Clinical Genomics Resource Incubator
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Clinical Genomics Resource Incubator, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/cg-incubator/ and changes regularly. See the Directory of published versions

ValueSet: Molecular Definition Literal Encoding VS (Experimental)

Official URL: http://hl7.org/fhir/uv/cg-incubator/ValueSet/moleculardefinition-literal-encoding Version: 0.1.0-ci-build
Standards status: Informative Draft as of 2025-01-30 Maturity Level: 1 Computable Name: MolecularDefinitionLiteralEncoding
Other Identifiers: OID:2.16.840.1.113883.4.642.3.2051

The encoding used in molecular definition literal representations.

References

Logical Definition (CLD)

Last updated: 2025-01-30 00:00:00+0000

Profile: Shareable ValueSet

 

Expansion

Expansion performed internally based on codesystem Molecular Definition Literal Encoding v0.1.0-ci-build (CodeSystem)

This value set contains 9 concepts

SystemCodeDisplay (en)DefinitionJSONXML
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  nuc-dna-1-noambNucleotide, 1-letter, no ambiguity, DNA residuesSingle-letter DNA nucleotide codes (A, C, G, T) without ambiguity codes. Based on IUPAC symbols.
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  nuc-rna-1-noambNucleotide, 1-letter, no ambiguity, RNA residuesSingle-letter RNA nucleotide codes (A, C, G, U) without ambiguity codes. Based on IUPAC symbols.
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  nuc-dna-1-noamb-nNucleotide, 1-letter, no ambiguity except N, DNA residuesSingle-letter DNA nucleotide codes (A, C, G, T, N) where N represents any nucleotide. Based on IUPAC symbols.
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  nuc-dna-1-ambNucleotide, 1-letter, with ambiguity, DNA residuesSingle-letter DNA nucleotide codes with ambiguity codes (A, C, G, T, R, Y, M, K, S, W, H, B, V, D, N). Based on IUPAC symbols.
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  nuc-rna-1-ambNucleotide, 1-letter, with ambiguity, RNA residuesSingle-letter RNA nucleotide codes with ambiguity codes. Based on IUPAC symbols.
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  aa-1-noamb-20commonAmino acid, 1-letter, no ambiguity, 20 commonStandard single-letter amino acid codes for the 20 common amino acids without ambiguity codes (A, C, D, E, F, G, H, I, K, L, M, N, P, Q, R, S, T, V, W, Y). Based on IUPAC symbols.
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  aa-3-noamb-20commonAmino acid, 3-letter, no ambiguity, 20 commonThree-letter amino acid codes for the 20 common amino acids without ambiguity codes (Ala, Arg, Asn, Asp, Cys, Gln, Glu, Gly, His, Ile, Leu, Lys, Met, Phe, Pro, Ser, Thr, Trp, Tyr, Val). Based on IUPAC symbols.
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  aa-1-ambAmino acid, 1-letter, with ambiguitySingle-letter amino acid codes with ambiguity codes (A, B, C, D, E, F, G, H, I, K, L, M, N, P, Q, R, S, T, U, V, W, X, Y, Z). Based on IUPAC symbols.
http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-literal-encoding  aa-3-ambAmino acid, 3-letter, with ambiguityThree-letter amino acid codes with ambiguity codes (Ala, Arg, Asn, Asp, Cys, Gln, Glu, Gly, His, Ile, Leu, Lys, Met, Phe, Pro, Ser, Thr, Trp, Tyr, Val, Asx, Sec, Xaa, Glx). Based on IUPAC symbols.

Description of the above table(s).