INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/davinci-pdex-plan-net --branch master repo DEBUG:root:Time to deadline 35879.998094 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.678618 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.358829 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 177 packages in 6s 28 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.1.0 npm notice Changelog: npm notice Run `npm install -g npm@11.1.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-pdex-plan-net/ -out /scratch/repo DEBUG:root:Time to deadline 35871.269699 seconds FHIR IG Publisher Version 1.8.14 (Git# d6271a564c07). Built 2025-02-22T19:22:33.467Z (69 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-pdex-plan-net/ -out /scratch/repo Start Clock @ Tuesday, February 25, 2025, 4:58:03 PM Coordinated Universal Time (2025-02-25T16:58:03Z) Build FHIR IG from /scratch/repo (00:00.023 / 00:00.024, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.026, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.029, 97Mb) Run Sushi on /scratch/repo (00:00.003 / 00:00.032, 97Mb) Sushi: info Running SUSHI v3.14.0 (implements FHIR Shorthand specification v3.0.0) (00:00.572 / 00:00.605, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.605, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.605, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.606, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.606, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.617 / 00:01.223, 113Mb) Sushi: info Importing FSH text... (00:00.116 / 00:01.340, 113Mb) Sushi: info Preprocessed 9 documents with 32 aliases. (00:00.366 / 00:01.706, 113Mb) Sushi: info Imported 60 definitions and 49 instances. (00:00.063 / 00:01.770, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.122 / 00:01.893, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.3.0 (00:00.645 / 00:02.538, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.3.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.3.0 (00:00.000 / 00:02.539, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.3.0 (00:00.919 / 00:03.459, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.3.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.3.0 (00:00.002 / 00:03.462, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.3.0 with 75 resources (00:00.044 / 00:03.506, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.2.0 (00:00.464 / 00:03.970, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.2.0 from https://packages.fhir.org/hl7.terminology.r4/6.2.0 (00:00.000 / 00:03.970, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.2.0 (00:02.757 / 00:06.728, 113Mb) Sushi: info Cached hl7.terminology.r4#6.2.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.2.0 (00:00.001 / 00:06.729, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.2.0 with 4323 resources (00:01.255 / 00:07.984, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.433 / 00:08.418, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:08.419, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.451 / 00:09.870, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.002 / 00:09.872, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.306 / 00:10.179, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core.v311#3.1.1 from https://packages.fhir.org/hl7.fhir.us.core.v311/3.1.1 (00:00.001 / 00:10.181, 113Mb) Sushi: info Downloaded hl7.fhir.us.core.v311#3.1.1 (00:00.424 / 00:10.606, 113Mb) Sushi: info Cached hl7.fhir.us.core.v311#3.1.1 to /home/fhiruser/.fhir/packages/hl7.fhir.us.core.v311#3.1.1 (00:00.001 / 00:10.607, 113Mb) Sushi: info Loaded hl7.fhir.us.core.v311#3.1.1 with 0 resources (00:00.001 / 00:10.608, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core.v610#6.1.0 from https://packages.fhir.org/hl7.fhir.us.core.v610/6.1.0 (00:00.000 / 00:10.609, 113Mb) Sushi: info Downloaded hl7.fhir.us.core.v610#6.1.0 (00:00.415 / 00:11.024, 113Mb) Sushi: info Cached hl7.fhir.us.core.v610#6.1.0 to /home/fhiruser/.fhir/packages/hl7.fhir.us.core.v610#6.1.0 (00:00.001 / 00:11.026, 113Mb) Sushi: info Loaded hl7.fhir.us.core.v610#6.1.0 with 0 resources (00:00.000 / 00:11.026, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core#7.0.0 from https://packages.fhir.org/hl7.fhir.us.core/7.0.0 (00:00.000 / 00:11.027, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core#7.0.0 from https://packages2.fhir.org/packages/hl7.fhir.us.core/7.0.0 (00:00.411 / 00:11.438, 113Mb) Sushi: info Downloaded hl7.fhir.us.core#7.0.0 (00:00.567 / 00:12.006, 113Mb) Sushi: info Cached hl7.fhir.us.core#7.