@prefix fhir: . @prefix loinc: . @prefix owl: . @prefix rdf: . @prefix rdfs: . @prefix xsd: . # - resource ------------------------------------------------------------------- a fhir:MolecularDefinition ; fhir:resourceDefinition http://hl7.org/fhir/StructureDefinition/MolecularDefinition|0.1.0-ci-build ; fhir:nodeRole fhir:treeRoot ; fhir:id [ fhir:v "example-sequence1"] ; # fhir:language [ fhir:v "en"] ; # fhir:text [ fhir:status [ fhir:v "generated" ] ; fhir:div [ fhir:v "

Generated Narrative: MolecularDefinition example-sequence1

Language: en

moleculeType: DNA sequence

representation

Literals

-Value
*ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA

resolvable: DocumentReference: identifier = http://example.org/identifiers/files#11111; status = current; docStatus = preliminary; description = A sample Document Reference instance representing Homo sapiens isolate 7 BRCA1 (BRCA1) gene, exon 10 and partial cds.

extracted

startingMolecule: Starting Sequence Resource: ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGAGCCTGTACAGACAGTT AATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA

coordinateInterval

CoordinateSystems

-System
*0-based interval counting

start: 0

end: 754

reverseComplement: false

concatenated

sequenceElement

sequence: Sequence-of index 0-Resource for concatenated sequence example: ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG

ordinalIndex: 0

sequenceElement

sequence: Sequence-of index 1-Resource for concatenated sequence example: AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG

ordinalIndex: 1

sequenceElement

sequence: Sequence-of index 2-Resource for concatenated sequence example: TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA

ordinalIndex: 2

relative

startingMolecule: Starting Sequence Resource

edit

coordinateInterval

CoordinateSystems

-System
*0-based interval counting

start: 0

end: 5

replacementMolecule: Replacement Sequence Resource: ATGAA

replacedMolecule: Replaced Sequence Resource: CCCCC

"^^rdf:XMLLiteral ] ] ; # fhir:moleculeType [ fhir:coding ( [ fhir:system [ fhir:v "http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-moleculetype"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "dna" ] ; fhir:display [ fhir:v "DNA sequence" ] ] ) ] ; # fhir:representation ( [ fhir:literal [ fhir:value [ fhir:v "ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" ] ] ; fhir:resolvable [ fhir:l ; fhir:reference [ fhir:v "DocumentReference/example-genomicFile-mw7162561" ] ] ; fhir:extracted [ fhir:startingMolecule [ fhir:l ; fhir:reference [ fhir:v "MolecularDefinition/example-starting-sequence-2b-extracted" ] ; fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ; fhir:l fhir:MolecularDefinition ] ; fhir:display [ fhir:v "Starting Sequence Resource: ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGAGCCTGTACAGACAGTT AATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" ] ] ; fhir:coordinateInterval [ fhir:coordinateSystem [ fhir:system [ fhir:coding ( [ a loinc:LA30100-4 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "LA30100-4" ] ; fhir:display [ fhir:v "0-based interval counting" ] ] ) ; fhir:text [ fhir:v "0-based interval counting" ] ] ] ; fhir:start [ a fhir:Quantity ; fhir:value [ fhir:v "0"^^xsd:decimal ] ] ; fhir:end [ a fhir:Quantity ; fhir:value [ fhir:v "754"^^xsd:decimal ] ] ] ; fhir:reverseComplement [ fhir:v false ] ] ; fhir:concatenated [ fhir:sequenceElement ( [ fhir:sequence [ fhir:l ; fhir:reference [ fhir:v "MolecularDefinition/example-sequence0-2b-concatenated" ] ; fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ; fhir:l fhir:MolecularDefinition ] ; fhir:display [ fhir:v "Sequence-of index 0-Resource for concatenated sequence example: ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG" ] ] ; fhir:ordinalIndex [ fhir:v 0 ] ] [ fhir:sequence [ fhir:l ; fhir:reference [ fhir:v "MolecularDefinition/example-sequence1-2b-concatenated" ] ; fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ; fhir:l fhir:MolecularDefinition ] ; fhir:display [ fhir:v "Sequence-of index 1-Resource for concatenated sequence example: AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG" ] ] ; fhir:ordinalIndex [ fhir:v 1 ] ] [ fhir:sequence [ fhir:l ; fhir:reference [ fhir:v "MolecularDefinition/example-sequence2-2b-concatenated" ] ; fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ; fhir:l fhir:MolecularDefinition ] ; fhir:display [ fhir:v "Sequence-of index 2-Resource for concatenated sequence example: TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" ] ] ; fhir:ordinalIndex [ fhir:v 2 ] ] ) ] ; fhir:relative [ fhir:startingMolecule [ fhir:l ; fhir:reference [ fhir:v "MolecularDefinition/example-starting-sequence-2b-relative" ] ; fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ; fhir:l fhir:MolecularDefinition ] ; fhir:display [ fhir:v "Starting Sequence Resource" ] ] ; fhir:edit ( [ fhir:coordinateInterval [ fhir:coordinateSystem [ fhir:system [ fhir:coding ( [ a loinc:LA30100-4 ; fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ; fhir:l ] ; fhir:code [ fhir:v "LA30100-4" ] ; fhir:display [ fhir:v "0-based interval counting" ] ] ) ; fhir:text [ fhir:v "0-based interval counting" ] ] ] ; fhir:start [ a fhir:Quantity ; fhir:value [ fhir:v "0"^^xsd:decimal ] ] ; fhir:end [ a fhir:Quantity ; fhir:value [ fhir:v "5"^^xsd:decimal ] ] ] ; fhir:replacementMolecule [ fhir:l ; fhir:reference [ fhir:v "MolecularDefinition/example-replacement-sequence" ] ; fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ; fhir:l fhir:MolecularDefinition ] ; fhir:display [ fhir:v "Replacement Sequence Resource: ATGAA" ] ] ; fhir:replacedMolecule [ fhir:l ; fhir:reference [ fhir:v "MolecularDefinition/example-replaced-sequence" ] ; fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ; fhir:l fhir:MolecularDefinition ] ; fhir:display [ fhir:v "Replaced Sequence Resource: CCCCC" ] ] ] ) ] ] ) . # a fhir:Uv . a fhir:Uv . a fhir:Uv . a fhir:Uv . a fhir:Uv . a fhir:Uv . a fhir:Uv . a fhir:Uv . # -------------------------------------------------------------------------------------