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2andSARSrltdcovRNApanelPtRespProbeamptarExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2nuccpsdptnAbIgGPrThrPtSerPlasOrdIAExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2specificTCRBgenererngmtsPrThrPtBldOrdSequencingExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2spikeproteinRBDAbneutPrThrPtSerPlasOrdIAExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2spkptnRBDAbneutTitrPtSerPlasQnIAExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSCoV2wholegenomeSeqPtIsolateNomSequencingExample.json Show Validation Information (10)

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fsh-generated/resources/Observation-SARSCoronavirusPlusSARSCoV2AgPrThrPtRespOrdIARapidExample.json Show Validation Information (4)

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fsh-generated/resources/Observation-SARSLikecoronavirusNGenePrThrPtXXXOrdPrbAmpTarLabObsExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSRelatedCoronavirusRNAPrThrPtRespOrdPrbAmpTarLabObsExample.json Show Validation Information (16)

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fsh-generated/resources/Observation-SARScoronavirus2AbImpPtSerPlasNomLabObsExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARScoronavirus2ORF1abregionPrThrPtSalivaOrdProbeamptarExample.json Show Validation Information (8)

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fsh-generated/resources/Observation-SARScoronavirus2RNAPanelPtRespPrbAmpTarLabObsExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARScoronavirus2RNAPrThrPtOropharyngealwashOrdProbeamptarExample.json Show Validation Information (5)

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fsh-generated/resources/Observation-SARScoronavirus2RNAPrThrPtRespiratoryOrdSequencingExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARScoronavirus2RdRpGenePrThePtRespOrdPrbAmpTarLabObsExample.json Show Validation Information (16)

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fsh-generated/resources/Observation-SARScoronavirus2SgenePrThrPtRespiratoryOrdSequencingExample.json Show Validation Information (1)

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fsh-generated/resources/Observation-SARSrelatedCoVPlusMERSCoVRNAPrThrPtRespOrdPrbAmpTarLabObsExample.json Show Validation Information (1)

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fsh-generated/resources/StructureDefinition-SARS-CoV2-Ab-Imp-pt-serplas-nom-LabObs.json Show Validation Information (1)

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fsh-generated/resources/StructureDefinition-SARSCoV2NgenePrThrPtSalivaOrdProbeamptarCDCprimerprobesetN1.json Show Validation Information (1)

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Suppressed Messages (Warnings, hints, broken links)

A code system is provided for this code, http://hl7.org/fhir/sid/cvx.

From David Baorto at Regenstrief (April 27, 2022): "At the time, the list LL5552-6 was not associated with any LOINC, hence it was not in the release. From prior communication with Swapna, I found that "...list was supposed to be attached to 88636-6 in the context of 94654-1 Known exposure panel..." We now created that attachment, so the list should appear in the next LOINC release."

The US Core profiles of Observation and Condition are either too specific or insuficient to be used as bases for this Implementation Guide's needs. US Core Variance request approved Aug. 26, 2021, Jira tracker issue ID = FHIR-33246.

This code is from a local SNOMED CT extension and will not be found in any released version (international, US, or other) until reviewed and accepted by SNOMED.

Errors sorted by type

Terminology_PassThrough_TX_Message

fsh-generated/resources/Observation-KnownSARSCoV2ExposureExample.jsonThe code "LA30835-5" is not valid in the system http://loinc.org; The code provided (http://loinc.org#LA30835-5) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://loinc.org#LA30835-5'