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.us.core#7.0.0 (00:00.001 / 00:12.006, 113Mb) Sushi: info Loaded hl7.fhir.us.core#7.0.0 with 211 resources (00:00.094 / 00:12.101, 113Mb) Sushi: info Attempting to download hl7.fhir.us.davinci-hrex#1.1.0 from https://packages.fhir.org/hl7.fhir.us.davinci-hrex/1.1.0 (00:00.000 / 00:12.101, 113Mb) Sushi: info Attempting to download hl7.fhir.us.davinci-hrex#1.1.0 from https://packages2.fhir.org/packages/hl7.fhir.us.davinci-hrex/1.1.0 (00:00.456 / 00:12.558, 113Mb) Sushi: info Downloaded hl7.fhir.us.davinci-hrex#1.1.0 (00:00.338 / 00:12.896, 113Mb) Sushi: info Cached hl7.fhir.us.davinci-hrex#1.1.0 to /home/fhiruser/.fhir/packages/hl7.fhir.us.davinci-hrex#1.1.0 (00:00.001 / 00:12.897, 113Mb) Sushi: info Loaded hl7.fhir.us.davinci-hrex#1.1.0 with 31 resources (00:00.016 / 00:12.914, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:12.915, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.795 / 00:15.710, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:15.711, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.236 / 00:16.948, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 56 resources (00:00.025 / 00:16.973, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.018 / 00:16.992, 113Mb) Sushi: info Converted 22 FHIR StructureDefinitions. (00:01.645 / 00:18.638, 113Mb) Sushi: info Converted 14 FHIR CodeSystems. (00:00.174 / 00:18.812, 113Mb) Sushi: info Converted 24 FHIR ValueSets. (00:00.318 / 00:19.130, 113Mb) Sushi: info Converted 49 FHIR instances. (00:04.555 / 00:23.686, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:23.686, 113Mb) Sushi: info Exported 109 FHIR resources as JSON. (00:00.085 / 00:23.772, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.003 / 00:23.775, 113Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.davinci-pdex-plan-net.json (00:00.048 / 00:23.824, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:23.824, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:23.825, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:23.826, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:23.826, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:23.826, 113Mb) Sushi: | | 9 | 13 | 0 | 0 | | (00:00.000 / 00:23.826, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:23.826, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:23.827, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:23.827, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:23.827, 113Mb) Sushi: | | 24 | 14 | 49 | | (00:00.000 / 00:23.827, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:23.827, 113Mb) Sushi: | | (00:00.000 / 00:23.828, 113Mb) Sushi: =================================================================== (00:00.000 / 00:23.828, 113Mb) Sushi: | You've proven any-fin is possible. 0 Errors 0 Warnings | (00:00.000 / 00:23.828, 113Mb) Sushi: =================================================================== (00:00.000 / 00:23.828, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.626 / 00:24.455, 37Mb) Load Template from hl7.davinci.template#current (00:00.535 / 00:24.991, 93Mb) Installing hl7.davinci.template#current to the package cache Fetching: Installing hl7.davinci.template#current done. Load Template from hl7.fhir.template#current (00:01.097 / 00:26.089, 95Mb) Installing hl7.fhir.template#current to the package cache Fetching: Installing hl7.fhir.template#current done. Load Template from hl7.base.template#current (00:00.187 / 00:26.277, 95Mb) Installing hl7.base.template#current to the package cache Fetching: Installing hl7.base.template#current done. Load Template from fhir.base.template#current (00:00.254 / 00:26.531, 95Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. Root directory: /scratch/repo (00:03.217 / 00:29.749, 391Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.001 / 00:29.751, 391Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-13078326503704618503.log Connect to Terminology Server at http://tx.fhir.org (00:30.660 / 01:00.412, 269Mb) Installing hl7.fhir.pubpack#0.2.1 to the package cache Fetching: Installing hl7.fhir.pubpack#0.2.1 done. Load Package hl7.fhir.pubpack#0.2.1 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.2.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.us.core#3.1.1 to the package cache Fetching: Installing hl7.fhir.us.core#3.1.1 done. Load Package hl7.fhir.us.core#3.1.1 Load Package hl7.fhir.us.core.v311#3.1.1 Installing hl7.fhir.us.core#6.1.0 to the package cache Fetching: Installing hl7.fhir.us.core#6.1.0 done. Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: Installing hl7.terminology.r4#5.0.0 done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#1.0.0 done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache Fetching: Installing hl7.fhir.uv.bulkdata#2.0.0 done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache Fetching: Installing hl7.fhir.uv.smart-app-launch#2.1.0 done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache Fetching: Installing us.nlm.vsac#0.11.0 done. Load Package us.nlm.vsac#0.11.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache Fetching: Installing hl7.fhir.uv.sdc#3.0.0 done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:46.568 / 01:46.981, 910Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache Fetching: Installing us.cdc.phinvads#0.12.0 done. Load Package us.cdc.phinvads#0.12.