Clinical Genomics Resource Incubator
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Clinical Genomics Resource Incubator, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/cg-incubator/ and changes regularly. See the Directory of published versions

: PGx Specimen

Page standards status: Informative

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Specimen ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "pgxSpecimen"] ; # 
  fhir:language [ fhir:v "en"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\" xml:lang=\"en\" lang=\"en\"><p class=\"res-header-id\"><b>Generated Narrative: Specimen pgxSpecimen</b></p><a name=\"pgxSpecimen\"> </a><a name=\"hcpgxSpecimen\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Language: en</p></div><p><b>identifier</b>: <code>http://example.org/identifiers/specimens</code>/pgx-spec-001</p><p><b>status</b>: Available</p><p><b>type</b>: <span title=\"Codes:{http://snomed.info/sct 119297000}\">Blood specimen (specimen)</span></p><p><b>subject</b>: <a href=\"Patient-pgxPatient.html\">Adam B. Everyman (official) Male, DoB: 1951-01-20 ( Medical record number: m123 (use: usual, period: 2021-01-01 --&gt; (ongoing)))</a></p><p><b>receivedTime</b>: 2020-12-20 10:00:00+0000</p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collected[x]</b></td><td><b>Method</b></td></tr><tr><td style=\"display: none\">*</td><td>2020-12-20 09:00:00+0000</td><td><span title=\"Codes:{http://snomed.info/sct 28520004}\">Venipuncture for blood test (procedure)</span></td></tr></table></div>"^^rdf:XMLLiteral ]
  ] ; # 
  fhir:identifier ( [
fhir:system [
fhir:v "http://example.org/identifiers/specimens"^^xsd:anyURI ;
fhir:l <http://example.org/identifiers/specimens>     ] ;
fhir:value [ fhir:v "pgx-spec-001" ]
  ] ) ; # 
  fhir:status [ fhir:v "available"] ; # 
  fhir:type [
    ( fhir:coding [
a sct:119297000 ;
fhir:system [
fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
fhir:l <http://snomed.info/sct>       ] ;
fhir:code [ fhir:v "119297000" ] ;
fhir:display [ fhir:v "Blood specimen (specimen)" ]     ] )
  ] ; # 
  fhir:subject [
fhir:l fhir:Patient/pgxPatient ;
fhir:reference [ fhir:v "Patient/pgxPatient" ]
  ] ; # 
  fhir:receivedTime [ fhir:v "2020-12-20T10:00:00Z"^^xsd:dateTime] ; # 
  fhir:collection [
fhir:collected [
a fhir:DateTime ;
fhir:v "2020-12-20T09:00:00Z"^^xsd:dateTime     ] ;
fhir:method [
      ( fhir:coding [
a sct:28520004 ;
fhir:system [
fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
fhir:l <http://snomed.info/sct>         ] ;
fhir:code [ fhir:v "28520004" ] ;
fhir:display [ fhir:v "Venipuncture for blood test (procedure)" ]       ] )     ]
  ] . #