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache Fetching: Installing ihe.formatcode.fhir#1.1.0 done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package hl7.fhir.us.core.v610#6.1.0 Installing hl7.terminology.r4#5.5.0 to the package cache Fetching: Installing hl7.terminology.r4#5.5.0 done. Load Package hl7.terminology.r4#5.5.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache Fetching: Installing hl7.fhir.uv.smart-app-launch#2.0.0 done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.18.0 to the package cache Fetching: Installing us.nlm.vsac#0.18.0 done. Load Package us.nlm.vsac#0.18.0 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#5.1.0 done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.fhir.us.core#7.0.0 Installing hl7.terminology.r4#6.1.0 to the package cache Fetching: Installing hl7.terminology.r4#6.1.0 done. Load Package hl7.terminology.r4#6.1.0 Installing us.nlm.vsac#0.19.0 to the package cache Fetching: Installing us.nlm.vsac#0.19.0 done. Load Package us.nlm.vsac#0.19.0 Load Package hl7.fhir.us.davinci-hrex#1.1.0 Load Package hl7.fhir.uv.tools.r4#0.3.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (00:55.579 / 02:42.560, 1Gb) Load Content (00:00.000 / 02:42.561, 1Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.158 / 02:42.719, 1Gb) Process Loaded Resources (00:03.797 / 02:46.516, 1Gb) Generating Snapshots (00:02.003 / 02:48.520, 922Mb) loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Fetch http://hl7.org/fhir/us/davinci-pdex-plan-net/package-list.json for version check (00:01.070 / 02:49.590, 1Gb) Processing Conformance Resources (00:00.124 / 02:49.715, 1Gb) Checking Language (00:00.000 / 02:49.716, 1Gb) Load Dependency Info (00:00.003 / 02:49.719, 1Gb) Load Info (00:00.001 / 02:49.721, 1Gb) Load Paths (00:00.001 / 02:49.722, 1Gb) Check R4 / R4B (00:00.000 / 02:49.723, 1Gb) Assign Comparison Ids (00:00.035 / 02:49.758, 1Gb) Propagating status (00:00.000 / 02:49.759, 1Gb) Generating Narratives (00:00.062 / 02:49.821, 1Gb) Validating Conformance Resources (00:04.165 / 02:53.987, 1Gb) Check profiles & code systems (00:40.214 / 03:34.202, 7Gb) Check realm rules (00:00.004 / 03:34.206, 7Gb) Installing hl7.fhir.us.core#8.0.0-ballot to the package cache Fetching: Installing hl7.fhir.us.core#8.0.0-ballot done. US Core Comparisons Finished Previous Version Comparison (00:02.913 / 03:37.119, 7Gb) Installing hl7.fhir.us.davinci-pdex-plan-net#1.1.0 to the package cache Fetching: Installing hl7.fhir.us.davinci-pdex-plan-net#1.1.0 done. Validating Resources (00:05.263 / 03:42.383, 1Gb) Processing Provenance Records (00:06.387 / 03:48.771, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 03:48.772, 2Gb) Generate Native Outputs (00:00.237 / 03:49.009, 2Gb) Run Template (00:11.904 / 04:00.914, 3Gb) Generate HTML Outputs (00:03.880 / 04:04.794, 1Gb) Generate Spreadsheets (02:15.926 / 06:20.721, 12Gb) Generate Summaries (00:04.461 / 06:25.183, 10Gb) Generating Summary Outputs (00:00.000 / 06:25.183, 10Gb) DB Cumulative Time invested: 00:00:23.505 Sending Usage Stats to Server (00:16.580 / 06:41.764, 11Gb) ## Memory (MB): Use = 12122, Free = 6885, Total = 19008, Max = 19008 (00:00.009 / 06:41.773, 11Gb) Reclaiming memory... (00:00.000 / 06:41.774, 11Gb) ## Memory (MB): Use = 9766, Free = 9241, Total = 19008, Max = 19008 (00:04.714 / 06:46.488, 9Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 06:46.489, 9Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 06:46.490, 9Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 06:46.490, 9Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 06:46.490, 9Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.434 / 06:46.925, 9Gb) Jekyll: Generating... (00:00.000 / 06:46.925, 9Gb) Jekyll: done in 4.286 seconds. (00:04.284 / 06:51.210, 9Gb) Checking Output HTML (00:04.182 / 06:55.392, 11Gb) found 2205 files (00:00.010 / 06:55.403, 11Gb) ........................................ ........................................ ... 2205 html files, 0 pages invalid xhtml (0%) (00:15.735 / 07:11.139, 13Gb) ... 262567 links, 0 broken links (0%) (00:00.000 / 07:11.139, 13Gb) Generate fragment-usage-analysis.csv (00:00.000 / 07:11.139, 13Gb) Build final .zip (00:00.005 / 07:11.144, 13Gb) Final .zip built (00:03.304 / 07:14.449, 13Gb) Installing hl7.fhir.r4.examples#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.examples#4.0.1 done. Installing hl7.fhir.uv.extensions#5.1.0-cibuild to the package cache Fetching: Installing hl7.fhir.uv.extensions#5.1.0-cibuild done. Installing hl7.terminology.r5#5.3.0 to the package cache Fetching: Installing hl7.terminology.r5#5.3.0 done. Built. Times: loading: 00:07.153, generate: 05:08.375, propagating status: 00:00.062, narrative generation: 00:04.165, realm-rules: 00:02.913, previous-version: 00:05.237, jekyll: 00:04.753, validation: 00:46.465 (#166), template: 00:04.570 (#3) (00:43.723 / 07:58.173, 16Gb) Generating QA (00:00.000 / 07:58.173, 16Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links: 0 (00:01.419 / 07:59.593, 16Gb) Finished. Max Memory Used = 16Gb (00:00.027 / 07:59.620, 16Gb)